Wall clock time and date at job start Sat Apr 11 2020 06:28:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.29422 * 125.69555 * 2 1
4 4 N 1.26396 * 116.47568 * 180.02562 * 3 2 1
5 5 C 1.29414 * 116.47571 * 359.97438 * 4 3 2
6 6 C 1.50701 * 125.69626 * 179.97438 * 5 4 3
7 7 N 1.46906 * 109.46965 * 90.03106 * 6 5 4
8 8 C 1.46900 * 110.99676 * 294.30516 * 7 6 5
9 9 C 1.53238 * 109.33747 * 172.74743 * 8 7 6
10 10 N 1.47075 * 108.52323 * 53.82834 * 9 8 7
11 11 C 1.34780 * 120.88846 * 128.79687 * 10 9 8
12 12 O 1.21272 * 120.00656 * 180.02562 * 11 10 9
13 13 C 1.50702 * 119.99165 * 0.02562 * 11 10 9
14 14 S 1.81006 * 109.46932 * 180.02562 * 13 11 10
15 15 C 1.76194 * 100.00219 * 180.02562 * 14 13 11
16 16 H 1.08004 * 120.00130 * 359.97438 * 15 14 13
17 17 C 1.38793 * 120.00197 * 179.97438 * 15 14 13
18 18 N 1.31628 * 119.99990 * 0.02562 * 17 15 14
19 19 Si 1.86805 * 120.00117 * 179.97438 * 17 15 14
20 20 H 1.48495 * 109.47127 * 0.02562 * 19 17 15
21 21 H 1.48508 * 109.47034 * 120.00273 * 19 17 15
22 22 H 1.48501 * 109.47116 * 240.00108 * 19 17 15
23 23 C 1.47082 * 118.23640 * 308.81163 * 10 9 8
24 24 C 1.46888 * 111.00033 * 170.00037 * 7 6 5
25 25 S 1.71222 * 125.69808 * 180.30768 * 2 1 3
26 26 H 1.09007 * 109.47532 * 89.97713 * 1 2 3
27 27 H 1.08994 * 109.47138 * 209.97512 * 1 2 3
28 28 H 1.09003 * 109.47506 * 329.97764 * 1 2 3
29 29 H 1.08993 * 109.47133 * 330.03144 * 6 5 4
30 30 H 1.08996 * 109.47320 * 210.02884 * 6 5 4
31 31 H 1.09000 * 109.48943 * 292.70004 * 8 7 6
32 32 H 1.08993 * 109.49832 * 52.78604 * 8 7 6
33 33 H 1.09000 * 109.62989 * 294.11824 * 9 8 7
34 34 H 1.09006 * 109.79059 * 173.62683 * 9 8 7
35 35 H 1.09003 * 109.47419 * 299.99959 * 13 11 10
36 36 H 1.08995 * 109.47299 * 60.00996 * 13 11 10
37 37 H 0.96998 * 120.00085 * 180.02562 * 18 17 15
38 38 H 1.08999 * 109.63044 * 291.47581 * 23 10 9
39 39 H 1.08998 * 109.78912 * 170.98795 * 23 10 9
40 40 H 1.09008 * 109.49677 * 307.21240 * 24 7 6
41 41 H 1.09002 * 109.49726 * 67.26277 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2621 1.0511 0.0000
4 7 3.5097 0.8486 -0.0005
5 6 3.8936 -0.3873 -0.0004
6 6 5.3232 -0.8640 -0.0015
7 7 5.7887 -1.0192 1.3832
8 6 5.8461 0.2793 2.0678
9 6 6.1587 0.0572 3.5514
10 7 7.3804 -0.7550 3.6551
11 6 8.4080 -0.3629 4.4340
12 8 9.4082 -1.0448 4.5073
13 6 8.3140 0.9232 5.2140
14 16 9.8405 1.1712 6.1546
15 6 9.4662 2.6993 6.9479
16 1 8.5157 3.1808 6.7715
17 6 10.3928 3.2843 7.7997
18 7 11.5515 2.6978 8.0144
19 14 9.9963 4.9048 8.6402
20 1 8.6400 5.3536 8.2350
21 1 10.0370 4.7213 10.1133
22 1 10.9965 5.9272 8.2409
23 6 7.4512 -2.0066 2.8858
24 6 7.0877 -1.7033 1.4283
25 16 2.5060 -1.3905 -0.0075
26 1 -0.3634 0.0004 -1.0277
27 1 -0.3633 -0.8902 0.5134
28 1 -0.3634 0.8898 0.5142
29 1 5.9490 -0.1346 -0.5156
30 1 5.3861 -1.8231 -0.5155
31 1 6.6276 0.8926 1.6193
32 1 4.8854 0.7848 1.9702
33 1 5.3292 -0.4670 4.0260
34 1 6.3146 1.0173 4.0435
35 1 8.1726 1.7563 4.5254
36 1 7.4686 0.8712 5.8999
37 1 12.1990 3.1064 8.6100
38 1 6.7459 -2.7292 3.2963
39 1 8.4615 -2.4129 2.9343
40 1 7.0276 -2.6358 0.8669
41 1 7.8519 -1.0626 0.9882
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001112628929.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:46
Heat of formation + Delta-G solvation = 45.166990 kcal
Electronic energy + Delta-G solvation = -24429.508830 eV
Core-core repulsion = 20791.492890 eV
Total energy + Delta-G solvation = -3638.015940 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.69656 -40.01926 -38.06590 -35.08020 -33.43502 -32.42398 -31.73279 -30.57356
-29.27512 -27.66882 -25.84494 -25.44759 -24.22092 -23.72049 -21.40040 -20.15423
-19.65976 -19.02954 -17.74406 -16.96021 -16.36373 -16.09242 -15.64619 -15.43682
-15.41635 -15.11284 -14.79774 -14.61679 -13.97487 -13.89150 -13.84897 -13.51715
-13.43503 -13.18254 -12.88489 -12.65279 -12.58691 -12.25845 -11.86493 -11.55932
-11.49331 -11.36374 -11.06324 -11.00675 -10.81808 -10.74162 -10.55644 -10.10759
-10.02041 -9.79032 -9.37784 -9.06999 -8.98319 -8.46896 -8.22215 -6.49854
-6.21252 -3.91782 0.00712 0.50197 0.98468 2.14126 2.88770 3.02935
3.22372 3.25775 3.31491 3.37350 3.58324 3.66591 4.08203 4.20738
4.34092 4.56390 4.58193 4.74469 4.86182 4.89586 4.94598 5.03289
5.09367 5.11742 5.13972 5.17451 5.24962 5.29191 5.36426 5.52324
5.56643 5.68948 5.76776 5.85859 5.91312 6.11818 6.41489 6.52984
6.62049 7.53962 7.60784 8.18085 8.36099 8.53759 9.24325 10.86233
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.016680 B = 0.002282 C = 0.002061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1678.292305 B =12267.656140 C =13579.202091
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C -0.025 4.025
3 N -0.261 5.261
4 N -0.255 5.255
5 C -0.009 4.009
6 C 0.133 3.867
7 N -0.534 5.534
8 C 0.038 3.962
9 C 0.116 3.884
10 N -0.623 5.623
11 C 0.536 3.464
12 O -0.517 6.517
13 C -0.151 4.151
14 S -0.061 6.061
15 C -0.534 4.534
16 H 0.073 0.927
17 C 0.073 3.927
18 N -0.868 5.868
19 Si 0.919 3.081
20 H -0.271 1.271
21 H -0.280 1.280
22 H -0.280 1.280
23 C 0.120 3.880
24 C 0.044 3.956
25 S 0.190 5.810
26 H 0.090 0.910
27 H 0.085 0.915
28 H 0.094 0.906
29 H 0.073 0.927
30 H 0.102 0.898
31 H 0.048 0.952
32 H 0.089 0.911
33 H 0.073 0.927
34 H 0.095 0.905
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.268 0.732
38 H 0.072 0.928
39 H 0.099 0.901
40 H 0.089 0.911
41 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.322 -11.315 -19.706 31.854
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.303 4.303
3 N -0.100 5.100
4 N -0.093 5.093
5 C -0.288 4.288
6 C 0.002 3.998
7 N -0.260 5.260
8 C -0.090 4.090
9 C -0.008 4.008
10 N -0.360 5.360
11 C 0.325 3.675
12 O -0.391 6.391
13 C -0.302 4.302
14 S 0.166 5.834
15 C -0.682 4.682
16 H 0.091 0.909
17 C -0.136 4.136
18 N -0.503 5.503
19 Si 0.745 3.255
20 H -0.196 1.196
21 H -0.206 1.206
22 H -0.206 1.206
23 C -0.004 4.004
24 C -0.085 4.085
25 S 0.434 5.566
26 H 0.109 0.891
27 H 0.104 0.896
28 H 0.113 0.887
29 H 0.091 0.909
30 H 0.120 0.880
31 H 0.066 0.934
32 H 0.107 0.893
33 H 0.091 0.909
34 H 0.113 0.887
35 H 0.107 0.893
36 H 0.108 0.892
37 H 0.078 0.922
38 H 0.090 0.910
39 H 0.117 0.883
40 H 0.108 0.892
41 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -20.921 -12.254 -19.257 30.962
hybrid contribution -0.937 2.522 0.003 2.690
sum -21.858 -9.732 -19.253 30.711
Atomic orbital electron populations
1.20389 0.83941 1.04854 1.04317 1.29285 1.04444 0.92161 1.04415
1.71474 0.96858 1.26805 1.14842 1.71478 1.06590 1.17104 1.14171
1.28991 1.02846 0.92552 1.04449 1.20509 0.86262 1.01694 0.91338
1.61956 1.28680 1.22140 1.13197 1.22590 1.02368 0.89557 0.94528
1.21773 0.87092 0.96647 0.95299 1.48171 1.16876 1.23544 1.47369
1.20336 0.81850 0.86871 0.78486 1.90686 1.29908 1.55298 1.63213
1.23555 1.07787 0.96592 1.02219 1.85386 1.13984 1.29654 1.54416
1.22897 1.05391 1.07877 1.32040 0.90890 1.24994 0.94463 0.98235
0.95924 1.70027 1.06417 1.38606 1.35245 0.86116 0.78511 0.81870
0.79005 1.19591 1.20558 1.20562 1.21576 1.03326 0.86502 0.88971
1.22545 0.88638 0.99170 0.98118 1.83690 0.97248 1.11341 1.64357
0.89136 0.89619 0.88737 0.90919 0.87969 0.93379 0.89266 0.90890
0.88712 0.89314 0.89234 0.92245 0.91014 0.88272 0.89237 0.93554
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.30 10.48 36.00 0.38 0.08 16
2 C -0.02 -0.19 7.53 -13.30 -0.10 -0.29 16
3 N -0.26 -2.98 11.66 32.58 0.38 -2.60 16
4 N -0.26 -2.99 10.71 32.58 0.35 -2.64 16
5 C -0.01 -0.08 6.17 -13.30 -0.08 -0.16 16
6 C 0.13 1.01 5.57 -4.97 -0.03 0.98 16
7 N -0.53 -4.86 4.62 -235.77 -1.09 -5.95 16
8 C 0.04 0.41 5.47 -3.70 -0.02 0.39 16
9 C 0.12 1.39 6.50 -3.61 -0.02 1.36 16
10 N -0.62 -8.99 3.01 -172.46 -0.52 -9.51 16
11 C 0.54 10.31 7.73 -10.98 -0.08 10.22 16
12 O -0.52 -11.80 15.32 5.56 0.09 -11.71 16
13 C -0.15 -3.12 4.52 36.01 0.16 -2.96 16
14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16
15 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16
16 H 0.07 1.99 7.80 -52.48 -0.41 1.59 16
17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16
18 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16
19 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16
20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
23 C 0.12 1.39 6.59 -3.60 -0.02 1.37 16
24 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16
25 S 0.19 1.24 23.04 -107.50 -2.48 -1.23 16
26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16
27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16
28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16
30 H 0.10 0.51 7.97 -51.93 -0.41 0.10 16
31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
32 H 0.09 1.02 6.36 -51.93 -0.33 0.69 16
33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.09 1.16 6.02 -51.93 -0.31 0.85 16
35 H 0.09 1.72 7.66 -51.91 -0.40 1.32 16
36 H 0.09 1.73 8.00 -51.92 -0.42 1.31 16
37 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.10 1.29 7.07 -51.93 -0.37 0.92 16
40 H 0.09 0.56 7.99 -51.92 -0.41 0.15 16
41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
LS Contribution 366.50 15.07 5.52 5.52
Total: -1.00 -36.46 366.50 -9.47 -45.93
By element:
Atomic # 1 Polarization: 2.34 SS G_CDS: -5.58 Total: -3.24 kcal
Atomic # 6 Polarization: -2.04 SS G_CDS: 0.36 Total: -1.68 kcal
Atomic # 7 Polarization: -46.15 SS G_CDS: -0.15 Total: -46.29 kcal
Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Atomic # 16 Polarization: -0.43 SS G_CDS: -4.69 Total: -5.12 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -36.46 -9.47 -45.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112628929.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.095 kcal
(2) G-P(sol) polarization free energy of solvation -36.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds