Wall clock time and date at job start Sat Apr 11 2020 06:28:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.29422 * 125.69555 * 2 1
4 4 N 1.26396 * 116.47568 * 180.02562 * 3 2 1
5 5 C 1.29414 * 116.47571 * 359.97438 * 4 3 2
6 6 C 1.50701 * 125.69626 * 179.97438 * 5 4 3
7 7 N 1.46906 * 109.46965 * 90.03106 * 6 5 4
8 8 C 1.46900 * 110.99676 * 294.30516 * 7 6 5
9 9 C 1.53238 * 109.33747 * 172.74743 * 8 7 6
10 10 N 1.47075 * 108.52323 * 53.82834 * 9 8 7
11 11 C 1.34780 * 120.88846 * 128.79687 * 10 9 8
12 12 O 1.21272 * 120.00656 * 180.02562 * 11 10 9
13 13 C 1.50702 * 119.99165 * 0.02562 * 11 10 9
14 14 S 1.81006 * 109.46932 * 180.02562 * 13 11 10
15 15 C 1.76194 * 100.00219 * 180.02562 * 14 13 11
16 16 H 1.08004 * 120.00130 * 359.97438 * 15 14 13
17 17 C 1.38793 * 120.00197 * 179.97438 * 15 14 13
18 18 N 1.31628 * 119.99990 * 0.02562 * 17 15 14
19 19 Si 1.86805 * 120.00117 * 179.97438 * 17 15 14
20 20 H 1.48495 * 109.47127 * 0.02562 * 19 17 15
21 21 H 1.48508 * 109.47034 * 120.00273 * 19 17 15
22 22 H 1.48501 * 109.47116 * 240.00108 * 19 17 15
23 23 C 1.47082 * 118.23640 * 308.81163 * 10 9 8
24 24 C 1.46888 * 111.00033 * 170.00037 * 7 6 5
25 25 S 1.71222 * 125.69808 * 180.30768 * 2 1 3
26 26 H 1.09007 * 109.47532 * 89.97713 * 1 2 3
27 27 H 1.08994 * 109.47138 * 209.97512 * 1 2 3
28 28 H 1.09003 * 109.47506 * 329.97764 * 1 2 3
29 29 H 1.08993 * 109.47133 * 330.03144 * 6 5 4
30 30 H 1.08996 * 109.47320 * 210.02884 * 6 5 4
31 31 H 1.09000 * 109.48943 * 292.70004 * 8 7 6
32 32 H 1.08993 * 109.49832 * 52.78604 * 8 7 6
33 33 H 1.09000 * 109.62989 * 294.11824 * 9 8 7
34 34 H 1.09006 * 109.79059 * 173.62683 * 9 8 7
35 35 H 1.09003 * 109.47419 * 299.99959 * 13 11 10
36 36 H 1.08995 * 109.47299 * 60.00996 * 13 11 10
37 37 H 0.96998 * 120.00085 * 180.02562 * 18 17 15
38 38 H 1.08999 * 109.63044 * 291.47581 * 23 10 9
39 39 H 1.08998 * 109.78912 * 170.98795 * 23 10 9
40 40 H 1.09008 * 109.49677 * 307.21240 * 24 7 6
41 41 H 1.09002 * 109.49726 * 67.26277 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2621 1.0511 0.0000
4 7 3.5097 0.8486 -0.0005
5 6 3.8936 -0.3873 -0.0004
6 6 5.3232 -0.8640 -0.0015
7 7 5.7887 -1.0192 1.3832
8 6 5.8461 0.2793 2.0678
9 6 6.1587 0.0572 3.5514
10 7 7.3804 -0.7550 3.6551
11 6 8.4080 -0.3629 4.4340
12 8 9.4082 -1.0448 4.5073
13 6 8.3140 0.9232 5.2140
14 16 9.8405 1.1712 6.1546
15 6 9.4662 2.6993 6.9479
16 1 8.5157 3.1808 6.7715
17 6 10.3928 3.2843 7.7997
18 7 11.5515 2.6978 8.0144
19 14 9.9963 4.9048 8.6402
20 1 8.6400 5.3536 8.2350
21 1 10.0370 4.7213 10.1133
22 1 10.9965 5.9272 8.2409
23 6 7.4512 -2.0066 2.8858
24 6 7.0877 -1.7033 1.4283
25 16 2.5060 -1.3905 -0.0075
26 1 -0.3634 0.0004 -1.0277
27 1 -0.3633 -0.8902 0.5134
28 1 -0.3634 0.8898 0.5142
29 1 5.9490 -0.1346 -0.5156
30 1 5.3861 -1.8231 -0.5155
31 1 6.6276 0.8926 1.6193
32 1 4.8854 0.7848 1.9702
33 1 5.3292 -0.4670 4.0260
34 1 6.3146 1.0173 4.0435
35 1 8.1726 1.7563 4.5254
36 1 7.4686 0.8712 5.8999
37 1 12.1990 3.1064 8.6100
38 1 6.7459 -2.7292 3.2963
39 1 8.4615 -2.4129 2.9343
40 1 7.0276 -2.6358 0.8669
41 1 7.8519 -1.0626 0.9882
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112628929.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:46
Heat of formation + Delta-G solvation = 18.123943 kcal
Electronic energy + Delta-G solvation = -24430.681505 eV
Core-core repulsion = 20791.492890 eV
Total energy + Delta-G solvation = -3639.188614 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.35331 -41.22182 -39.19414 -36.14685 -34.60800 -34.08901 -32.69250 -31.38322
-30.57900 -28.52493 -27.68029 -26.53621 -24.98743 -24.58395 -22.46668 -20.76123
-20.44667 -20.21148 -19.53890 -18.31432 -17.19668 -17.08428 -16.90115 -16.74404
-16.63506 -16.18896 -16.02849 -15.70954 -15.36705 -14.79885 -14.75616 -14.50489
-14.34149 -14.19902 -13.87120 -13.58384 -13.44140 -13.20591 -13.18084 -13.05715
-12.93120 -12.64340 -12.50981 -12.34251 -12.26022 -11.71842 -11.43827 -11.17811
-11.15026 -10.93273 -10.72387 -10.56701 -10.29981 -9.95039 -9.47736 -8.69711
-8.36908 -6.15249 -0.55898 -0.02771 0.39948 1.22576 1.39749 1.42996
1.47376 1.52588 1.55612 2.02703 2.24925 2.67420 2.97199 3.03876
3.21013 3.57025 3.58797 3.78708 3.79798 3.95895 4.10556 4.13190
4.21529 4.26183 4.28155 4.40733 4.44561 4.50541 4.56633 4.63135
4.69634 4.74789 4.76830 4.78728 4.99576 5.08824 5.39880 5.43266
5.69937 5.78179 6.17733 6.22065 7.04440 7.07843 7.55711 8.72603
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.016680 B = 0.002282 C = 0.002061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1678.292305 B =12267.656140 C =13579.202091
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C -0.030 4.030
3 N -0.307 5.307
4 N -0.293 5.293
5 C -0.027 4.027
6 C 0.134 3.866
7 N -0.530 5.530
8 C 0.048 3.952
9 C 0.113 3.887
10 N -0.610 5.610
11 C 0.536 3.464
12 O -0.562 6.562
13 C -0.126 4.126
14 S -0.147 6.147
15 C -0.546 4.546
16 H 0.081 0.919
17 C 0.014 3.986
18 N -0.910 5.910
19 Si 0.999 3.001
20 H -0.258 1.258
21 H -0.272 1.272
22 H -0.273 1.273
23 C 0.114 3.886
24 C 0.052 3.948
25 S 0.255 5.745
26 H 0.107 0.893
27 H 0.109 0.891
28 H 0.091 0.909
29 H 0.067 0.933
30 H 0.135 0.865
31 H 0.034 0.966
32 H 0.086 0.914
33 H 0.090 0.910
34 H 0.090 0.910
35 H 0.102 0.898
36 H 0.106 0.894
37 H 0.272 0.728
38 H 0.091 0.909
39 H 0.083 0.917
40 H 0.127 0.873
41 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.191 -12.023 -20.755 34.784
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.309 4.309
3 N -0.145 5.145
4 N -0.131 5.131
5 C -0.307 4.307
6 C 0.003 3.997
7 N -0.256 5.256
8 C -0.081 4.081
9 C -0.010 4.010
10 N -0.344 5.344
11 C 0.323 3.677
12 O -0.440 6.440
13 C -0.277 4.277
14 S 0.080 5.920
15 C -0.693 4.693
16 H 0.099 0.901
17 C -0.191 4.191
18 N -0.547 5.547
19 Si 0.821 3.179
20 H -0.182 1.182
21 H -0.197 1.197
22 H -0.199 1.199
23 C -0.008 4.008
24 C -0.076 4.076
25 S 0.498 5.502
26 H 0.125 0.875
27 H 0.127 0.873
28 H 0.110 0.890
29 H 0.085 0.915
30 H 0.153 0.847
31 H 0.052 0.948
32 H 0.104 0.896
33 H 0.108 0.892
34 H 0.108 0.892
35 H 0.120 0.880
36 H 0.124 0.876
37 H 0.081 0.919
38 H 0.109 0.891
39 H 0.101 0.899
40 H 0.145 0.855
41 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -23.846 -12.979 -20.346 33.927
hybrid contribution -0.204 2.604 0.214 2.621
sum -24.050 -10.374 -20.132 33.036
Atomic orbital electron populations
1.20613 0.81595 1.05870 1.05666 1.29902 1.06055 0.92382 1.02540
1.71442 0.97224 1.28722 1.17142 1.71426 1.07224 1.18903 1.15546
1.29199 1.04281 0.92746 1.04461 1.20647 0.85504 1.03221 0.90288
1.61949 1.28522 1.20834 1.14312 1.22403 1.01594 0.90438 0.93654
1.21958 0.86244 0.96322 0.96505 1.48163 1.16132 1.24392 1.45758
1.20052 0.82433 0.86109 0.79059 1.90669 1.31886 1.56374 1.65092
1.23374 1.04026 0.98321 1.01971 1.85523 1.19699 1.30422 1.56326
1.23208 1.05853 1.07971 1.32317 0.90129 1.26125 0.94093 1.02401
0.96503 1.70182 1.07677 1.40659 1.36139 0.84906 0.78850 0.76446
0.77745 1.18190 1.19744 1.19857 1.21827 1.03148 0.85343 0.90500
1.22518 0.88178 1.00663 0.96241 1.83385 0.94863 1.09072 1.62840
0.87483 0.87268 0.89036 0.91542 0.84685 0.94756 0.89591 0.89189
0.89156 0.87955 0.87624 0.91932 0.89109 0.89856 0.85457 0.94677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.45 10.48 71.23 0.75 0.30 16
2 C -0.03 -0.42 7.53 88.46 0.67 0.24 16
3 N -0.31 -6.83 11.66 -50.85 -0.59 -7.42 16
4 N -0.29 -6.69 10.71 -50.84 -0.54 -7.23 16
5 C -0.03 -0.44 6.17 88.47 0.55 0.11 16
6 C 0.13 1.69 5.57 85.56 0.48 2.17 16
7 N -0.53 -8.33 4.62 -899.83 -4.16 -12.49 16
8 C 0.05 0.98 5.47 86.38 0.47 1.45 16
9 C 0.11 2.53 6.50 86.35 0.56 3.09 16
10 N -0.61 -17.03 3.01 -817.94 -2.46 -19.50 16
11 C 0.54 20.77 7.73 87.66 0.68 21.45 16
12 O -0.56 -26.46 15.32 -3.01 -0.05 -26.51 16
13 C -0.13 -5.25 4.52 71.24 0.32 -4.92 16
14 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16
15 C -0.55 -31.75 9.50 67.95 0.65 -31.11 16
16 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16
17 C 0.01 0.78 5.49 84.86 0.47 1.25 16
18 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16
19 Si 1.00 44.34 29.55 68.60 2.03 46.37 16
20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16
21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16
22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16
23 C 0.11 2.47 6.59 86.35 0.57 3.04 16
24 C 0.05 0.79 5.62 86.39 0.49 1.28 16
25 S 0.25 2.59 23.04 -56.49 -1.30 1.29 16
26 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16
27 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16
28 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
29 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16
30 H 0.14 0.79 7.97 -2.39 -0.02 0.77 16
31 H 0.03 0.79 8.14 -2.39 -0.02 0.78 16
32 H 0.09 1.88 6.36 -2.39 -0.02 1.87 16
33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16
34 H 0.09 2.11 6.02 -2.38 -0.01 2.10 16
35 H 0.10 3.96 7.66 -2.39 -0.02 3.94 16
36 H 0.11 4.03 8.00 -2.40 -0.02 4.01 16
37 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16
38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16
39 H 0.08 2.13 7.07 -2.39 -0.02 2.11 16
40 H 0.13 1.06 7.99 -2.38 -0.02 1.04 16
41 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16
Total: -1.00 -82.92 366.50 -0.27 -83.18
By element:
Atomic # 1 Polarization: 8.57 SS G_CDS: 1.05 Total: 9.62 kcal
Atomic # 6 Polarization: -8.29 SS G_CDS: 6.64 Total: -1.65 kcal
Atomic # 7 Polarization: -95.33 SS G_CDS: -7.47 Total: -102.80 kcal
Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal
Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal
Atomic # 16 Polarization: -5.75 SS G_CDS: -2.46 Total: -8.21 kcal
Total: -82.92 -0.27 -83.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112628929.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.308 kcal
(2) G-P(sol) polarization free energy of solvation -82.917 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds