Wall clock time and date at job start Sat Apr 11 2020 06:28:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30122 * 121.06326 * 2 1
4 4 S 1.69944 * 105.76831 * 180.02562 * 3 2 1
5 5 C 1.72303 * 94.57323 * 0.02562 * 4 3 2
6 6 N 1.38313 * 127.50582 * 180.02562 * 5 4 3
7 7 C 1.46501 * 119.99844 * 359.97044 * 6 5 4
8 8 H 1.08997 * 110.64080 * 34.30568 * 7 6 5
9 9 C 1.55157 * 110.72050 * 271.15638 * 7 6 5
10 10 C 1.55380 * 101.36893 * 277.04557 * 9 7 6
11 11 N 1.47426 * 104.87268 * 323.01454 * 10 9 7
12 12 C 1.34779 * 125.64778 * 204.16452 * 11 10 9
13 13 O 1.21281 * 119.99705 * 179.97438 * 12 11 10
14 14 C 1.50694 * 120.00202 * 359.96891 * 12 11 10
15 15 S 1.80999 * 109.47383 * 179.97438 * 14 12 11
16 16 C 1.76198 * 100.00345 * 179.97438 * 15 14 12
17 17 H 1.07998 * 119.99651 * 359.97438 * 16 15 14
18 18 C 1.38796 * 120.00194 * 179.97438 * 16 15 14
19 19 N 1.31636 * 119.99976 * 179.97438 * 18 16 15
20 20 Si 1.86803 * 119.99940 * 359.97438 * 18 16 15
21 21 H 1.48498 * 109.47174 * 90.00182 * 20 18 16
22 22 H 1.48501 * 109.46714 * 209.99861 * 20 18 16
23 23 H 1.48497 * 109.46810 * 329.99548 * 20 18 16
24 24 C 1.47024 * 108.70351 * 24.13625 * 11 10 9
25 25 H 1.08998 * 109.87883 * 239.52007 * 24 11 10
26 26 C 1.52998 * 109.88395 * 118.35520 * 24 11 10
27 27 N 1.31293 * 121.06178 * 180.02562 * 2 1 3
28 28 H 1.08998 * 109.47186 * 269.97345 * 1 2 3
29 29 H 1.09001 * 109.47295 * 29.97802 * 1 2 3
30 30 H 1.09002 * 109.47010 * 149.97721 * 1 2 3
31 31 H 0.97000 * 120.00134 * 179.97438 * 6 5 4
32 32 H 1.08998 * 111.00084 * 35.21795 * 9 7 6
33 33 H 1.09009 * 111.00034 * 159.06233 * 9 7 6
34 34 H 1.09004 * 110.34246 * 204.17114 * 10 9 7
35 35 H 1.08999 * 110.44469 * 81.91584 * 10 9 7
36 36 H 1.09008 * 109.46675 * 299.99403 * 14 12 11
37 37 H 1.08997 * 109.47826 * 59.99106 * 14 12 11
38 38 H 0.96993 * 119.99488 * 180.02562 * 19 18 16
39 39 H 1.09000 * 109.47299 * 302.19125 * 26 24 11
40 40 H 1.08998 * 109.47163 * 62.19127 * 26 24 11
41 41 H 1.08998 * 109.47328 * 182.18866 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1784 1.1146 0.0000
4 16 3.8177 0.6663 -0.0007
5 6 3.4971 -1.0266 -0.0018
6 7 4.4185 -2.0582 -0.0022
7 6 5.8527 -1.7592 -0.0024
8 1 6.0570 -0.8561 0.5726
9 6 6.3838 -1.6182 -1.4534
10 6 6.6257 -3.1044 -1.8369
11 7 7.1246 -3.7373 -0.6024
12 6 7.8822 -4.8503 -0.5411
13 8 8.2374 -5.2836 0.5346
14 6 8.2879 -5.5564 -1.8090
15 16 9.2934 -7.0042 -1.3982
16 6 9.6175 -7.6211 -3.0165
17 1 9.2191 -7.1083 -3.8796
18 6 10.3846 -8.7658 -3.1822
19 7 10.6262 -9.2269 -4.3913
20 14 11.0741 -9.6522 -1.6894
21 1 10.0998 -10.6724 -1.2257
22 1 12.3508 -10.3171 -2.0546
23 1 11.3201 -8.6718 -0.6016
24 6 6.6593 -2.9529 0.5508
25 1 7.5142 -2.5901 1.1215
26 6 5.7646 -3.8174 1.4413
27 7 2.1844 -1.1247 -0.0005
28 1 -0.3633 -0.0005 1.0276
29 1 -0.3634 0.8902 -0.5135
30 1 -0.3633 -0.8898 -0.5142
31 1 4.1151 -2.9795 -0.0024
32 1 5.6354 -1.1611 -2.1007
33 1 7.3151 -1.0521 -1.4752
34 1 7.3725 -3.1750 -2.6278
35 1 5.6936 -3.5725 -2.1532
36 1 7.3960 -5.8744 -2.3491
37 1 8.8679 -4.8771 -2.4337
38 1 11.1620 -10.0271 -4.5070
39 1 4.9236 -4.1914 0.8576
40 1 6.3407 -4.6580 1.8283
41 1 5.3923 -3.2189 2.2727
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001122942488.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:54
Heat of formation + Delta-G solvation = 30.937845 kcal
Electronic energy + Delta-G solvation = -24549.254487 eV
Core-core repulsion = 20910.621525 eV
Total energy + Delta-G solvation = -3638.632962 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.83670 -40.27232 -38.20977 -35.57493 -32.64701 -32.48778 -31.81983 -30.74851
-29.95580 -28.69707 -26.28770 -25.66910 -24.20406 -23.13895 -21.57392 -20.46962
-19.36038 -18.85800 -17.90065 -17.62289 -16.90278 -16.67304 -15.94213 -15.54155
-15.10912 -14.85659 -14.60379 -14.45277 -14.13717 -13.91668 -13.73131 -13.37775
-13.14727 -12.97989 -12.83313 -12.80990 -12.32015 -12.13765 -12.02858 -11.96389
-11.89744 -11.64732 -11.38237 -11.30147 -11.22920 -11.05464 -10.67580 -9.96656
-9.91167 -9.79120 -9.62587 -9.05501 -8.82937 -8.59487 -8.56656 -6.98744
-6.33842 -4.06488 0.40246 0.63986 1.45887 2.20997 2.36222 2.53825
2.79680 3.06456 3.28970 3.45692 3.51706 3.73742 3.93447 3.93892
4.28043 4.35269 4.58111 4.71530 4.75484 4.88469 4.89798 4.94578
5.05163 5.09683 5.13077 5.16945 5.24605 5.35291 5.38605 5.43117
5.52823 5.58498 5.68941 5.69610 5.91192 5.97635 6.06180 6.20140
6.64688 7.36825 7.42616 7.89067 8.27779 8.36386 9.12066 10.75297
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.029006 B = 0.002120 C = 0.002097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.094874 B =13204.010394 C =13349.682600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C 0.307 3.693
3 N -0.505 5.505
4 S 0.176 5.824
5 C 0.349 3.651
6 N -0.655 5.655
7 C 0.135 3.865
8 H 0.109 0.891
9 C -0.148 4.148
10 C 0.098 3.902
11 N -0.624 5.624
12 C 0.551 3.449
13 O -0.511 6.511
14 C -0.119 4.119
15 S -0.141 6.141
16 C -0.522 4.522
17 H 0.088 0.912
18 C 0.096 3.904
19 N -0.879 5.879
20 Si 0.857 3.143
21 H -0.267 1.267
22 H -0.274 1.274
23 H -0.235 1.235
24 C 0.136 3.864
25 H 0.097 0.903
26 C -0.165 4.165
27 N -0.586 5.586
28 H 0.087 0.913
29 H 0.086 0.914
30 H 0.089 0.911
31 H 0.420 0.580
32 H 0.091 0.909
33 H 0.099 0.901
34 H 0.088 0.912
35 H 0.071 0.929
36 H 0.096 0.904
37 H 0.097 0.903
38 H 0.271 0.729
39 H 0.056 0.944
40 H 0.083 0.917
41 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.811 20.827 8.306 27.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.017 3.983
3 N -0.339 5.339
4 S 0.310 5.690
5 C -0.031 4.031
6 N -0.296 5.296
7 C 0.029 3.971
8 H 0.127 0.873
9 C -0.188 4.188
10 C -0.025 4.025
11 N -0.362 5.362
12 C 0.340 3.660
13 O -0.385 6.385
14 C -0.269 4.269
15 S 0.086 5.914
16 C -0.669 4.669
17 H 0.106 0.894
18 C -0.113 4.113
19 N -0.515 5.515
20 Si 0.682 3.318
21 H -0.192 1.192
22 H -0.199 1.199
23 H -0.159 1.159
24 C 0.032 3.968
25 H 0.115 0.885
26 C -0.223 4.223
27 N -0.321 5.321
28 H 0.106 0.894
29 H 0.104 0.896
30 H 0.107 0.893
31 H 0.263 0.737
32 H 0.110 0.890
33 H 0.117 0.883
34 H 0.106 0.894
35 H 0.089 0.911
36 H 0.114 0.886
37 H 0.115 0.885
38 H 0.081 0.919
39 H 0.074 0.926
40 H 0.102 0.898
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -14.698 21.210 9.793 27.601
hybrid contribution -0.663 -1.294 -1.011 1.771
sum -15.362 19.916 8.782 26.641
Atomic orbital electron populations
1.20410 0.83954 1.04368 1.04130 1.23209 0.99734 0.82176 0.93176
1.77553 0.97179 1.25228 1.33907 1.84961 1.13778 0.97923 1.72381
1.25176 0.90227 0.95449 0.92221 1.44187 1.02841 1.06319 1.76295
1.22317 0.77710 0.99017 0.98051 0.87294 1.23435 1.02957 0.97049
0.95360 1.22421 1.00226 0.91714 0.88120 1.48600 1.53357 1.27332
1.06893 1.19995 0.76402 0.78390 0.91260 1.90708 1.53376 1.63974
1.30453 1.23268 1.04329 1.01841 0.97480 1.84798 1.64779 1.27724
1.14136 1.22287 1.39010 1.15094 0.90555 0.89377 1.24717 0.94565
0.95840 0.96192 1.69937 1.37671 1.22901 1.21026 0.86735 0.79487
0.81746 0.83878 1.19197 1.19893 1.15941 1.21667 0.96749 0.90099
0.88333 0.88520 1.22105 0.99567 1.01437 0.99225 1.67360 1.03030
1.30031 1.31703 0.89436 0.89560 0.89270 0.73748 0.89037 0.88301
0.89413 0.91122 0.88568 0.88456 0.91890 0.92563 0.89836 0.91379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.43 10.42 36.01 0.38 -0.05 16
2 C 0.31 3.08 7.56 -159.04 -1.20 1.87 16
3 N -0.50 -5.53 12.15 29.54 0.36 -5.17 16
4 S 0.18 1.56 22.74 -107.50 -2.44 -0.89 16
5 C 0.35 3.14 8.56 -86.36 -0.74 2.40 16
6 N -0.66 -4.73 4.70 -53.28 -0.25 -4.98 16
7 C 0.13 0.85 3.17 -66.09 -0.21 0.64 16
8 H 0.11 0.54 7.48 -51.93 -0.39 0.15 16
9 C -0.15 -0.87 6.81 -24.33 -0.17 -1.04 16
10 C 0.10 0.82 6.68 -2.27 -0.02 0.80 16
11 N -0.62 -7.06 3.07 -162.72 -0.50 -7.56 16
12 C 0.55 9.02 7.66 -10.99 -0.08 8.94 16
13 O -0.51 -10.15 14.91 5.56 0.08 -10.07 16
14 C -0.12 -2.17 5.16 36.00 0.19 -1.99 16
15 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 16
16 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16
17 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16
18 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16
19 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16
20 Si 0.86 21.37 27.74 -169.99 -4.72 16.65 16
21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16
23 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16
24 C 0.14 1.20 3.43 -66.95 -0.23 0.97 16
25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
26 C -0.17 -1.54 8.47 37.16 0.31 -1.23 16
27 N -0.59 -6.17 10.61 -14.58 -0.15 -6.32 16
28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.42 3.15 6.50 -40.82 -0.27 2.88 16
32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16
34 H 0.09 0.73 7.48 -51.93 -0.39 0.34 16
35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16
37 H 0.10 1.66 7.85 -51.92 -0.41 1.25 16
38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
39 H 0.06 0.50 6.21 -51.93 -0.32 0.17 16
40 H 0.08 1.04 6.91 -51.93 -0.36 0.68 16
41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
LS Contribution 364.90 15.07 5.50 5.50
Total: -1.00 -34.37 364.90 -10.41 -44.78
By element:
Atomic # 1 Polarization: 4.68 SS G_CDS: -5.51 Total: -0.83 kcal
Atomic # 6 Polarization: 1.18 SS G_CDS: -1.56 Total: -0.37 kcal
Atomic # 7 Polarization: -49.57 SS G_CDS: 0.23 Total: -49.34 kcal
Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.65 kcal
Atomic # 16 Polarization: -1.89 SS G_CDS: -4.44 Total: -6.32 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -34.37 -10.41 -44.78 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001122942488.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.715 kcal
(2) G-P(sol) polarization free energy of solvation -34.367 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.348 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.938 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds