Wall clock time and date at job start Sat Apr 11 2020 06:28:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30122 * 121.06326 * 2 1
4 4 S 1.69944 * 105.76831 * 180.02562 * 3 2 1
5 5 C 1.72303 * 94.57323 * 0.02562 * 4 3 2
6 6 N 1.38313 * 127.50582 * 180.02562 * 5 4 3
7 7 C 1.46501 * 119.99844 * 359.97044 * 6 5 4
8 8 H 1.08997 * 110.64080 * 34.30568 * 7 6 5
9 9 C 1.55157 * 110.72050 * 271.15638 * 7 6 5
10 10 C 1.55380 * 101.36893 * 277.04557 * 9 7 6
11 11 N 1.47426 * 104.87268 * 323.01454 * 10 9 7
12 12 C 1.34779 * 125.64778 * 204.16452 * 11 10 9
13 13 O 1.21281 * 119.99705 * 179.97438 * 12 11 10
14 14 C 1.50694 * 120.00202 * 359.96891 * 12 11 10
15 15 S 1.80999 * 109.47383 * 179.97438 * 14 12 11
16 16 C 1.76198 * 100.00345 * 179.97438 * 15 14 12
17 17 H 1.07998 * 119.99651 * 359.97438 * 16 15 14
18 18 C 1.38796 * 120.00194 * 179.97438 * 16 15 14
19 19 N 1.31636 * 119.99976 * 179.97438 * 18 16 15
20 20 Si 1.86803 * 119.99940 * 359.97438 * 18 16 15
21 21 H 1.48498 * 109.47174 * 90.00182 * 20 18 16
22 22 H 1.48501 * 109.46714 * 209.99861 * 20 18 16
23 23 H 1.48497 * 109.46810 * 329.99548 * 20 18 16
24 24 C 1.47024 * 108.70351 * 24.13625 * 11 10 9
25 25 H 1.08998 * 109.87883 * 239.52007 * 24 11 10
26 26 C 1.52998 * 109.88395 * 118.35520 * 24 11 10
27 27 N 1.31293 * 121.06178 * 180.02562 * 2 1 3
28 28 H 1.08998 * 109.47186 * 269.97345 * 1 2 3
29 29 H 1.09001 * 109.47295 * 29.97802 * 1 2 3
30 30 H 1.09002 * 109.47010 * 149.97721 * 1 2 3
31 31 H 0.97000 * 120.00134 * 179.97438 * 6 5 4
32 32 H 1.08998 * 111.00084 * 35.21795 * 9 7 6
33 33 H 1.09009 * 111.00034 * 159.06233 * 9 7 6
34 34 H 1.09004 * 110.34246 * 204.17114 * 10 9 7
35 35 H 1.08999 * 110.44469 * 81.91584 * 10 9 7
36 36 H 1.09008 * 109.46675 * 299.99403 * 14 12 11
37 37 H 1.08997 * 109.47826 * 59.99106 * 14 12 11
38 38 H 0.96993 * 119.99488 * 180.02562 * 19 18 16
39 39 H 1.09000 * 109.47299 * 302.19125 * 26 24 11
40 40 H 1.08998 * 109.47163 * 62.19127 * 26 24 11
41 41 H 1.08998 * 109.47328 * 182.18866 * 26 24 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1784 1.1146 0.0000
4 16 3.8177 0.6663 -0.0007
5 6 3.4971 -1.0266 -0.0018
6 7 4.4185 -2.0582 -0.0022
7 6 5.8527 -1.7592 -0.0024
8 1 6.0570 -0.8561 0.5726
9 6 6.3838 -1.6182 -1.4534
10 6 6.6257 -3.1044 -1.8369
11 7 7.1246 -3.7373 -0.6024
12 6 7.8822 -4.8503 -0.5411
13 8 8.2374 -5.2836 0.5346
14 6 8.2879 -5.5564 -1.8090
15 16 9.2934 -7.0042 -1.3982
16 6 9.6175 -7.6211 -3.0165
17 1 9.2191 -7.1083 -3.8796
18 6 10.3846 -8.7658 -3.1822
19 7 10.6262 -9.2269 -4.3913
20 14 11.0741 -9.6522 -1.6894
21 1 10.0998 -10.6724 -1.2257
22 1 12.3508 -10.3171 -2.0546
23 1 11.3201 -8.6718 -0.6016
24 6 6.6593 -2.9529 0.5508
25 1 7.5142 -2.5901 1.1215
26 6 5.7646 -3.8174 1.4413
27 7 2.1844 -1.1247 -0.0005
28 1 -0.3633 -0.0005 1.0276
29 1 -0.3634 0.8902 -0.5135
30 1 -0.3633 -0.8898 -0.5142
31 1 4.1151 -2.9795 -0.0024
32 1 5.6354 -1.1611 -2.1007
33 1 7.3151 -1.0521 -1.4752
34 1 7.3725 -3.1750 -2.6278
35 1 5.6936 -3.5725 -2.1532
36 1 7.3960 -5.8744 -2.3491
37 1 8.8679 -4.8771 -2.4337
38 1 11.1620 -10.0271 -4.5070
39 1 4.9236 -4.1914 0.8576
40 1 6.3407 -4.6580 1.8283
41 1 5.3923 -3.2189 2.2727
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001122942488.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:54
Heat of formation + Delta-G solvation = 8.331782 kcal
Electronic energy + Delta-G solvation = -24550.234759 eV
Core-core repulsion = 20910.621525 eV
Total energy + Delta-G solvation = -3639.613234 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.66561 -41.03783 -39.27878 -36.39251 -34.67981 -33.49051 -32.53335 -31.68728
-30.53139 -29.87904 -27.85702 -26.99747 -24.84504 -24.03840 -22.24883 -21.20310
-20.45546 -19.63363 -19.50775 -18.54710 -17.84954 -17.62665 -17.12250 -16.64919
-16.62522 -16.09353 -15.74651 -15.30945 -15.08767 -14.91647 -14.79245 -14.61139
-14.13542 -13.97988 -13.76664 -13.46248 -13.34303 -13.29424 -13.03112 -12.89336
-12.77995 -12.76005 -12.59880 -12.52790 -12.26883 -12.06490 -11.90070 -11.87134
-11.17950 -10.96606 -10.67170 -10.54743 -10.45016 -9.81544 -9.23507 -9.00944
-8.52302 -6.23253 -0.27601 -0.03153 0.78903 0.94983 1.30814 1.43058
1.49914 1.50843 1.62343 1.67464 1.99817 2.23907 2.66452 2.86006
3.06774 3.32488 3.33113 3.70577 3.78673 4.04923 4.11376 4.16664
4.25323 4.35195 4.35884 4.40747 4.53481 4.60075 4.70520 4.71166
4.81188 4.84599 4.90135 4.99667 5.15746 5.19485 5.32623 5.46871
5.69883 6.00646 6.10701 6.28229 6.75323 6.92841 7.04334 8.59962
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.029006 B = 0.002120 C = 0.002097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.094874 B =13204.010394 C =13349.682600
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C 0.299 3.701
3 N -0.537 5.537
4 S 0.196 5.804
5 C 0.347 3.653
6 N -0.647 5.647
7 C 0.144 3.856
8 H 0.132 0.868
9 C -0.137 4.137
10 C 0.088 3.912
11 N -0.612 5.612
12 C 0.553 3.447
13 O -0.553 6.553
14 C -0.105 4.105
15 S -0.173 6.173
16 C -0.528 4.528
17 H 0.062 0.938
18 C 0.045 3.955
19 N -0.916 5.916
20 Si 0.914 3.086
21 H -0.263 1.263
22 H -0.260 1.260
23 H -0.236 1.236
24 C 0.133 3.867
25 H 0.101 0.899
26 C -0.160 4.160
27 N -0.608 5.608
28 H 0.099 0.901
29 H 0.094 0.906
30 H 0.095 0.905
31 H 0.420 0.580
32 H 0.103 0.897
33 H 0.116 0.884
34 H 0.091 0.909
35 H 0.077 0.923
36 H 0.107 0.893
37 H 0.112 0.888
38 H 0.277 0.723
39 H 0.060 0.940
40 H 0.050 0.950
41 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.584 22.587 9.063 29.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.010 3.990
3 N -0.372 5.372
4 S 0.330 5.670
5 C -0.032 4.032
6 N -0.288 5.288
7 C 0.039 3.961
8 H 0.150 0.850
9 C -0.176 4.176
10 C -0.034 4.034
11 N -0.347 5.347
12 C 0.341 3.659
13 O -0.431 6.431
14 C -0.255 4.255
15 S 0.053 5.947
16 C -0.675 4.675
17 H 0.080 0.920
18 C -0.161 4.161
19 N -0.554 5.554
20 Si 0.736 3.264
21 H -0.188 1.188
22 H -0.184 1.184
23 H -0.160 1.160
24 C 0.030 3.970
25 H 0.119 0.881
26 C -0.219 4.219
27 N -0.345 5.345
28 H 0.117 0.883
29 H 0.113 0.887
30 H 0.114 0.886
31 H 0.262 0.738
32 H 0.122 0.878
33 H 0.135 0.865
34 H 0.109 0.891
35 H 0.096 0.904
36 H 0.125 0.875
37 H 0.130 0.870
38 H 0.086 0.914
39 H 0.078 0.922
40 H 0.069 0.931
41 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -15.489 23.008 10.529 29.667
hybrid contribution -0.529 -1.708 -1.294 2.207
sum -16.018 21.300 9.234 28.205
Atomic orbital electron populations
1.20542 0.82054 1.05097 1.05097 1.23731 1.01057 0.81851 0.92375
1.77498 0.98408 1.26136 1.35147 1.84762 1.12695 0.97202 1.72388
1.25249 0.90166 0.95887 0.91863 1.44231 1.02949 1.06013 1.75581
1.22347 0.76721 0.98357 0.98674 0.85012 1.23443 1.04160 0.95244
0.94770 1.22716 1.00479 0.93328 0.86901 1.48462 1.51289 1.25697
1.09264 1.19523 0.77174 0.79555 0.89623 1.90697 1.55522 1.65595
1.31281 1.23227 1.03720 0.99430 0.99157 1.84699 1.66673 1.31230
1.12057 1.22440 1.38451 1.15025 0.91627 0.91962 1.25568 0.95012
0.96713 0.98765 1.70017 1.38760 1.23759 1.22882 0.85870 0.79364
0.80583 0.80574 1.18791 1.18412 1.15959 1.21843 0.97235 0.90454
0.87486 0.88110 1.22037 0.99218 1.00669 0.99952 1.67412 1.03794
1.30578 1.32676 0.88254 0.88699 0.88617 0.73816 0.87841 0.86527
0.89109 0.90442 0.87470 0.87009 0.91382 0.92159 0.93121 0.89548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.75 10.42 71.24 0.74 -0.01 16
2 C 0.30 5.56 7.56 139.39 1.05 6.62 16
3 N -0.54 -10.98 12.15 -60.46 -0.73 -11.71 16
4 S 0.20 3.02 22.74 -56.49 -1.28 1.73 16
5 C 0.35 5.43 8.56 178.86 1.53 6.97 16
6 N -0.65 -7.58 4.70 -322.49 -1.52 -9.09 16
7 C 0.14 1.34 3.17 46.18 0.15 1.49 16
8 H 0.13 0.76 7.48 -2.39 -0.02 0.75 16
9 C -0.14 -1.10 6.81 32.15 0.22 -0.88 16
10 C 0.09 1.22 6.68 87.02 0.58 1.80 16
11 N -0.61 -12.67 3.07 -787.11 -2.41 -15.08 16
12 C 0.55 17.62 7.66 87.65 0.67 18.30 16
13 O -0.55 -21.92 14.91 -3.03 -0.05 -21.96 16
14 C -0.10 -3.75 5.16 71.23 0.37 -3.39 16
15 S -0.17 -8.49 18.55 -56.49 -1.05 -9.54 16
16 C -0.53 -30.11 10.04 67.95 0.68 -29.42 16
17 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16
18 C 0.04 2.60 5.50 84.86 0.47 3.06 16
19 N -0.92 -55.11 13.97 21.65 0.30 -54.80 16
20 Si 0.91 44.32 27.74 68.60 1.90 46.22 16
21 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16
22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
23 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16
24 C 0.13 2.05 3.43 45.34 0.16 2.21 16
25 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
26 C -0.16 -2.76 8.47 71.98 0.61 -2.15 16
27 N -0.61 -11.75 10.61 -200.04 -2.12 -13.87 16
28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.42 5.28 6.50 -92.71 -0.60 4.68 16
32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
33 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16
34 H 0.09 1.27 7.48 -2.38 -0.02 1.25 16
35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16
36 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16
37 H 0.11 3.68 7.85 -2.40 -0.02 3.66 16
38 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16
39 H 0.06 0.97 6.21 -2.39 -0.01 0.96 16
40 H 0.05 1.25 6.91 -2.39 -0.02 1.23 16
41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
Total: -1.00 -75.72 364.90 0.70 -75.03
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: 0.43 Total: 8.51 kcal
Atomic # 6 Polarization: -2.65 SS G_CDS: 7.23 Total: 4.58 kcal
Atomic # 7 Polarization: -98.08 SS G_CDS: -6.48 Total: -104.56 kcal
Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.96 kcal
Atomic # 14 Polarization: 44.32 SS G_CDS: 1.90 Total: 46.22 kcal
Atomic # 16 Polarization: -5.48 SS G_CDS: -2.33 Total: -7.81 kcal
Total: -75.72 0.70 -75.03 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001122942488.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.359 kcal
(2) G-P(sol) polarization free energy of solvation -75.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.332 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds