Wall clock time and date at job start Sat Apr 11 2020 06:29:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1
5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1
6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2
7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2
8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3
9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3
10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5
11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5
12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5
13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1
14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2
15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3
16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3
17 17 C 1.53001 * 109.47004 * 180.02562 * 16 14 13
18 18 N 1.46498 * 109.46937 * 180.02562 * 17 16 14
19 19 S 1.65602 * 119.99884 * 164.99955 * 18 17 16
20 20 O 1.42091 * 106.40056 * 178.53751 * 19 18 17
21 21 O 1.42104 * 106.39957 * 311.45891 * 19 18 17
22 22 C 1.76201 * 107.21889 * 64.99674 * 19 18 17
23 23 C 1.38678 * 120.41473 * 269.72388 * 22 19 18
24 24 C 1.38631 * 118.41482 * 179.78677 * 23 22 19
25 25 C 1.38227 * 119.16322 * 0.50534 * 24 23 22
26 26 N 1.31846 * 120.76106 * 359.73434 * 25 24 23
27 27 C 1.31889 * 121.73030 * 359.97438 * 26 25 24
28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3
32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
33 33 H 0.96999 * 120.00301 * 180.02562 * 8 7 5
34 34 H 1.09002 * 109.47054 * 299.99621 * 16 14 13
35 35 H 1.08998 * 109.47040 * 59.99554 * 16 14 13
36 36 H 1.09002 * 109.46791 * 299.99642 * 17 16 14
37 37 H 1.08993 * 109.47159 * 59.99359 * 17 16 14
38 38 H 0.97000 * 119.99711 * 344.99464 * 18 17 16
39 39 H 1.07991 * 120.79527 * 0.02562 * 23 22 19
40 40 H 1.08003 * 120.41890 * 180.22099 * 24 23 22
41 41 H 1.07996 * 119.61504 * 179.75015 * 25 24 23
42 42 H 1.07999 * 119.61877 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6055 1.9814 0.8419
5 6 3.5419 1.4442 0.1239
6 1 4.1473 1.8888 -0.6522
7 6 4.1434 0.8783 1.2280
8 7 3.4063 0.3373 2.1733
9 14 6.0050 0.8799 1.3812
10 1 6.4429 2.1127 2.0836
11 1 6.4391 -0.3112 2.1545
12 1 6.6131 0.8392 0.0269
13 8 1.6559 2.0917 -1.2407
14 6 0.4728 2.7254 -1.2558
15 8 -0.2188 2.7377 -0.2652
16 6 0.0070 3.4217 -2.5087
17 6 -1.3611 4.0596 -2.2590
18 7 -1.8141 4.7359 -3.4771
19 16 -3.3986 5.1921 -3.6303
20 8 -3.5088 5.8430 -4.8885
21 8 -4.1786 4.0603 -3.2698
22 6 -3.7086 6.4204 -2.4057
23 6 -4.1580 6.0573 -1.1450
24 6 -4.3842 7.0573 -0.2119
25 6 -4.1660 8.3744 -0.5699
26 7 -3.7431 8.6832 -1.7799
27 6 -3.5120 7.7580 -2.6910
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5139 0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 3.8293 -0.0605 2.9503
34 1 0.7240 4.1959 -2.7820
35 1 -0.0719 2.6971 -3.3191
36 1 -2.0783 3.2857 -1.9855
37 1 -1.2817 4.7842 -1.4487
38 1 -1.1858 4.9165 -4.1937
39 1 -4.3241 5.0199 -0.8948
40 1 -4.7310 6.8107 0.7807
41 1 -4.3438 9.1596 0.1500
42 1 -3.1657 8.0493 -3.6716
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000787086958.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:25
Heat of formation + Delta-G solvation = -132.447091 kcal
Electronic energy + Delta-G solvation = -27371.631253 eV
Core-core repulsion = 23250.867766 eV
Total energy + Delta-G solvation = -4120.763487 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.51240 -39.80686 -37.59764 -36.54071 -36.18810 -35.45316 -33.57331 -33.10799
-31.93219 -31.48681 -30.48297 -27.34185 -24.48775 -24.43437 -24.10076 -23.05067
-20.83365 -20.03996 -19.44758 -18.53952 -17.85578 -17.25454 -17.04998 -16.92389
-16.70397 -16.18469 -15.76910 -15.25556 -14.94299 -14.65803 -14.56536 -14.50813
-14.30182 -13.67482 -13.14555 -13.09695 -12.89554 -12.66388 -12.45650 -12.35886
-12.23215 -11.93704 -11.75465 -11.59041 -11.45622 -11.34446 -11.22713 -10.98995
-10.71939 -10.66722 -10.33479 -10.09878 -9.92839 -9.87072 -9.80615 -9.69846
-9.43565 -8.86827 -8.51065 -6.23946 -4.31315 -0.07074 0.23537 0.72036
2.56022 2.87805 3.10906 3.20470 3.26468 3.29851 3.41061 3.60907
3.89442 3.92764 4.28485 4.33155 4.37956 4.50049 4.63043 4.83723
4.92102 5.08090 5.13689 5.21846 5.26997 5.34997 5.51362 5.66781
5.71054 5.84590 6.05175 6.18578 6.24830 6.40652 6.58866 6.81310
6.91042 7.11027 7.19418 7.30880 7.56054 7.67932 7.87849 8.09826
8.53786 8.81429 9.34180 10.82716
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.017007 B = 0.002432 C = 0.002338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1645.959189 B =11509.046181 C =11971.234140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.136 4.136
3 C 0.222 3.778
4 H 0.048 0.952
5 C -0.523 4.523
6 H 0.068 0.932
7 C 0.063 3.937
8 N -0.887 5.887
9 Si 0.911 3.089
10 H -0.278 1.278
11 H -0.284 1.284
12 H -0.271 1.271
13 O -0.354 6.354
14 C 0.455 3.545
15 O -0.517 6.517
16 C -0.125 4.125
17 C 0.126 3.874
18 N -1.115 6.115
19 S 2.707 3.293
20 O -0.955 6.955
21 O -0.949 6.949
22 C -0.737 4.737
23 C 0.028 3.972
24 C -0.191 4.191
25 C 0.152 3.848
26 N -0.498 5.498
27 C 0.201 3.799
28 H 0.032 0.968
29 H 0.053 0.947
30 H 0.033 0.967
31 H 0.109 0.891
32 H 0.042 0.958
33 H 0.267 0.733
34 H 0.108 0.892
35 H 0.109 0.891
36 H 0.093 0.907
37 H 0.075 0.925
38 H 0.421 0.579
39 H 0.155 0.845
40 H 0.148 0.852
41 H 0.165 0.835
42 H 0.173 0.827
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.758 12.131 -8.168 20.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.174 4.174
3 C 0.169 3.831
4 H 0.066 0.934
5 C -0.561 4.561
6 H 0.087 0.913
7 C -0.139 4.139
8 N -0.525 5.525
9 Si 0.738 3.262
10 H -0.204 1.204
11 H -0.209 1.209
12 H -0.196 1.196
13 O -0.270 6.270
14 C 0.297 3.703
15 O -0.408 6.408
16 C -0.164 4.164
17 C 0.001 3.999
18 N -0.876 5.876
19 S 2.793 3.207
20 O -0.945 6.945
21 O -0.938 6.938
22 C -0.824 4.824
23 C 0.001 3.999
24 C -0.212 4.212
25 C -0.004 4.004
26 N -0.207 5.207
27 C 0.042 3.958
28 H 0.051 0.949
29 H 0.072 0.928
30 H 0.052 0.948
31 H 0.127 0.873
32 H 0.061 0.939
33 H 0.077 0.923
34 H 0.126 0.874
35 H 0.128 0.872
36 H 0.111 0.889
37 H 0.094 0.906
38 H 0.257 0.743
39 H 0.173 0.827
40 H 0.166 0.834
41 H 0.182 0.818
42 H 0.190 0.810
Dipole moment (debyes) X Y Z Total
from point charges -14.500 12.533 -8.291 20.882
hybrid contribution 1.242 -0.400 0.892 1.580
sum -13.258 12.133 -7.400 19.436
Atomic orbital electron populations
1.21862 0.98295 0.99124 1.00727 1.22022 0.92690 0.99304 1.03422
1.20704 0.95037 0.88811 0.78519 0.93441 1.21038 0.89674 1.39102
1.06283 0.91342 1.24887 0.99271 0.94704 0.95074 1.69886 1.35432
1.37752 1.09432 0.86281 0.83830 0.77711 0.78366 1.20421 1.20929
1.19585 1.86474 1.33973 1.62272 1.44308 1.22937 0.81100 0.77149
0.89099 1.90624 1.55498 1.58709 1.35965 1.21422 0.96825 1.01579
0.96587 1.21122 0.96591 0.97228 0.85004 1.55473 1.30122 1.74236
1.27814 1.01644 0.72413 0.73562 0.73048 1.93607 1.85373 1.76597
1.38920 1.93618 1.67669 1.48374 1.84177 1.32019 1.18928 1.15161
1.16316 1.21480 0.86934 1.01384 0.90115 1.22338 1.03101 0.94189
1.01554 1.23222 0.88644 0.95767 0.92812 1.67867 1.12888 1.37522
1.02412 1.22626 0.88079 0.86849 0.98292 0.94925 0.92792 0.94752
0.87327 0.93939 0.92346 0.87399 0.87248 0.88882 0.90628 0.74338
0.82702 0.83392 0.81758 0.80999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.99 8.57 37.16 0.32 -2.67 16
2 C -0.14 -3.26 5.49 -26.74 -0.15 -3.41 16
3 C 0.22 5.62 2.25 -27.89 -0.06 5.56 16
4 H 0.05 1.33 7.16 -51.93 -0.37 0.96 16
5 C -0.52 -14.13 8.90 -34.44 -0.31 -14.44 16
6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16
7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16
8 N -0.89 -24.38 11.29 55.43 0.63 -23.75 16
9 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16
10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16
12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
13 O -0.35 -7.78 9.81 -39.26 -0.39 -8.16 16
14 C 0.46 8.30 6.41 36.01 0.23 8.53 16
15 O -0.52 -10.57 13.13 -18.74 -0.25 -10.82 16
16 C -0.12 -1.47 5.95 -27.88 -0.17 -1.63 16
17 C 0.13 1.33 5.51 -4.04 -0.02 1.30 16
18 N -1.12 -9.09 6.00 -10.62 -0.06 -9.16 16
19 S 2.71 26.20 5.75 -107.50 -0.62 25.59 16
20 O -0.95 -10.92 17.31 -57.17 -0.99 -11.91 16
21 O -0.95 -11.97 16.82 -57.17 -0.96 -12.94 16
22 C -0.74 -6.87 5.96 -39.44 -0.24 -7.11 16
23 C 0.03 0.24 9.65 -39.27 -0.38 -0.13 16
24 C -0.19 -1.44 10.11 -39.44 -0.40 -1.84 16
25 C 0.15 1.20 11.18 -17.55 -0.20 1.00 16
26 N -0.50 -4.99 10.36 -13.26 -0.14 -5.13 16
27 C 0.20 1.90 10.69 -17.55 -0.19 1.71 16
28 H 0.03 0.64 6.06 -51.93 -0.31 0.33 16
29 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16
30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
31 H 0.11 2.84 5.95 -51.93 -0.31 2.53 16
32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16
33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16
34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16
36 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16
37 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16
38 H 0.42 2.43 8.65 -34.48 -0.30 2.13 16
39 H 0.16 1.21 7.70 -52.49 -0.40 0.80 16
40 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16
41 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16
42 H 0.17 1.30 7.63 -52.49 -0.40 0.90 16
LS Contribution 368.86 15.07 5.56 5.56
Total: -1.00 -34.65 368.86 -9.29 -43.94
By element:
Atomic # 1 Polarization: 8.26 SS G_CDS: -5.41 Total: 2.85 kcal
Atomic # 6 Polarization: -9.89 SS G_CDS: -1.65 Total: -11.54 kcal
Atomic # 7 Polarization: -38.46 SS G_CDS: 0.43 Total: -38.04 kcal
Atomic # 8 Polarization: -41.24 SS G_CDS: -2.58 Total: -43.82 kcal
Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal
Atomic # 16 Polarization: 26.20 SS G_CDS: -0.62 Total: 25.59 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -34.65 -9.29 -43.94 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787086958.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -88.503 kcal
(2) G-P(sol) polarization free energy of solvation -34.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.157 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.447 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds