Wall clock time and date at job start Sat Apr 11 2020 06:29:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1
5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1
6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2
7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2
8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3
9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3
10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5
11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5
12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5
13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1
14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2
15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3
16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3
17 17 C 1.53001 * 109.47004 * 180.02562 * 16 14 13
18 18 N 1.46498 * 109.46937 * 180.02562 * 17 16 14
19 19 S 1.65602 * 119.99884 * 164.99955 * 18 17 16
20 20 O 1.42091 * 106.40056 * 178.53751 * 19 18 17
21 21 O 1.42104 * 106.39957 * 311.45891 * 19 18 17
22 22 C 1.76201 * 107.21889 * 64.99674 * 19 18 17
23 23 C 1.38678 * 120.41473 * 269.72388 * 22 19 18
24 24 C 1.38631 * 118.41482 * 179.78677 * 23 22 19
25 25 C 1.38227 * 119.16322 * 0.50534 * 24 23 22
26 26 N 1.31846 * 120.76106 * 359.73434 * 25 24 23
27 27 C 1.31889 * 121.73030 * 359.97438 * 26 25 24
28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3
32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
33 33 H 0.96999 * 120.00301 * 180.02562 * 8 7 5
34 34 H 1.09002 * 109.47054 * 299.99621 * 16 14 13
35 35 H 1.08998 * 109.47040 * 59.99554 * 16 14 13
36 36 H 1.09002 * 109.46791 * 299.99642 * 17 16 14
37 37 H 1.08993 * 109.47159 * 59.99359 * 17 16 14
38 38 H 0.97000 * 119.99711 * 344.99464 * 18 17 16
39 39 H 1.07991 * 120.79527 * 0.02562 * 23 22 19
40 40 H 1.08003 * 120.41890 * 180.22099 * 24 23 22
41 41 H 1.07996 * 119.61504 * 179.75015 * 25 24 23
42 42 H 1.07999 * 119.61877 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6055 1.9814 0.8419
5 6 3.5419 1.4442 0.1239
6 1 4.1473 1.8888 -0.6522
7 6 4.1434 0.8783 1.2280
8 7 3.4063 0.3373 2.1733
9 14 6.0050 0.8799 1.3812
10 1 6.4429 2.1127 2.0836
11 1 6.4391 -0.3112 2.1545
12 1 6.6131 0.8392 0.0269
13 8 1.6559 2.0917 -1.2407
14 6 0.4728 2.7254 -1.2558
15 8 -0.2188 2.7377 -0.2652
16 6 0.0070 3.4217 -2.5087
17 6 -1.3611 4.0596 -2.2590
18 7 -1.8141 4.7359 -3.4771
19 16 -3.3986 5.1921 -3.6303
20 8 -3.5088 5.8430 -4.8885
21 8 -4.1786 4.0603 -3.2698
22 6 -3.7086 6.4204 -2.4057
23 6 -4.1580 6.0573 -1.1450
24 6 -4.3842 7.0573 -0.2119
25 6 -4.1660 8.3744 -0.5699
26 7 -3.7431 8.6832 -1.7799
27 6 -3.5120 7.7580 -2.6910
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8933 -0.5139 0.8900
32 1 1.8934 -0.5138 -0.8899
33 1 3.8293 -0.0605 2.9503
34 1 0.7240 4.1959 -2.7820
35 1 -0.0719 2.6971 -3.3191
36 1 -2.0783 3.2857 -1.9855
37 1 -1.2817 4.7842 -1.4487
38 1 -1.1858 4.9165 -4.1937
39 1 -4.3241 5.0199 -0.8948
40 1 -4.7310 6.8107 0.7807
41 1 -4.3438 9.1596 0.1500
42 1 -3.1657 8.0493 -3.6716
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787086958.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:23
Heat of formation + Delta-G solvation = -157.535613 kcal
Electronic energy + Delta-G solvation = -27372.719173 eV
Core-core repulsion = 23250.867766 eV
Total energy + Delta-G solvation = -4121.851407 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.37002 -41.15121 -38.47988 -37.93093 -37.07245 -36.62484 -35.47370 -33.76885
-33.36065 -32.56145 -31.53587 -29.25112 -25.74375 -25.13484 -24.86689 -24.62935
-22.36449 -21.27271 -20.70904 -19.33671 -18.87086 -18.52634 -18.45566 -17.77940
-17.69291 -17.43110 -17.05516 -16.68069 -16.18003 -15.77722 -15.58876 -15.35386
-15.12172 -14.79097 -14.68182 -14.32906 -13.99853 -13.73603 -13.55634 -13.33876
-13.32463 -13.23230 -13.16207 -13.11513 -12.83934 -12.80590 -12.63197 -12.52421
-12.31717 -12.12837 -11.72179 -11.42530 -11.35817 -11.21501 -10.81760 -10.77511
-10.56976 -10.52183 -10.49188 -8.26016 -6.42284 -0.81495 -0.45841 0.07097
1.41783 1.43272 1.44581 1.55529 1.72476 2.19658 2.42663 2.47088
2.70214 3.03946 3.14590 3.34598 3.56688 3.73791 3.76971 3.95199
4.03389 4.09706 4.25020 4.37842 4.41352 4.43856 4.48420 4.59526
4.63933 4.71540 4.79019 4.87879 4.91842 4.98227 5.13333 5.24891
5.43212 5.45807 5.54147 5.70730 6.00489 6.03447 6.18954 6.63126
6.66851 7.03353 7.29826 8.80380
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.017007 B = 0.002432 C = 0.002338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1645.959189 B =11509.046181 C =11971.234140
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.131 4.131
3 C 0.226 3.774
4 H 0.010 0.990
5 C -0.549 4.549
6 H 0.066 0.934
7 C 0.017 3.983
8 N -0.914 5.914
9 Si 0.978 3.022
10 H -0.273 1.273
11 H -0.278 1.278
12 H -0.264 1.264
13 O -0.364 6.364
14 C 0.446 3.554
15 O -0.543 6.543
16 C -0.113 4.113
17 C 0.130 3.870
18 N -1.101 6.101
19 S 2.729 3.271
20 O -0.972 6.972
21 O -0.979 6.979
22 C -0.740 4.740
23 C 0.010 3.990
24 C -0.190 4.190
25 C 0.146 3.854
26 N -0.520 5.520
27 C 0.189 3.811
28 H 0.041 0.959
29 H 0.037 0.963
30 H 0.058 0.942
31 H 0.083 0.917
32 H 0.045 0.955
33 H 0.270 0.730
34 H 0.137 0.863
35 H 0.135 0.865
36 H 0.083 0.917
37 H 0.077 0.923
38 H 0.435 0.565
39 H 0.161 0.839
40 H 0.175 0.825
41 H 0.195 0.805
42 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.473 12.849 -8.871 20.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.169 4.169
3 C 0.172 3.828
4 H 0.028 0.972
5 C -0.587 4.587
6 H 0.084 0.916
7 C -0.182 4.182
8 N -0.552 5.552
9 Si 0.801 3.199
10 H -0.199 1.199
11 H -0.203 1.203
12 H -0.188 1.188
13 O -0.281 6.281
14 C 0.290 3.710
15 O -0.434 6.434
16 C -0.152 4.152
17 C 0.003 3.997
18 N -0.865 5.865
19 S 2.817 3.183
20 O -0.962 6.962
21 O -0.969 6.969
22 C -0.829 4.829
23 C -0.017 4.017
24 C -0.210 4.210
25 C -0.009 4.009
26 N -0.230 5.230
27 C 0.030 3.970
28 H 0.061 0.939
29 H 0.056 0.944
30 H 0.077 0.923
31 H 0.102 0.898
32 H 0.063 0.937
33 H 0.079 0.921
34 H 0.155 0.845
35 H 0.153 0.847
36 H 0.102 0.898
37 H 0.095 0.905
38 H 0.273 0.727
39 H 0.178 0.822
40 H 0.192 0.808
41 H 0.212 0.788
42 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -14.227 13.255 -9.037 21.442
hybrid contribution 1.075 -0.549 1.150 1.667
sum -13.152 12.706 -7.887 19.915
Atomic orbital electron populations
1.21722 0.96097 1.00585 1.00362 1.21867 0.94613 0.98212 1.02214
1.20335 0.94337 0.89278 0.78827 0.97232 1.21353 0.90783 1.39778
1.06760 0.91598 1.25766 1.03981 0.93985 0.94511 1.70010 1.37331
1.38023 1.09829 0.85254 0.78064 0.77912 0.78635 1.19852 1.20278
1.18770 1.86458 1.36194 1.63038 1.42401 1.24170 0.79557 0.76335
0.90939 1.90614 1.55750 1.59412 1.37631 1.21537 0.97753 1.02356
0.93555 1.21000 0.95705 0.97179 0.85796 1.55158 1.29839 1.73890
1.27602 1.00778 0.72174 0.72886 0.72457 1.93580 1.85697 1.76813
1.40108 1.93579 1.68786 1.49923 1.84604 1.31856 1.19830 1.14856
1.16394 1.21747 0.87313 1.02217 0.90412 1.22681 1.02131 0.93748
1.02437 1.23789 0.87582 0.96885 0.92674 1.67904 1.13755 1.37974
1.03359 1.22888 0.88273 0.86895 0.98946 0.93949 0.94408 0.92314
0.89829 0.93666 0.92121 0.84461 0.84725 0.89824 0.90473 0.72713
0.82188 0.80750 0.78787 0.79839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.43 8.57 71.98 0.62 -4.82 16
2 C -0.13 -6.35 5.49 30.59 0.17 -6.18 16
3 C 0.23 11.70 2.25 29.85 0.07 11.77 16
4 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16
5 C -0.55 -30.10 8.90 25.60 0.23 -29.87 16
6 H 0.07 3.54 7.81 -2.91 -0.02 3.52 16
7 C 0.02 0.93 5.29 84.65 0.45 1.38 16
8 N -0.91 -51.09 11.29 21.45 0.24 -50.85 16
9 Si 0.98 41.81 29.54 68.60 2.03 43.84 16
10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16
11 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16
12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16
13 O -0.36 -16.00 9.81 -51.41 -0.50 -16.50 16
14 C 0.45 15.98 6.41 71.24 0.46 16.44 16
15 O -0.54 -22.34 13.13 21.98 0.29 -22.05 16
16 C -0.11 -2.40 5.95 29.85 0.18 -2.22 16
17 C 0.13 2.51 5.51 86.38 0.48 2.98 16
18 N -1.10 -15.95 6.00 -187.50 -1.12 -17.07 16
19 S 2.73 50.42 5.75 -56.49 -0.32 50.10 16
20 O -0.97 -21.30 17.31 -128.00 -2.22 -23.52 16
21 O -0.98 -24.26 16.82 -128.00 -2.15 -26.41 16
22 C -0.74 -13.22 5.96 22.36 0.13 -13.09 16
23 C 0.01 0.16 9.65 22.47 0.22 0.38 16
24 C -0.19 -2.54 10.11 22.36 0.23 -2.32 16
25 C 0.15 2.06 11.18 84.69 0.95 3.00 16
26 N -0.52 -9.83 10.36 -195.86 -2.03 -11.86 16
27 C 0.19 3.41 10.69 84.67 0.90 4.32 16
28 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16
29 H 0.04 1.67 7.80 -2.39 -0.02 1.65 16
30 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16
31 H 0.08 4.49 5.95 -2.39 -0.01 4.47 16
32 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16
33 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16
34 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16
35 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16
36 H 0.08 1.82 7.71 -2.39 -0.02 1.80 16
37 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16
38 H 0.43 3.92 8.65 -96.74 -0.84 3.08 16
39 H 0.16 2.41 7.70 -2.92 -0.02 2.39 16
40 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16
41 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16
42 H 0.18 2.63 7.63 -2.91 -0.02 2.61 16
Total: -1.00 -75.95 368.86 -0.51 -76.46
By element:
Atomic # 1 Polarization: 15.88 SS G_CDS: 0.22 Total: 16.09 kcal
Atomic # 6 Polarization: -23.29 SS G_CDS: 5.07 Total: -18.22 kcal
Atomic # 7 Polarization: -76.87 SS G_CDS: -2.91 Total: -79.78 kcal
Atomic # 8 Polarization: -83.89 SS G_CDS: -4.58 Total: -88.48 kcal
Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal
Atomic # 16 Polarization: 50.42 SS G_CDS: -0.32 Total: 50.10 kcal
Total: -75.95 -0.51 -76.46 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787086958.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.080 kcal
(2) G-P(sol) polarization free energy of solvation -75.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds