Wall clock time and date at job start Sat Apr 11 2020 06:29:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53005 * 109.46888 * 2 1
4 4 H 1.08992 * 109.47241 * 305.00471 * 3 2 1
5 5 C 1.50700 * 109.46995 * 185.00084 * 3 2 1
6 6 H 1.07999 * 120.00235 * 240.00266 * 5 3 2
7 7 C 1.37883 * 119.99692 * 60.00225 * 5 3 2
8 8 N 1.31509 * 120.00317 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 119.99576 * 179.97438 * 7 5 3
10 10 H 1.48494 * 109.47563 * 359.97438 * 9 7 5
11 11 H 1.48503 * 109.47127 * 120.00197 * 9 7 5
12 12 H 1.48508 * 109.47106 * 239.99952 * 9 7 5
13 13 O 1.45203 * 109.46814 * 65.00717 * 3 2 1
14 14 C 1.34711 * 116.99456 * 269.99286 * 13 3 2
15 15 O 1.21470 * 120.00308 * 0.02562 * 14 13 3
16 16 C 1.47723 * 119.99690 * 179.97438 * 14 13 3
17 17 C 1.40076 * 120.56200 * 180.02562 * 16 14 13
18 18 C 1.38345 * 118.28099 * 179.71070 * 17 16 14
19 19 C 1.38367 * 119.31020 * 0.55824 * 18 17 16
20 20 S 1.76199 * 119.45697 * 179.70549 * 19 18 17
21 21 O 1.42100 * 106.40198 * 23.26736 * 20 19 18
22 22 O 1.42096 * 106.39959 * 156.18801 * 20 19 18
23 23 N 1.65599 * 107.21658 * 269.72791 * 20 19 18
24 24 C 1.46499 * 120.00337 * 89.99803 * 23 20 19
25 25 C 1.46502 * 119.99727 * 269.99791 * 23 20 19
26 26 N 1.31933 * 121.08434 * 359.42755 * 19 18 17
27 27 C 1.31676 * 121.88912 * 0.27723 * 26 19 18
28 28 H 1.09008 * 109.46805 * 299.99653 * 1 2 3
29 29 H 1.08998 * 109.47302 * 59.99661 * 1 2 3
30 30 H 1.09002 * 109.46822 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47078 * 240.00826 * 2 1 3
32 32 H 1.08993 * 109.47641 * 120.00019 * 2 1 3
33 33 H 0.96996 * 120.00057 * 180.02562 * 8 7 5
34 34 H 1.07997 * 120.86128 * 359.97438 * 17 16 14
35 35 H 1.08005 * 120.34523 * 180.25696 * 18 17 16
36 36 H 1.09004 * 109.46766 * 89.99921 * 24 23 20
37 37 H 1.09001 * 109.47517 * 209.99796 * 24 23 20
38 38 H 1.08997 * 109.47269 * 330.00330 * 24 23 20
39 39 H 1.09004 * 109.46955 * 90.00036 * 25 23 20
40 40 H 1.09003 * 109.47115 * 210.00083 * 25 23 20
41 41 H 1.08994 * 109.47486 * 330.00188 * 25 23 20
42 42 H 1.08005 * 119.72011 * 180.02562 * 27 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6053 1.9816 -0.8417
5 6 3.5418 1.4444 -0.1239
6 1 4.1472 1.8889 0.6523
7 6 4.1432 0.8785 -1.2281
8 7 3.4061 0.3376 -2.1734
9 14 6.0048 0.8814 -1.3819
10 1 6.5986 1.5474 -0.1950
11 1 6.4970 -0.5173 -1.4632
12 1 6.3989 1.6170 -2.6104
13 8 1.6559 2.0916 1.2408
14 6 0.4685 2.7277 1.2561
15 8 -0.2272 2.7394 0.2605
16 6 0.0120 3.4100 2.4842
17 6 -1.2208 4.0745 2.5135
18 6 -1.6046 4.6925 3.6903
19 6 -0.7615 4.6450 4.7864
20 16 -1.2429 5.4374 6.2847
21 8 -2.6605 5.5310 6.2516
22 8 -0.5311 4.7877 7.3289
23 7 -0.6702 6.9900 6.2240
24 6 -1.4976 8.0542 5.6503
25 6 0.6640 7.2994 6.7441
26 7 0.3944 4.0115 4.7299
27 6 0.8014 3.4032 3.6352
28 1 -0.3633 0.5138 0.8901
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 3.8292 -0.0608 -2.9500
34 1 -1.8572 4.1000 1.6413
35 1 -2.5502 5.2108 3.7512
36 1 -2.1070 8.5033 6.4346
37 1 -0.8552 8.8157 5.2083
38 1 -2.1465 7.6352 4.8812
39 1 1.3990 7.1908 5.9465
40 1 0.6803 8.3238 7.1163
41 1 0.9054 6.6139 7.5563
42 1 1.7542 2.8947 3.6280
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787093025.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:40
Heat of formation + Delta-G solvation = -139.922219 kcal
Electronic energy + Delta-G solvation = -27685.151965 eV
Core-core repulsion = 23564.064332 eV
Total energy + Delta-G solvation = -4121.087632 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.01197 -40.81452 -38.55601 -37.80132 -37.21032 -37.03748 -35.60143 -34.03655
-33.51503 -32.95576 -29.42025 -28.96765 -26.88199 -25.62720 -25.20717 -24.99968
-22.93739 -21.62073 -20.54254 -19.57583 -19.19490 -18.80599 -18.54074 -17.93475
-17.57938 -17.23557 -16.91989 -16.47755 -16.15561 -15.57992 -15.46720 -15.41136
-15.04799 -14.86234 -14.63944 -14.36619 -14.13205 -14.02084 -13.57698 -13.47417
-13.38367 -13.35719 -13.28400 -13.17715 -12.87031 -12.74318 -12.65082 -12.60458
-12.51107 -12.16082 -11.88577 -11.73392 -11.47151 -11.40654 -10.97470 -10.88777
-10.86048 -10.56414 -10.11643 -8.30159 -6.46622 -1.25963 -0.86421 -0.17984
1.16901 1.41224 1.42158 1.54356 1.69535 1.76451 2.24474 2.37452
2.51872 2.73785 3.00265 3.41511 3.43245 3.53429 3.69286 3.77755
3.82674 4.20062 4.33394 4.34788 4.40313 4.50916 4.54167 4.57414
4.73047 4.77946 4.79540 4.97071 5.00947 5.03912 5.05002 5.06591
5.15332 5.27821 5.48043 5.48868 5.62124 5.86086 6.03284 6.19404
6.53727 6.78446 7.23981 8.76779
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.019152 B = 0.002606 C = 0.002439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1461.669189 B =10742.626651 C =11477.588989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.131 4.131
3 C 0.227 3.773
4 H 0.014 0.986
5 C -0.549 4.549
6 H 0.068 0.932
7 C 0.020 3.980
8 N -0.913 5.913
9 Si 0.979 3.021
10 H -0.264 1.264
11 H -0.273 1.273
12 H -0.276 1.276
13 O -0.352 6.352
14 C 0.496 3.504
15 O -0.522 6.522
16 C -0.128 4.128
17 C -0.024 4.024
18 C -0.086 4.086
19 C -0.436 4.436
20 S 2.718 3.282
21 O -0.953 6.953
22 O -0.961 6.961
23 N -0.993 5.993
24 C 0.075 3.925
25 C 0.075 3.925
26 N -0.412 5.412
27 C 0.134 3.866
28 H 0.034 0.966
29 H 0.040 0.960
30 H 0.061 0.939
31 H 0.089 0.911
32 H 0.047 0.953
33 H 0.271 0.729
34 H 0.176 0.824
35 H 0.199 0.801
36 H 0.076 0.924
37 H 0.097 0.903
38 H 0.081 0.919
39 H 0.060 0.940
40 H 0.108 0.892
41 H 0.076 0.924
42 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.572 15.603 15.160 23.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.170 4.170
3 C 0.174 3.826
4 H 0.032 0.968
5 C -0.587 4.587
6 H 0.086 0.914
7 C -0.181 4.181
8 N -0.551 5.551
9 Si 0.803 3.197
10 H -0.188 1.188
11 H -0.198 1.198
12 H -0.202 1.202
13 O -0.268 6.268
14 C 0.340 3.660
15 O -0.413 6.413
16 C -0.131 4.131
17 C -0.051 4.051
18 C -0.107 4.107
19 C -0.652 4.652
20 S 2.801 3.199
21 O -0.942 6.942
22 O -0.951 6.951
23 N -0.836 5.836
24 C -0.069 4.069
25 C -0.070 4.070
26 N -0.122 5.122
27 C -0.027 4.027
28 H 0.053 0.947
29 H 0.059 0.941
30 H 0.080 0.920
31 H 0.107 0.893
32 H 0.065 0.935
33 H 0.080 0.920
34 H 0.193 0.807
35 H 0.216 0.784
36 H 0.094 0.906
37 H 0.116 0.884
38 H 0.100 0.900
39 H 0.079 0.921
40 H 0.127 0.873
41 H 0.095 0.905
42 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges -9.660 15.112 16.063 24.077
hybrid contribution 0.733 -0.558 -2.239 2.421
sum -8.927 14.554 13.824 21.968
Atomic orbital electron populations
1.21732 0.96302 1.00762 1.00081 1.21898 0.94452 0.98015 1.02588
1.20504 0.94749 0.89287 0.78062 0.96830 1.21337 0.90291 1.40068
1.06968 0.91388 1.25756 1.04065 0.93857 0.94381 1.69999 1.37347
1.37845 1.09868 0.85183 0.77873 0.78278 0.78384 1.18786 1.19825
1.20197 1.86515 1.34497 1.62604 1.43158 1.21224 0.80461 0.76591
0.87766 1.90789 1.55634 1.58938 1.35934 1.20654 0.98038 1.00964
0.93452 1.22150 0.92944 0.90169 0.99832 1.22326 1.00940 0.96829
0.90584 1.34412 0.98865 1.10173 1.21775 1.01740 0.72882 0.72707
0.72597 1.93603 1.27837 1.86440 1.86356 1.93556 1.74441 1.74583
1.52526 1.57141 1.27872 1.23326 1.75256 1.21933 0.95036 0.90477
0.99466 1.21872 0.80722 1.04686 0.99694 1.67916 1.13150 1.04824
1.26288 1.23632 0.99573 0.93052 0.86424 0.94716 0.94122 0.91994
0.89287 0.93465 0.91973 0.80662 0.78437 0.90574 0.88417 0.90029
0.92080 0.87313 0.90478 0.79670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.57 8.56 71.98 0.62 -4.95 16
2 C -0.13 -6.41 5.49 30.60 0.17 -6.24 16
3 C 0.23 11.85 2.25 29.85 0.07 11.92 16
4 H 0.01 0.81 7.16 -2.39 -0.02 0.79 16
5 C -0.55 -30.07 8.90 25.60 0.23 -29.84 16
6 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16
7 C 0.02 1.04 5.29 84.66 0.45 1.49 16
8 N -0.91 -50.73 11.29 21.45 0.24 -50.48 16
9 Si 0.98 41.83 29.54 68.60 2.03 43.86 16
10 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16
11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16
13 O -0.35 -16.05 9.08 -56.21 -0.51 -16.56 16
14 C 0.50 19.84 6.36 70.33 0.45 20.29 16
15 O -0.52 -22.85 13.60 19.93 0.27 -22.58 16
16 C -0.13 -3.96 5.89 -20.00 -0.12 -4.07 16
17 C -0.02 -0.59 9.72 22.74 0.22 -0.36 16
18 C -0.09 -1.68 9.54 22.33 0.21 -1.47 16
19 C -0.44 -10.08 6.86 84.71 0.58 -9.50 16
20 S 2.72 55.66 5.71 -56.49 -0.32 55.33 16
21 O -0.95 -20.74 16.31 -128.00 -2.09 -22.82 16
22 O -0.96 -26.22 16.45 -128.00 -2.11 -28.32 16
23 N -0.99 -13.49 3.58 -562.68 -2.02 -15.50 16
24 C 0.07 0.57 10.29 127.77 1.31 1.89 16
25 C 0.07 0.85 10.66 127.77 1.36 2.21 16
26 N -0.41 -11.51 10.09 -192.18 -1.94 -13.45 16
27 C 0.13 3.97 10.79 85.04 0.92 4.88 16
28 H 0.03 1.40 6.06 -2.38 -0.01 1.39 16
29 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16
30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16
31 H 0.09 4.75 5.95 -2.39 -0.01 4.74 16
32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16
33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16
34 H 0.18 3.62 7.74 -2.91 -0.02 3.60 16
35 H 0.20 2.27 7.59 -2.91 -0.02 2.25 16
36 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16
37 H 0.10 0.36 8.07 -2.39 -0.02 0.34 16
38 H 0.08 0.49 7.79 -2.39 -0.02 0.48 16
39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
40 H 0.11 0.60 8.07 -2.39 -0.02 0.58 16
41 H 0.08 1.07 7.02 -2.39 -0.02 1.05 16
42 H 0.19 5.35 7.62 -2.91 -0.02 5.33 16
Total: -1.00 -72.17 367.13 1.07 -71.10
By element:
Atomic # 1 Polarization: 12.16 SS G_CDS: 1.04 Total: 13.20 kcal
Atomic # 6 Polarization: -20.24 SS G_CDS: 6.47 Total: -13.77 kcal
Atomic # 7 Polarization: -75.72 SS G_CDS: -3.71 Total: -79.44 kcal
Atomic # 8 Polarization: -85.85 SS G_CDS: -4.43 Total: -90.29 kcal
Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal
Atomic # 16 Polarization: 55.66 SS G_CDS: -0.32 Total: 55.33 kcal
Total: -72.17 1.07 -71.10 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787093025.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.821 kcal
(2) G-P(sol) polarization free energy of solvation -72.170 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds