Wall clock time and date at job start Sat Apr 11 2020 06:31:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 108.57181 * 2 1
4 4 C 1.53998 * 108.71979 * 241.88161 * 2 1 3
5 5 N 1.44683 * 109.43209 * 158.00411 * 4 2 1
6 6 C 1.34774 * 119.72783 * 278.48064 * 5 4 2
7 7 O 1.21587 * 119.99715 * 5.31768 * 6 5 4
8 8 N 1.34775 * 119.99953 * 185.32590 * 6 5 4
9 9 C 1.46498 * 119.99953 * 185.21147 * 8 6 5
10 10 H 1.09008 * 109.47079 * 324.99560 * 9 8 6
11 11 C 1.50695 * 109.47120 * 204.99816 * 9 8 6
12 12 H 1.07995 * 120.00284 * 245.03767 * 11 9 8
13 13 C 1.37884 * 120.00097 * 65.03798 * 11 9 8
14 14 N 1.31516 * 120.00147 * 185.03523 * 13 11 9
15 15 Si 1.86795 * 120.00017 * 5.04214 * 13 11 9
16 16 H 1.48505 * 109.47194 * 265.04103 * 15 13 11
17 17 H 1.48492 * 109.47306 * 145.03596 * 15 13 11
18 18 H 1.48509 * 109.47140 * 25.03428 * 15 13 11
19 19 C 1.52996 * 109.47482 * 84.99551 * 9 8 6
20 20 F 1.39896 * 109.47539 * 174.99902 * 19 9 8
21 21 F 1.39905 * 109.47342 * 295.00470 * 19 9 8
22 22 F 1.39902 * 109.46934 * 55.00167 * 19 9 8
23 23 C 1.46385 * 120.54256 * 98.75472 * 5 4 2
24 24 C 1.54171 * 114.75114 * 317.10144 * 23 5 4
25 25 S 1.79950 * 111.28275 * 317.23277 * 24 23 5
26 26 O 1.42101 * 109.46780 * 200.42329 * 25 24 23
27 27 C 1.45820 * 108.72410 * 118.12299 * 2 1 3
28 28 H 1.08999 * 109.46802 * 178.12440 * 1 2 3
29 29 H 1.08998 * 109.46864 * 298.11936 * 1 2 3
30 30 H 1.08994 * 109.47038 * 58.12064 * 1 2 3
31 31 H 1.09003 * 109.47492 * 38.01928 * 4 2 1
32 32 H 1.08992 * 109.47595 * 277.99445 * 4 2 1
33 33 H 0.96996 * 120.00035 * 5.21031 * 8 6 5
34 34 H 0.96994 * 120.00105 * 179.97438 * 14 13 11
35 35 H 1.08999 * 108.39066 * 78.64217 * 23 5 4
36 36 H 1.09005 * 108.38557 * 195.80150 * 23 5 4
37 37 H 1.08999 * 109.13913 * 196.72213 * 24 23 5
38 38 H 1.09002 * 108.96025 * 77.63136 * 24 23 5
39 39 H 1.09000 * 108.84511 * 306.93504 * 27 2 1
40 40 H 1.09001 * 108.84257 * 65.29441 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8772 1.0333 0.0000
4 6 2.0242 -0.6874 -1.2864
5 7 3.3769 -0.2602 -1.5712
6 6 3.5893 0.9179 -2.1904
7 8 2.6547 1.6609 -2.4205
8 7 4.8375 1.2723 -2.5547
9 6 5.0856 2.5993 -3.1237
10 1 4.2320 2.8994 -3.7316
11 6 6.3229 2.5542 -3.9827
12 1 7.1974 3.1214 -3.7001
13 6 6.3385 1.7889 -5.1295
14 7 7.4479 1.6702 -5.8258
15 14 4.7840 0.9206 -5.6942
16 1 4.7841 -0.4749 -5.1864
17 1 4.7357 0.9074 -7.1782
18 1 3.5962 1.6391 -5.1665
19 6 5.2865 3.6098 -1.9926
20 9 5.6357 4.8518 -2.5333
21 9 4.0992 3.7357 -1.2633
22 9 6.3085 3.1656 -1.1466
23 6 4.5164 -1.0997 -1.1977
24 6 4.4181 -1.7351 0.2036
25 16 3.8069 -0.5533 1.4152
26 8 4.1650 -0.9855 2.7207
27 6 1.9981 -0.6510 1.2180
28 1 -0.3633 -1.0271 -0.0336
29 1 -0.3633 0.4843 0.9064
30 1 -0.3633 0.5427 -0.8726
31 1 1.3741 -0.4138 -2.1174
32 1 2.0055 -1.7687 -1.1508
33 1 5.5716 0.6487 -2.4402
34 1 7.4590 1.1315 -6.6323
35 1 4.6123 -1.8971 -1.9347
36 1 5.4196 -0.4907 -1.2367
37 1 5.4054 -2.0817 0.5089
38 1 3.7384 -2.5861 0.1597
39 1 1.5240 -0.1747 2.0762
40 1 1.7028 -1.6999 1.1923
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000932897579.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:22
Heat of formation + Delta-G solvation = -232.818060 kcal
Electronic energy + Delta-G solvation = -30511.687851 eV
Core-core repulsion = 25844.715212 eV
Total energy + Delta-G solvation = -4666.972639 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.101 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-50.72767 -48.24095 -48.20511 -41.44329 -38.39722 -36.85193 -36.48033 -35.94464
-34.24476 -31.86922 -30.81404 -28.32617 -27.18102 -26.80534 -24.54980 -23.08979
-21.87854 -20.79799 -20.00558 -19.18417 -18.98789 -18.64517 -18.34910 -18.21595
-17.59464 -16.86338 -16.60748 -16.23982 -16.04215 -15.58044 -15.22274 -15.12301
-15.03522 -14.78700 -14.73203 -14.67427 -14.52009 -14.41312 -14.35181 -14.31923
-14.04220 -13.67849 -13.53878 -13.20507 -12.97160 -12.81187 -12.65649 -12.41870
-12.17458 -12.07186 -11.88144 -11.78185 -11.64365 -11.22311 -10.99759 -10.86567
-10.13353 -9.58566 -9.12218 -8.44050 -6.61016 0.42710 1.31777 1.42616
1.54063 1.56920 1.68863 2.03143 2.25772 2.36095 2.71510 2.76686
3.15242 3.34834 3.53404 3.59162 3.71431 3.74330 3.90893 4.02011
4.24407 4.43878 4.44664 4.54371 4.65725 4.67848 4.76902 4.81073
4.85449 4.94947 5.07112 5.20543 5.32874 5.38241 5.54699 5.71451
5.90117 6.05553 6.54334 7.06730 7.09994 7.64717 8.67904
Molecular weight = 342.10amu
Principal moments of inertia in cm(-1)
A = 0.013047 B = 0.005099 C = 0.004725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2145.542757 B = 5489.723958 C = 5924.427304
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.083 4.083
3 H 0.074 0.926
4 C 0.126 3.874
5 N -0.627 5.627
6 C 0.695 3.305
7 O -0.604 6.604
8 N -0.732 5.732
9 C 0.227 3.773
10 H 0.081 0.919
11 C -0.535 4.535
12 H 0.064 0.936
13 C 0.063 3.937
14 N -0.904 5.904
15 Si 0.927 3.073
16 H -0.253 1.253
17 H -0.292 1.292
18 H -0.259 1.259
19 C 0.443 3.557
20 F -0.190 7.190
21 F -0.187 7.187
22 F -0.184 7.184
23 C 0.130 3.870
24 C -0.445 4.445
25 S 1.238 4.762
26 O -0.917 6.917
27 C -0.411 4.411
28 H 0.067 0.933
29 H 0.060 0.940
30 H 0.055 0.945
31 H 0.078 0.922
32 H 0.105 0.895
33 H 0.408 0.592
34 H 0.277 0.723
35 H 0.093 0.907
36 H 0.092 0.908
37 H 0.133 0.867
38 H 0.111 0.889
39 H 0.112 0.888
40 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.990 -7.834 8.548 15.305
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.104 4.104
3 H 0.092 0.908
4 C 0.003 3.997
5 N -0.364 5.364
6 C 0.397 3.603
7 O -0.483 6.483
8 N -0.391 5.391
9 C 0.121 3.879
10 H 0.099 0.901
11 C -0.573 4.573
12 H 0.083 0.917
13 C -0.142 4.142
14 N -0.539 5.539
15 Si 0.752 3.248
16 H -0.178 1.178
17 H -0.219 1.219
18 H -0.183 1.183
19 C 0.388 3.612
20 F -0.171 7.171
21 F -0.169 7.169
22 F -0.166 7.166
23 C 0.006 3.994
24 C -0.584 4.584
25 S 1.442 4.558
26 O -0.913 6.913
27 C -0.549 4.549
28 H 0.086 0.914
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.097 0.903
32 H 0.123 0.877
33 H 0.248 0.752
34 H 0.087 0.913
35 H 0.111 0.889
36 H 0.110 0.890
37 H 0.151 0.849
38 H 0.130 0.870
39 H 0.130 0.870
40 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -9.987 -6.822 8.940 15.040
hybrid contribution -0.629 -2.356 0.245 2.451
sum -10.615 -9.178 9.186 16.772
Atomic orbital electron populations
1.21814 0.93047 1.02510 1.02211 1.19844 0.97645 1.00700 0.92180
0.90787 1.21511 0.81414 0.99780 0.97019 1.46894 1.07976 1.19772
1.61743 1.16292 0.83648 0.81788 0.78541 1.90890 1.42513 1.52912
1.61969 1.46552 1.08600 1.17529 1.66383 1.19769 1.00065 0.79932
0.88133 0.90097 1.20753 0.98074 1.31111 1.07358 0.91742 1.25441
0.98204 0.95348 0.95255 1.69961 1.28186 1.38829 1.16970 0.85988
0.80959 0.80564 0.77309 1.17762 1.21898 1.18295 1.21384 0.73205
0.82234 0.84419 1.93099 1.92236 1.45651 1.86140 1.93154 1.47530
1.96303 1.79899 1.93093 1.60776 1.89230 1.73464 1.21240 0.88695
0.95783 0.93664 1.27741 1.10925 1.12709 1.07047 1.70583 0.88705
1.11330 0.85229 1.92988 1.79308 1.83319 1.35680 1.26240 1.17734
1.06909 1.04055 0.91428 0.92142 0.92580 0.90342 0.87681 0.75213
0.91326 0.88929 0.88974 0.84924 0.86993 0.87012 0.88288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.19 8.93 71.98 0.64 -1.55 16
2 C -0.08 -1.53 2.30 -12.66 -0.03 -1.56 16
3 H 0.07 1.71 7.52 -2.38 -0.02 1.69 16
4 C 0.13 2.42 4.59 87.06 0.40 2.82 16
5 N -0.63 -14.64 2.40 -840.36 -2.01 -16.66 16
6 C 0.70 22.74 7.32 179.06 1.31 24.05 16
7 O -0.60 -23.56 14.51 -3.99 -0.06 -23.61 16
8 N -0.73 -25.66 3.10 -461.42 -1.43 -27.09 16
9 C 0.23 9.49 1.42 44.24 0.06 9.56 16
10 H 0.08 3.67 5.98 -2.38 -0.01 3.65 16
11 C -0.53 -25.84 8.62 25.60 0.22 -25.62 16
12 H 0.06 3.48 7.95 -2.91 -0.02 3.46 16
13 C 0.06 3.11 5.47 84.66 0.46 3.57 16
14 N -0.90 -48.05 13.96 21.45 0.30 -47.75 16
15 Si 0.93 39.02 26.39 68.60 1.81 40.83 16
16 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16
17 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16
18 H -0.26 -11.27 6.25 99.48 0.62 -10.65 16
19 C 0.44 17.74 2.79 71.98 0.20 17.94 16
20 F -0.19 -7.94 16.86 44.97 0.76 -7.18 16
21 F -0.19 -7.21 16.05 44.97 0.72 -6.49 16
22 F -0.18 -7.01 16.97 44.97 0.76 -6.25 16
23 C 0.13 2.30 5.84 86.80 0.51 2.81 16
24 C -0.44 -6.95 5.88 72.38 0.43 -6.52 16
25 S 1.24 25.97 13.05 -56.49 -0.74 25.23 16
26 O -0.92 -30.25 18.14 -148.98 -2.70 -32.95 16
27 C -0.41 -7.05 4.98 69.78 0.35 -6.71 16
28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
29 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16
30 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16
31 H 0.08 1.73 7.50 -2.39 -0.02 1.71 16
32 H 0.11 1.36 7.52 -2.39 -0.02 1.34 16
33 H 0.41 12.72 6.24 -92.71 -0.58 12.14 16
34 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16
35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
36 H 0.09 1.64 5.85 -2.38 -0.01 1.63 16
37 H 0.13 1.94 8.14 -2.47 -0.02 1.92 16
38 H 0.11 1.39 7.91 -2.47 -0.02 1.37 16
39 H 0.11 1.92 7.99 -2.39 -0.02 1.90 16
40 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16
Total: -1.00 -67.72 341.47 2.39 -65.33
By element:
Atomic # 1 Polarization: 17.37 SS G_CDS: 0.43 Total: 17.80 kcal
Atomic # 6 Polarization: 14.24 SS G_CDS: 4.55 Total: 18.79 kcal
Atomic # 7 Polarization: -88.35 SS G_CDS: -3.15 Total: -91.50 kcal
Atomic # 8 Polarization: -53.80 SS G_CDS: -2.76 Total: -56.56 kcal
Atomic # 9 Polarization: -22.16 SS G_CDS: 2.24 Total: -19.91 kcal
Atomic # 14 Polarization: 39.02 SS G_CDS: 1.81 Total: 40.83 kcal
Atomic # 16 Polarization: 25.97 SS G_CDS: -0.74 Total: 25.23 kcal
Total: -67.72 2.39 -65.33 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000932897579.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -167.492 kcal
(2) G-P(sol) polarization free energy of solvation -67.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.326 kcal
(6) G-S(sol) free energy of system = (1) + (5) -232.818 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds