Wall clock time and date at job start Sat Apr 11 2020 06:32:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.46979 * 2 1
4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3
5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1
6 6 C 1.38316 * 119.99974 * 179.97438 * 5 4 2
7 7 N 1.31625 * 127.50184 * 179.97438 * 6 5 4
8 8 C 1.31292 * 116.79478 * 179.97438 * 7 6 5
9 9 C 1.50698 * 121.06813 * 180.02562 * 8 7 6
10 10 C 1.52999 * 117.49985 * 188.75222 * 9 8 7
11 11 C 1.52998 * 117.50226 * 120.08982 * 9 8 7
12 12 N 1.30131 * 117.87255 * 0.02562 * 8 7 6
13 13 S 1.69952 * 105.76351 * 359.73536 * 12 8 7
14 14 N 1.46499 * 109.47288 * 119.99801 * 2 1 3
15 15 C 1.34777 * 120.00199 * 275.00460 * 14 2 1
16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2
17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2
18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14
19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15
20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17
21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17
22 22 N 1.31630 * 120.00506 * 180.02562 * 21 19 18
23 23 Si 1.86809 * 119.99909 * 359.97438 * 21 19 18
24 24 H 1.48497 * 109.47104 * 90.00095 * 23 21 19
25 25 H 1.48502 * 109.46943 * 210.00235 * 23 21 19
26 26 H 1.48497 * 109.46910 * 330.00035 * 23 21 19
27 27 H 1.08993 * 109.47268 * 180.02562 * 1 2 3
28 28 H 1.09006 * 109.47495 * 300.00247 * 1 2 3
29 29 H 1.09007 * 109.47320 * 60.00143 * 1 2 3
30 30 H 1.09006 * 109.46830 * 304.99500 * 4 2 1
31 31 H 1.08994 * 109.47535 * 64.99592 * 4 2 1
32 32 H 0.97002 * 119.99978 * 359.97438 * 5 4 2
33 33 H 1.09002 * 115.54353 * 334.41780 * 9 8 7
34 34 H 1.08997 * 117.50052 * 359.97438 * 10 9 8
35 35 H 1.08997 * 117.49752 * 145.02166 * 10 9 8
36 36 H 1.08999 * 117.49737 * 214.98612 * 11 9 8
37 37 H 1.09003 * 117.49693 * 359.97398 * 11 9 8
38 38 H 0.97000 * 119.99484 * 94.99557 * 14 2 1
39 39 H 1.09004 * 109.46965 * 299.72211 * 17 15 14
40 40 H 1.08994 * 109.46990 * 59.72065 * 17 15 14
41 41 H 0.97002 * 120.00159 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7211 -1.2493
5 7 3.5001 -0.8263 -1.1906
6 6 4.1907 -1.4449 -2.2170
7 7 5.4915 -1.6198 -2.3162
8 6 5.9252 -2.2400 -3.3890
9 6 7.3958 -2.4921 -3.6005
10 6 7.8309 -3.0338 -4.9636
11 6 7.8512 -3.9466 -3.7349
12 7 5.0445 -2.6302 -4.2640
13 16 3.5348 -2.1605 -3.6406
14 7 2.0183 -0.6906 1.1962
15 6 2.1470 -0.0182 2.3572
16 8 1.8589 1.1586 2.4115
17 6 2.6553 -0.7271 3.5861
18 16 2.7223 0.4375 4.9700
19 6 3.3309 -0.6263 6.2359
20 1 3.5396 -1.6629 6.0161
21 6 3.5431 -0.1319 7.5153
22 7 3.9982 -0.9265 8.4609
23 14 3.1842 1.6616 7.8950
24 1 1.7754 1.8002 8.3436
25 1 4.0945 2.1318 8.9699
26 1 3.3973 2.4784 6.6734
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 1.6054 -1.7198 -1.2952
31 1 1.7516 -0.1583 -2.1370
32 1 3.9824 -0.4622 -0.4319
33 1 8.0688 -1.7985 -3.0963
34 1 7.0534 -3.2083 -5.7073
35 1 8.7904 -2.6970 -5.3561
36 1 8.8239 -4.2098 -3.3195
37 1 7.0870 -4.7212 -3.6700
38 1 2.2490 -1.6317 1.1526
39 1 1.9840 -1.5491 3.8351
40 1 3.6536 -1.1193 3.3925
41 1 4.1462 -0.5810 9.3552
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001107627639.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:29
Heat of formation + Delta-G solvation = 42.339612 kcal
Electronic energy + Delta-G solvation = -23652.472113 eV
Core-core repulsion = 20014.333569 eV
Total energy + Delta-G solvation = -3638.138544 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.62847 -39.84857 -37.81832 -36.81541 -34.78055 -32.48581 -32.05993 -31.15987
-28.86045 -27.28741 -25.67043 -25.56576 -22.81920 -22.71177 -22.09462 -20.64563
-19.87052 -19.18854 -17.99452 -17.35876 -16.89124 -16.56304 -16.20055 -15.77114
-15.51013 -15.17528 -15.01691 -14.73796 -14.40731 -13.76346 -13.55941 -13.40153
-13.15810 -13.02833 -12.84199 -12.34172 -12.11826 -12.00810 -12.00017 -11.74647
-11.69529 -11.41868 -11.31544 -11.05215 -10.90218 -10.84596 -10.67143 -9.91410
-9.90748 -9.71389 -9.63284 -9.29424 -9.04613 -8.57319 -8.54948 -6.98140
-6.33171 -4.05878 0.43037 0.66813 1.46713 2.24632 2.31422 2.63602
2.78714 3.16902 3.29211 3.45905 3.53883 3.55275 3.80090 3.99260
4.28450 4.47389 4.49882 4.60137 4.63954 4.73693 4.78490 4.91682
5.02389 5.05824 5.12253 5.16384 5.29451 5.35210 5.41105 5.54684
5.63983 5.66586 5.71649 5.80364 5.87881 5.92715 6.07088 6.29537
6.68627 7.36934 7.49433 7.89690 8.29251 8.37374 9.12651 10.76008
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.013824 B = 0.002200 C = 0.001958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2024.932478 B =12726.549372 C =14298.599680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.136 3.864
3 H 0.101 0.899
4 C 0.108 3.892
5 N -0.665 5.665
6 C 0.348 3.652
7 N -0.579 5.579
8 C 0.341 3.659
9 C -0.084 4.084
10 C -0.156 4.156
11 C -0.154 4.154
12 N -0.503 5.503
13 S 0.176 5.824
14 N -0.738 5.738
15 C 0.534 3.466
16 O -0.514 6.514
17 C -0.126 4.126
18 S -0.140 6.140
19 C -0.523 4.523
20 H 0.088 0.912
21 C 0.096 3.904
22 N -0.879 5.879
23 Si 0.857 3.143
24 H -0.267 1.267
25 H -0.274 1.274
26 H -0.236 1.236
27 H 0.062 0.938
28 H 0.074 0.926
29 H 0.069 0.931
30 H 0.083 0.917
31 H 0.091 0.909
32 H 0.422 0.578
33 H 0.133 0.867
34 H 0.106 0.894
35 H 0.103 0.897
36 H 0.106 0.894
37 H 0.097 0.903
38 H 0.401 0.599
39 H 0.098 0.902
40 H 0.098 0.902
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.796 -4.054 -27.501 27.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.030 3.970
3 H 0.119 0.881
4 C -0.016 4.016
5 N -0.305 5.305
6 C -0.032 4.032
7 N -0.314 5.314
8 C 0.053 3.947
9 C -0.107 4.107
10 C -0.194 4.194
11 C -0.193 4.193
12 N -0.336 5.336
13 S 0.310 5.690
14 N -0.394 5.394
15 C 0.320 3.680
16 O -0.388 6.388
17 C -0.276 4.276
18 S 0.086 5.914
19 C -0.670 4.670
20 H 0.106 0.894
21 C -0.113 4.113
22 N -0.515 5.515
23 Si 0.682 3.318
24 H -0.192 1.192
25 H -0.199 1.199
26 H -0.160 1.160
27 H 0.081 0.919
28 H 0.093 0.907
29 H 0.088 0.912
30 H 0.101 0.899
31 H 0.109 0.891
32 H 0.262 0.738
33 H 0.151 0.849
34 H 0.125 0.875
35 H 0.122 0.878
36 H 0.124 0.876
37 H 0.116 0.884
38 H 0.236 0.764
39 H 0.116 0.884
40 H 0.116 0.884
41 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -1.960 -2.574 -28.230 28.414
hybrid contribution 1.131 -0.729 1.472 1.994
sum -0.830 -3.303 -26.758 26.974
Atomic orbital electron populations
1.22133 0.93414 1.02905 1.03638 1.21084 0.95359 0.97966 0.82586
0.88147 1.22153 0.77345 1.02430 0.99683 1.43947 1.06349 1.59567
1.20600 1.25139 0.91051 0.92780 0.94242 1.67208 1.10543 1.27959
1.25669 1.22119 0.96980 0.90930 0.84711 1.20410 0.87323 0.99603
1.03411 1.23069 1.03252 1.02341 0.90739 1.23051 1.03118 0.91535
1.01621 1.77458 0.96749 1.32097 1.27269 1.84901 1.17224 1.54080
1.12840 1.46123 1.69648 1.14222 1.09379 1.20330 0.76721 0.87192
0.83730 1.90716 1.48137 1.15638 1.84263 1.23290 1.04516 1.03593
0.96233 1.84786 1.86990 1.16329 1.03263 1.22300 1.50614 0.98683
0.95418 0.89366 1.24720 0.93336 0.98307 0.94959 1.69935 1.43131
1.35828 1.02649 0.86735 0.79319 0.85181 0.80597 1.19199 1.19896
1.15951 0.91876 0.90673 0.91204 0.89928 0.89139 0.73836 0.84947
0.87515 0.87821 0.87579 0.88426 0.76428 0.88406 0.88382 0.91886
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.17 9.48 37.16 0.35 -0.82 16
2 C 0.14 1.07 2.73 -67.93 -0.19 0.88 16
3 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16
4 C 0.11 0.61 5.29 -4.04 -0.02 0.59 16
5 N -0.66 -5.33 5.53 -61.57 -0.34 -5.67 16
6 C 0.35 3.53 8.57 -86.36 -0.74 2.79 16
7 N -0.58 -7.07 10.61 -14.57 -0.15 -7.22 16
8 C 0.34 3.96 7.22 -159.03 -1.15 2.81 16
9 C -0.08 -0.76 6.28 -91.77 -0.58 -1.34 16
10 C -0.16 -1.13 10.05 -26.69 -0.27 -1.39 16
11 C -0.15 -1.14 10.24 -26.69 -0.27 -1.41 16
12 N -0.50 -5.85 11.31 29.54 0.33 -5.51 16
13 S 0.18 1.66 23.17 -107.50 -2.49 -0.83 16
14 N -0.74 -7.36 4.52 -53.81 -0.24 -7.60 16
15 C 0.53 8.25 7.81 -10.98 -0.09 8.17 16
16 O -0.51 -9.86 15.52 5.55 0.09 -9.77 16
17 C -0.13 -2.25 6.16 36.01 0.22 -2.03 16
18 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16
19 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16
20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16
21 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16
22 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16
23 Si 0.86 21.42 27.74 -169.99 -4.72 16.71 16
24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
26 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16
27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.42 3.74 8.26 -40.82 -0.34 3.40 16
33 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16
34 H 0.11 0.88 7.65 -51.93 -0.40 0.48 16
35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16
38 H 0.40 3.17 8.60 -40.82 -0.35 2.82 16
39 H 0.10 1.64 8.14 -51.91 -0.42 1.21 16
40 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16
41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16
LS Contribution 379.23 15.07 5.71 5.71
Total: -1.00 -34.62 379.23 -11.24 -45.86
By element:
Atomic # 1 Polarization: 8.42 SS G_CDS: -5.71 Total: 2.71 kcal
Atomic # 6 Polarization: -1.02 SS G_CDS: -2.51 Total: -3.53 kcal
Atomic # 7 Polarization: -51.84 SS G_CDS: 0.37 Total: -51.46 kcal
Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.71 kcal
Atomic # 16 Polarization: -1.75 SS G_CDS: -4.48 Total: -6.23 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -34.62 -11.24 -45.86 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001107627639.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.204 kcal
(2) G-P(sol) polarization free energy of solvation -34.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.243 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.865 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds