Wall clock time and date at job start Sat Apr 11 2020 06:32:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.46979 * 2 1
4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3
5 5 N 1.46501 * 109.47252 * 185.00253 * 4 2 1
6 6 C 1.38316 * 119.99974 * 179.97438 * 5 4 2
7 7 N 1.31625 * 127.50184 * 179.97438 * 6 5 4
8 8 C 1.31292 * 116.79478 * 179.97438 * 7 6 5
9 9 C 1.50698 * 121.06813 * 180.02562 * 8 7 6
10 10 C 1.52999 * 117.49985 * 188.75222 * 9 8 7
11 11 C 1.52998 * 117.50226 * 120.08982 * 9 8 7
12 12 N 1.30131 * 117.87255 * 0.02562 * 8 7 6
13 13 S 1.69952 * 105.76351 * 359.73536 * 12 8 7
14 14 N 1.46499 * 109.47288 * 119.99801 * 2 1 3
15 15 C 1.34777 * 120.00199 * 275.00460 * 14 2 1
16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 2
17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 2
18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14
19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15
20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17
21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17
22 22 N 1.31630 * 120.00506 * 180.02562 * 21 19 18
23 23 Si 1.86809 * 119.99909 * 359.97438 * 21 19 18
24 24 H 1.48497 * 109.47104 * 90.00095 * 23 21 19
25 25 H 1.48502 * 109.46943 * 210.00235 * 23 21 19
26 26 H 1.48497 * 109.46910 * 330.00035 * 23 21 19
27 27 H 1.08993 * 109.47268 * 180.02562 * 1 2 3
28 28 H 1.09006 * 109.47495 * 300.00247 * 1 2 3
29 29 H 1.09007 * 109.47320 * 60.00143 * 1 2 3
30 30 H 1.09006 * 109.46830 * 304.99500 * 4 2 1
31 31 H 1.08994 * 109.47535 * 64.99592 * 4 2 1
32 32 H 0.97002 * 119.99978 * 359.97438 * 5 4 2
33 33 H 1.09002 * 115.54353 * 334.41780 * 9 8 7
34 34 H 1.08997 * 117.50052 * 359.97438 * 10 9 8
35 35 H 1.08997 * 117.49752 * 145.02166 * 10 9 8
36 36 H 1.08999 * 117.49737 * 214.98612 * 11 9 8
37 37 H 1.09003 * 117.49693 * 359.97398 * 11 9 8
38 38 H 0.97000 * 119.99484 * 94.99557 * 14 2 1
39 39 H 1.09004 * 109.46965 * 299.72211 * 17 15 14
40 40 H 1.08994 * 109.46990 * 59.72065 * 17 15 14
41 41 H 0.97002 * 120.00159 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7211 -1.2493
5 7 3.5001 -0.8263 -1.1906
6 6 4.1907 -1.4449 -2.2170
7 7 5.4915 -1.6198 -2.3162
8 6 5.9252 -2.2400 -3.3890
9 6 7.3958 -2.4921 -3.6005
10 6 7.8309 -3.0338 -4.9636
11 6 7.8512 -3.9466 -3.7349
12 7 5.0445 -2.6302 -4.2640
13 16 3.5348 -2.1605 -3.6406
14 7 2.0183 -0.6906 1.1962
15 6 2.1470 -0.0182 2.3572
16 8 1.8589 1.1586 2.4115
17 6 2.6553 -0.7271 3.5861
18 16 2.7223 0.4375 4.9700
19 6 3.3309 -0.6263 6.2359
20 1 3.5396 -1.6629 6.0161
21 6 3.5431 -0.1319 7.5153
22 7 3.9982 -0.9265 8.4609
23 14 3.1842 1.6616 7.8950
24 1 1.7754 1.8002 8.3436
25 1 4.0945 2.1318 8.9699
26 1 3.3973 2.4784 6.6734
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 1.6054 -1.7198 -1.2952
31 1 1.7516 -0.1583 -2.1370
32 1 3.9824 -0.4622 -0.4319
33 1 8.0688 -1.7985 -3.0963
34 1 7.0534 -3.2083 -5.7073
35 1 8.7904 -2.6970 -5.3561
36 1 8.8239 -4.2098 -3.3195
37 1 7.0870 -4.7212 -3.6700
38 1 2.2490 -1.6317 1.1526
39 1 1.9840 -1.5491 3.8351
40 1 3.6536 -1.1193 3.3925
41 1 4.1462 -0.5810 9.3552
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001107627639.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:29
Heat of formation + Delta-G solvation = 18.618083 kcal
Electronic energy + Delta-G solvation = -23653.500756 eV
Core-core repulsion = 20014.333569 eV
Total energy + Delta-G solvation = -3639.167187 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.39176 -40.92693 -38.60713 -37.52131 -35.63953 -34.68159 -33.02974 -31.99821
-30.10773 -27.93998 -27.86113 -26.21354 -23.51394 -23.29315 -22.92032 -21.69575
-20.61545 -20.01010 -19.80824 -18.16862 -18.02352 -17.53256 -17.09516 -16.88648
-16.54412 -16.47477 -16.20267 -15.91259 -15.35225 -15.05313 -14.80634 -14.52489
-14.13462 -14.05544 -13.74189 -13.37486 -13.34359 -13.02871 -12.99012 -12.72868
-12.64723 -12.62258 -12.41782 -12.31746 -12.06146 -11.87500 -11.54266 -11.43753
-11.18069 -11.02649 -10.70340 -10.54883 -10.37340 -10.26326 -9.24077 -9.00038
-8.52470 -6.23161 -0.32993 -0.07883 0.71937 0.98091 1.30625 1.45264
1.51439 1.53989 1.54824 1.61965 2.17147 2.24272 2.69845 2.85842
2.92390 3.13577 3.37770 3.83104 3.85714 3.95940 4.03668 4.14407
4.17064 4.24821 4.38694 4.43121 4.46650 4.51799 4.67477 4.75526
4.76549 4.97584 4.98776 5.10291 5.24784 5.26776 5.40259 5.43701
5.69515 5.95612 6.10595 6.38092 6.73461 6.92646 7.14366 8.59938
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.013824 B = 0.002200 C = 0.001958
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2024.932478 B =12726.549372 C =14298.599680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.138 3.862
3 H 0.085 0.915
4 C 0.111 3.889
5 N -0.659 5.659
6 C 0.341 3.659
7 N -0.610 5.610
8 C 0.332 3.668
9 C -0.106 4.106
10 C -0.144 4.144
11 C -0.147 4.147
12 N -0.530 5.530
13 S 0.208 5.792
14 N -0.713 5.713
15 C 0.542 3.458
16 O -0.554 6.554
17 C -0.115 4.115
18 S -0.172 6.172
19 C -0.530 4.530
20 H 0.061 0.939
21 C 0.044 3.956
22 N -0.918 5.918
23 Si 0.915 3.085
24 H -0.262 1.262
25 H -0.261 1.261
26 H -0.236 1.236
27 H 0.079 0.921
28 H 0.043 0.957
29 H 0.094 0.906
30 H 0.106 0.894
31 H 0.114 0.886
32 H 0.418 0.582
33 H 0.136 0.864
34 H 0.095 0.905
35 H 0.125 0.875
36 H 0.125 0.875
37 H 0.087 0.913
38 H 0.415 0.585
39 H 0.112 0.888
40 H 0.111 0.889
41 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.489 -4.020 -29.533 29.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.033 3.967
3 H 0.103 0.897
4 C -0.012 4.012
5 N -0.297 5.297
6 C -0.038 4.038
7 N -0.347 5.347
8 C 0.044 3.956
9 C -0.129 4.129
10 C -0.182 4.182
11 C -0.186 4.186
12 N -0.364 5.364
13 S 0.341 5.659
14 N -0.368 5.368
15 C 0.327 3.673
16 O -0.432 6.432
17 C -0.266 4.266
18 S 0.054 5.946
19 C -0.677 4.677
20 H 0.079 0.921
21 C -0.162 4.162
22 N -0.556 5.556
23 Si 0.737 3.263
24 H -0.186 1.186
25 H -0.185 1.185
26 H -0.159 1.159
27 H 0.098 0.902
28 H 0.062 0.938
29 H 0.113 0.887
30 H 0.124 0.876
31 H 0.132 0.868
32 H 0.257 0.743
33 H 0.154 0.846
34 H 0.113 0.887
35 H 0.144 0.856
36 H 0.143 0.857
37 H 0.105 0.895
38 H 0.252 0.748
39 H 0.130 0.870
40 H 0.129 0.871
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -2.679 -2.576 -30.294 30.521
hybrid contribution 1.290 -0.851 1.968 2.502
sum -1.389 -3.427 -28.326 28.566
Atomic orbital electron populations
1.22098 0.92305 1.03911 1.03372 1.21211 0.96099 0.97256 0.82109
0.89694 1.22313 0.75919 1.03831 0.99090 1.44103 1.07118 1.58661
1.19840 1.25272 0.90925 0.92781 0.94814 1.67241 1.11778 1.29143
1.26502 1.22466 0.97975 0.90646 0.84525 1.20586 0.86434 1.00792
1.05088 1.23106 1.03722 1.01486 0.89874 1.23105 1.03547 0.90332
1.01622 1.77366 0.97815 1.33112 1.28127 1.84635 1.15732 1.53640
1.11866 1.45881 1.67813 1.14702 1.08412 1.19826 0.76627 0.86494
0.84332 1.90711 1.50332 1.17214 1.84926 1.23293 1.06038 1.02384
0.94857 1.84670 1.86712 1.18237 1.04947 1.22470 1.50181 0.98172
0.96891 0.92089 1.25595 0.93268 1.02335 0.94965 1.70020 1.44436
1.37791 1.03309 0.85853 0.79534 0.80314 0.80578 1.18633 1.18518
1.15935 0.90225 0.93752 0.88699 0.87612 0.86784 0.74338 0.84626
0.88656 0.85644 0.85679 0.89483 0.74770 0.86966 0.87098 0.91389
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.84 9.48 71.98 0.68 -1.16 16
2 C 0.14 1.81 2.73 44.99 0.12 1.94 16
3 H 0.08 1.48 7.58 -2.39 -0.02 1.47 16
4 C 0.11 0.88 5.29 86.38 0.46 1.34 16
5 N -0.66 -9.08 5.53 -348.71 -1.93 -11.00 16
6 C 0.34 6.37 8.57 178.86 1.53 7.90 16
7 N -0.61 -14.48 10.61 -200.02 -2.12 -16.61 16
8 C 0.33 7.55 7.22 139.39 1.01 8.56 16
9 C -0.11 -1.86 6.28 -11.54 -0.07 -1.93 16
10 C -0.14 -1.92 10.05 30.62 0.31 -1.61 16
11 C -0.15 -2.03 10.24 30.62 0.31 -1.71 16
12 N -0.53 -11.95 11.31 -60.44 -0.68 -12.64 16
13 S 0.21 3.54 23.17 -56.49 -1.31 2.24 16
14 N -0.71 -12.61 4.52 -442.54 -2.00 -14.61 16
15 C 0.54 16.05 7.81 87.66 0.68 16.73 16
16 O -0.55 -20.97 15.52 -3.04 -0.05 -21.02 16
17 C -0.11 -4.00 6.16 71.24 0.44 -3.57 16
18 S -0.17 -8.38 18.55 -56.49 -1.05 -9.43 16
19 C -0.53 -30.34 10.04 67.95 0.68 -29.66 16
20 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16
21 C 0.04 2.54 5.50 84.86 0.47 3.01 16
22 N -0.92 -55.58 13.97 21.65 0.30 -55.27 16
23 Si 0.92 44.43 27.74 68.60 1.90 46.34 16
24 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16
25 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16
26 H -0.24 -11.35 6.74 99.48 0.67 -10.68 16
27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
28 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16
29 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16
30 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16
31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16
32 H 0.42 6.66 8.26 -92.71 -0.77 5.90 16
33 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16
34 H 0.09 1.51 7.65 -2.39 -0.02 1.49 16
35 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16
36 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16
37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
38 H 0.42 5.31 8.60 -92.71 -0.80 4.52 16
39 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16
40 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16
41 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16
Total: -1.00 -77.13 379.23 -0.83 -77.96
By element:
Atomic # 1 Polarization: 14.73 SS G_CDS: -0.52 Total: 14.20 kcal
Atomic # 6 Polarization: -6.79 SS G_CDS: 6.62 Total: -0.16 kcal
Atomic # 7 Polarization: -103.70 SS G_CDS: -6.43 Total: -110.13 kcal
Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.34 kcal
Atomic # 16 Polarization: -4.84 SS G_CDS: -2.36 Total: -7.19 kcal
Total: -77.13 -0.83 -77.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001107627639.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.580 kcal
(2) G-P(sol) polarization free energy of solvation -77.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.452 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds