Wall clock time and date at job start Sat Apr 11 2020 06:32:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81004 * 1
3 3 C 1.76193 * 100.00155 * 2 1
4 4 C 1.39751 * 120.49562 * 179.97438 * 3 2 1
5 5 C 1.38051 * 118.48720 * 180.02562 * 4 3 2
6 6 N 1.32546 * 119.29911 * 0.02562 * 5 4 3
7 7 C 1.32475 * 120.94899 * 359.97438 * 6 5 4
8 8 N 1.38403 * 119.17508 * 180.02562 * 7 6 5
9 9 C 1.46495 * 120.00165 * 0.02562 * 8 7 6
10 10 C 1.52995 * 109.47115 * 180.02562 * 9 8 7
11 11 H 1.09007 * 109.47080 * 294.99685 * 10 9 8
12 12 C 1.53000 * 109.47023 * 175.00361 * 10 9 8
13 13 N 1.46499 * 109.47455 * 55.00282 * 10 9 8
14 14 C 1.34777 * 120.00199 * 205.00257 * 13 10 9
15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 10
16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 10
17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13
18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14
19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16
20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16
21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47506 * 89.99666 * 22 20 18
24 24 H 1.48498 * 109.47217 * 210.00061 * 22 20 18
25 25 H 1.48502 * 109.46767 * 329.99807 * 22 20 18
26 26 N 1.32451 * 121.65076 * 0.28393 * 7 6 5
27 27 H 1.08994 * 109.47177 * 60.00137 * 1 2 3
28 28 H 1.09000 * 109.46760 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.46781 * 299.99678 * 1 2 3
30 30 H 1.07996 * 120.75731 * 359.97438 * 4 3 2
31 31 H 1.07997 * 120.34836 * 180.02562 * 5 4 3
32 32 H 0.97004 * 119.99357 * 180.02562 * 8 7 6
33 33 H 1.08999 * 109.47015 * 59.99923 * 9 8 7
34 34 H 1.09000 * 109.47061 * 300.00610 * 9 8 7
35 35 H 1.08998 * 109.47598 * 59.99967 * 12 10 9
36 36 H 1.09005 * 109.47473 * 179.97438 * 12 10 9
37 37 H 1.08998 * 109.46925 * 299.99562 * 12 10 9
38 38 H 0.97000 * 119.99484 * 24.99354 * 13 10 9
39 39 H 1.09004 * 109.46965 * 299.72211 * 16 14 13
40 40 H 1.08994 * 109.46990 * 59.72065 * 16 14 13
41 41 H 0.97002 * 120.00288 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8100 0.0000 0.0000
3 6 2.1160 1.7352 0.0000
4 6 3.4251 2.2244 0.0005
5 6 3.6171 3.5915 0.0011
6 7 2.5626 4.3946 0.0016
7 6 1.3322 3.9035 0.0010
8 7 0.2576 4.7758 0.0010
9 6 0.4884 6.2224 0.0010
10 6 -0.8557 6.9533 0.0017
11 1 -1.3827 6.7454 -0.9296
12 6 -0.6171 8.4593 0.1273
13 7 -1.6626 6.4906 1.1334
14 6 -3.0067 6.5769 1.0827
15 8 -3.5481 7.0380 0.1002
16 6 -3.8365 6.1066 2.2495
17 16 -5.5908 6.3595 1.8829
18 6 -6.3062 5.7415 3.3698
19 1 -5.6719 5.3620 4.1572
20 6 -7.6849 5.7434 3.5297
21 7 -8.4581 6.2073 2.5706
22 14 -8.4434 5.0889 5.1063
23 1 -8.5773 6.1953 6.0878
24 1 -9.7845 4.5228 4.8127
25 1 -7.5714 4.0283 5.6720
26 7 1.1047 2.5987 0.0056
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 4.2674 1.5485 0.0014
31 1 4.6159 4.0023 0.0011
32 1 -0.6483 4.4291 0.0010
33 1 1.0531 6.5002 -0.8889
34 1 1.0532 6.5002 0.8910
35 1 -0.0168 8.8037 -0.7147
36 1 -1.5747 8.9802 0.1273
37 1 -0.0901 8.6673 1.0585
38 1 -1.2296 6.1220 1.9193
39 1 -3.6508 5.0467 2.4237
40 1 -3.5659 6.6740 3.1399
41 1 -9.4217 6.2084 2.6821
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001108254489.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:37
Heat of formation + Delta-G solvation = -8.611542 kcal
Electronic energy + Delta-G solvation = -23948.356822 eV
Core-core repulsion = 20308.008870 eV
Total energy + Delta-G solvation = -3640.347952 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.093 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.80135 -40.83404 -38.05683 -35.60452 -34.68445 -34.59988 -32.94760 -31.43685
-30.03541 -29.85916 -27.67452 -27.20633 -25.69511 -23.97344 -22.82927 -21.62434
-19.91892 -19.52034 -18.90386 -17.97083 -17.45725 -17.06973 -16.89346 -16.51019
-16.44906 -16.39705 -15.98095 -15.82595 -15.16476 -14.85684 -14.76574 -14.65321
-14.53337 -14.08840 -14.03935 -13.82984 -13.33149 -13.28818 -13.18070 -12.94608
-12.90043 -12.60679 -12.19093 -12.08361 -12.02871 -11.76138 -11.73529 -11.59488
-11.15898 -10.95497 -10.29535 -10.22110 -10.16599 -9.36243 -8.72879 -8.67797
-8.36376 -6.14104 -0.02390 0.25060 0.40231 1.07793 1.25055 1.40827
1.45086 1.55539 1.58300 1.87020 2.23396 2.27487 2.83239 2.97794
3.28203 3.30516 3.61059 3.75049 3.95094 4.01940 4.09081 4.24047
4.26072 4.29454 4.30951 4.38391 4.48555 4.59873 4.62309 4.71581
4.75113 4.91466 4.99673 5.19359 5.30072 5.40135 5.45207 5.67071
6.05734 6.18081 6.31547 6.43869 7.05125 7.20532 7.25480 8.72748
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.011011 B = 0.002420 C = 0.002060
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2542.195699 B =11568.333504 C =13586.204574
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 S -0.040 6.040
3 C 0.178 3.822
4 C -0.270 4.270
5 C 0.202 3.798
6 N -0.585 5.585
7 C 0.564 3.436
8 N -0.699 5.699
9 C 0.147 3.853
10 C 0.135 3.865
11 H 0.075 0.925
12 C -0.155 4.155
13 N -0.711 5.711
14 C 0.539 3.461
15 O -0.559 6.559
16 C -0.131 4.131
17 S -0.147 6.147
18 C -0.547 4.547
19 H 0.081 0.919
20 C 0.014 3.986
21 N -0.911 5.911
22 Si 0.998 3.002
23 H -0.268 1.268
24 H -0.277 1.277
25 H -0.259 1.259
26 N -0.597 5.597
27 H 0.081 0.919
28 H 0.123 0.877
29 H 0.081 0.919
30 H 0.171 0.829
31 H 0.209 0.791
32 H 0.412 0.588
33 H 0.091 0.909
34 H 0.086 0.914
35 H 0.090 0.910
36 H 0.041 0.959
37 H 0.076 0.924
38 H 0.413 0.587
39 H 0.106 0.894
40 H 0.107 0.893
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 29.253 -8.253 -3.581 30.605
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.303 4.303
2 S 0.197 5.803
3 C -0.080 4.080
4 C -0.302 4.302
5 C 0.035 3.965
6 N -0.310 5.310
7 C 0.203 3.797
8 N -0.336 5.336
9 C 0.022 3.978
10 C 0.030 3.970
11 H 0.093 0.907
12 C -0.213 4.213
13 N -0.365 5.365
14 C 0.325 3.675
15 O -0.437 6.437
16 C -0.282 4.282
17 S 0.080 5.920
18 C -0.694 4.694
19 H 0.099 0.901
20 C -0.191 4.191
21 N -0.547 5.547
22 Si 0.819 3.181
23 H -0.193 1.193
24 H -0.203 1.203
25 H -0.183 1.183
26 N -0.325 5.325
27 H 0.100 0.900
28 H 0.141 0.859
29 H 0.100 0.900
30 H 0.188 0.812
31 H 0.226 0.774
32 H 0.249 0.751
33 H 0.109 0.891
34 H 0.104 0.896
35 H 0.109 0.891
36 H 0.060 0.940
37 H 0.095 0.905
38 H 0.249 0.751
39 H 0.124 0.876
40 H 0.126 0.874
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 28.149 -7.635 -5.281 29.640
hybrid contribution -0.820 -0.552 2.063 2.288
sum 27.329 -8.187 -3.217 28.710
Atomic orbital electron populations
1.23484 0.93045 1.07355 1.06407 1.85659 1.08867 0.95941 1.89817
1.23671 0.92279 0.99243 0.92767 1.22423 0.96839 0.98601 1.12341
1.23498 0.98290 0.89101 0.85574 1.68051 0.98179 1.40787 1.24023
1.19422 0.87094 0.85063 0.88091 1.44199 1.05464 1.04873 1.79025
1.21591 0.94937 0.76871 1.04357 1.21255 0.90484 0.95348 0.89934
0.90690 1.22052 1.02089 0.93024 1.04172 1.45875 1.04573 1.64929
1.21145 1.19974 0.82984 0.77257 0.87330 1.90702 1.72569 1.45709
1.34685 1.23380 0.99010 1.05501 1.00353 1.85539 0.96464 1.83321
1.26652 1.23193 0.95039 1.48028 1.03185 0.90090 1.26115 0.96600
0.95047 1.01362 1.70178 1.05253 1.44697 1.34596 0.84968 0.77480
0.78690 0.76941 1.19293 1.20253 1.18283 1.68163 1.35440 1.02735
1.26200 0.89993 0.85866 0.90007 0.81189 0.77441 0.75109 0.89062
0.89587 0.89145 0.94026 0.90476 0.75059 0.87577 0.87428 0.91975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.07 9.68 113.37 1.10 -0.97 16
2 S -0.04 -0.64 22.74 -56.49 -1.28 -1.93 16
3 C 0.18 3.47 7.01 84.88 0.59 4.06 16
4 C -0.27 -3.88 9.94 22.59 0.22 -3.66 16
5 C 0.20 2.73 11.28 84.54 0.95 3.69 16
6 N -0.58 -11.17 9.58 -198.29 -1.90 -13.07 16
7 C 0.56 12.42 8.43 261.52 2.20 14.62 16
8 N -0.70 -13.84 5.54 -351.11 -1.94 -15.79 16
9 C 0.15 2.32 5.20 86.38 0.45 2.77 16
10 C 0.13 2.69 2.73 44.99 0.12 2.81 16
11 H 0.07 1.87 7.58 -2.38 -0.02 1.85 16
12 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16
13 N -0.71 -16.65 4.52 -442.53 -2.00 -18.65 16
14 C 0.54 18.97 7.81 87.66 0.68 19.66 16
15 O -0.56 -24.81 15.53 -3.04 -0.05 -24.86 16
16 C -0.13 -5.11 6.16 71.24 0.44 -4.68 16
17 S -0.15 -8.09 20.57 -56.49 -1.16 -9.26 16
18 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16
19 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16
20 C 0.01 0.77 5.49 84.86 0.47 1.24 16
21 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16
22 Si 1.00 43.61 29.55 68.60 2.03 45.64 16
23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
25 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16
26 N -0.60 -13.71 9.32 -194.13 -1.81 -15.52 16
27 H 0.08 1.43 8.14 -2.40 -0.02 1.41 16
28 H 0.12 1.34 8.14 -2.40 -0.02 1.32 16
29 H 0.08 1.44 8.13 -2.40 -0.02 1.42 16
30 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16
31 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16
32 H 0.41 8.96 8.25 -92.71 -0.77 8.19 16
33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16
37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
38 H 0.41 7.61 8.60 -92.71 -0.80 6.81 16
39 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16
40 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16
41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16
Total: -1.00 -78.18 382.67 0.24 -77.94
By element:
Atomic # 1 Polarization: 24.70 SS G_CDS: -0.49 Total: 24.20 kcal
Atomic # 6 Polarization: -1.66 SS G_CDS: 8.56 Total: 6.91 kcal
Atomic # 7 Polarization: -111.29 SS G_CDS: -7.37 Total: -118.65 kcal
Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Atomic # 16 Polarization: -8.73 SS G_CDS: -2.45 Total: -11.18 kcal
Total: -78.18 0.24 -77.94 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108254489.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.330 kcal
(2) G-P(sol) polarization free energy of solvation -78.178 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds