Wall clock time and date at job start Sat Apr 11 2020 06:29:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.35370 * 116.99732 * 2 1
4 4 C 1.36096 * 125.57182 * 180.02562 * 3 2 1
5 5 C 1.39905 * 107.17128 * 179.97438 * 4 3 2
6 6 C 1.37823 * 106.68177 * 359.97438 * 5 4 3
7 7 C 1.46127 * 126.03359 * 179.97438 * 6 5 4
8 8 O 1.21767 * 120.00523 * 0.02562 * 7 6 5
9 9 N 1.34780 * 120.00320 * 180.02562 * 7 6 5
10 10 C 1.46491 * 120.00508 * 180.02562 * 9 7 6
11 11 C 1.53002 * 109.47485 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47070 * 295.00165 * 11 10 9
13 13 C 1.53000 * 109.47233 * 174.99791 * 11 10 9
14 14 N 1.46499 * 109.46799 * 55.00265 * 11 10 9
15 15 C 1.34781 * 119.99874 * 205.00309 * 14 11 10
16 16 O 1.21278 * 120.00033 * 359.97438 * 15 14 11
17 17 C 1.50703 * 120.00101 * 179.97438 * 15 14 11
18 18 S 1.80993 * 109.47222 * 179.97438 * 17 15 14
19 19 C 1.76199 * 100.00057 * 179.97438 * 18 17 15
20 20 H 1.07997 * 119.99970 * 0.02562 * 19 18 17
21 21 C 1.38800 * 120.00000 * 180.02562 * 19 18 17
22 22 N 1.31630 * 120.00120 * 180.02562 * 21 19 18
23 23 Si 1.86804 * 120.00128 * 0.02562 * 21 19 18
24 24 H 1.48498 * 109.47227 * 89.99678 * 23 21 19
25 25 H 1.48500 * 109.47232 * 209.99990 * 23 21 19
26 26 H 1.48504 * 109.47094 * 329.99949 * 23 21 19
27 27 O 1.34003 * 125.58276 * 0.26133 * 3 2 1
28 28 H 1.08996 * 109.47069 * 60.00167 * 1 2 3
29 29 H 1.08997 * 109.46842 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47071 * 300.00192 * 1 2 3
31 31 H 1.08002 * 126.41418 * 359.97146 * 4 3 2
32 32 H 1.08005 * 126.65726 * 179.97438 * 5 4 3
33 33 H 0.97008 * 119.99717 * 0.02562 * 9 7 6
34 34 H 1.09002 * 109.47215 * 60.00091 * 10 9 7
35 35 H 1.09000 * 109.47131 * 300.00146 * 10 9 7
36 36 H 1.09004 * 109.46724 * 60.00652 * 13 11 10
37 37 H 1.09001 * 109.47194 * 179.97438 * 13 11 10
38 38 H 1.08992 * 109.47399 * 300.00166 * 13 11 10
39 39 H 0.97002 * 120.00410 * 24.99527 * 14 11 10
40 40 H 1.09002 * 109.46880 * 299.99754 * 17 15 14
41 41 H 1.09003 * 109.46851 * 59.99965 * 17 15 14
42 42 H 0.97002 * 119.99979 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0436 1.2062 0.0000
4 6 3.3893 1.4091 -0.0005
5 6 3.5985 2.7924 -0.0009
6 6 2.3522 3.3810 -0.0012
7 6 2.0795 4.8166 -0.0012
8 8 3.0018 5.6116 -0.0013
9 7 0.8071 5.2609 -0.0010
10 6 0.5337 6.7000 -0.0015
11 6 -0.9787 6.9320 -0.0018
12 1 -1.4035 6.5574 -0.9331
13 6 -1.2650 8.4297 0.1235
14 7 -1.5815 6.2233 1.1298
15 6 -2.8752 5.8487 1.0784
16 8 -3.5403 6.0987 0.0956
17 6 -3.4953 5.1192 2.2423
18 16 -5.2296 4.7571 1.8725
19 6 -5.6920 3.9270 3.3564
20 1 -4.9670 3.7853 4.1442
21 6 -6.9879 3.4552 3.5128
22 7 -7.3335 2.8355 4.6215
23 14 -8.2418 3.6997 2.1498
24 1 -8.1969 2.5409 1.2222
25 1 -9.6000 3.8088 2.7403
26 1 -7.9252 4.9438 1.4033
27 8 1.4265 2.3957 0.0050
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8899
31 1 4.1529 0.6453 -0.0005
32 1 4.5516 3.3005 -0.0009
33 1 0.0722 4.6276 -0.0005
34 1 0.9704 7.1526 -0.8918
35 1 0.9709 7.1533 0.8882
36 1 -0.8165 8.9570 -0.7185
37 1 -2.3424 8.5949 0.1228
38 1 -0.8403 8.8042 1.0547
39 1 -1.0497 6.0235 1.9160
40 1 -2.9578 4.1867 2.4145
41 1 -3.4368 5.7425 3.1346
42 1 -8.2391 2.5055 4.7306
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001533997639.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:41
Heat of formation + Delta-G solvation = -98.479442 kcal
Electronic energy + Delta-G solvation = -26812.262212 eV
Core-core repulsion = 22692.971674 eV
Total energy + Delta-G solvation = -4119.290539 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 5.78 seconds
Orbital eigenvalues (eV)
-43.10307 -40.15015 -39.37294 -38.80163 -36.54089 -34.12020 -33.47294 -32.50330
-31.70696 -30.06156 -28.80793 -27.85264 -26.37813 -25.67797 -23.08016 -22.35621
-21.92185 -20.67040 -20.53699 -19.30002 -18.28560 -17.80441 -17.44269 -16.77614
-16.67193 -16.07160 -15.70662 -15.58515 -15.12898 -15.03485 -14.92812 -14.61007
-14.11985 -13.62770 -13.55983 -13.46135 -13.30747 -13.18787 -13.03267 -12.87054
-12.85305 -12.50635 -12.22278 -12.04015 -11.91436 -11.33711 -11.28761 -11.06896
-10.67495 -10.64581 -10.40348 -9.92318 -9.67744 -9.52350 -9.19362 -9.06114
-8.57909 -8.44907 -6.99404 -6.35094 -4.07589 0.69065 1.83612 1.99637
2.59474 2.68384 2.82851 2.85669 2.92788 3.22558 3.27568 3.44592
3.56832 4.26470 4.27393 4.40013 4.50709 4.65666 4.71606 4.79296
4.79494 4.96800 4.99522 5.03987 5.15643 5.21792 5.23767 5.26679
5.35396 5.46924 5.49157 5.66373 5.78702 5.87152 5.91407 5.92710
6.04197 6.14692 6.40530 6.71412 7.07486 7.45886 7.72073 7.87845
8.35046 8.35789 9.10877 10.74109
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.009762 B = 0.002965 C = 0.002382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2867.584831 B = 9440.102835 C =11753.243515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.262 6.262
3 C 0.224 3.776
4 C -0.246 4.246
5 C -0.077 4.077
6 C -0.110 4.110
7 C 0.611 3.389
8 O -0.524 6.524
9 N -0.721 5.721
10 C 0.112 3.888
11 C 0.132 3.868
12 H 0.096 0.904
13 C -0.161 4.161
14 N -0.736 5.736
15 C 0.532 3.468
16 O -0.516 6.516
17 C -0.125 4.125
18 S -0.140 6.140
19 C -0.523 4.523
20 H 0.088 0.912
21 C 0.096 3.904
22 N -0.880 5.880
23 Si 0.857 3.143
24 H -0.267 1.267
25 H -0.274 1.274
26 H -0.235 1.235
27 O -0.188 6.188
28 H 0.066 0.934
29 H 0.114 0.886
30 H 0.069 0.931
31 H 0.164 0.836
32 H 0.168 0.832
33 H 0.409 0.591
34 H 0.087 0.913
35 H 0.079 0.921
36 H 0.067 0.933
37 H 0.071 0.929
38 H 0.061 0.939
39 H 0.400 0.600
40 H 0.096 0.904
41 H 0.098 0.902
42 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.994 0.765 -9.712 23.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 O -0.175 6.175
3 C 0.126 3.874
4 C -0.266 4.266
5 C -0.097 4.097
6 C -0.160 4.160
7 C 0.398 3.602
8 O -0.402 6.402
9 N -0.373 5.373
10 C -0.011 4.011
11 C 0.026 3.974
12 H 0.114 0.886
13 C -0.220 4.220
14 N -0.391 5.391
15 C 0.318 3.682
16 O -0.390 6.390
17 C -0.276 4.276
18 S 0.086 5.914
19 C -0.670 4.670
20 H 0.106 0.894
21 C -0.113 4.113
22 N -0.516 5.516
23 Si 0.681 3.319
24 H -0.192 1.192
25 H -0.199 1.199
26 H -0.159 1.159
27 O -0.088 6.088
28 H 0.085 0.915
29 H 0.132 0.868
30 H 0.087 0.913
31 H 0.182 0.818
32 H 0.185 0.815
33 H 0.244 0.756
34 H 0.105 0.895
35 H 0.097 0.903
36 H 0.086 0.914
37 H 0.090 0.910
38 H 0.080 0.920
39 H 0.235 0.765
40 H 0.114 0.886
41 H 0.116 0.884
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 20.129 1.555 -11.250 23.112
hybrid contribution -0.262 -0.894 1.253 1.562
sum 19.867 0.661 -9.997 22.250
Atomic orbital electron populations
1.23269 0.75786 1.05509 1.03201 1.86421 1.23738 1.18572 1.88795
1.20882 0.89579 0.78269 0.98619 1.20794 0.92122 0.96933 1.16722
1.21986 0.97741 0.92568 0.97413 1.21810 0.87115 0.87288 1.19792
1.16293 0.83241 0.84025 0.76643 1.90910 1.44245 1.53786 1.51268
1.45884 1.07596 1.08836 1.74955 1.21794 0.94863 0.80597 1.03880
1.21168 0.90898 0.93677 0.91626 0.88594 1.22113 1.03521 0.93988
1.02370 1.46129 1.12050 1.60689 1.20274 1.20311 0.81098 0.78224
0.88542 1.90709 1.60855 1.54152 1.33243 1.23291 1.02390 1.02781
0.99135 1.84791 1.03357 1.75713 1.27528 1.22307 1.00840 1.42061
1.01824 0.89409 1.24715 0.97525 0.93373 0.95662 1.69936 1.19934
1.36438 1.25286 0.86740 0.81199 0.81401 0.82529 1.19224 1.19900
1.15918 1.83978 1.37648 1.14329 1.72876 0.91523 0.86792 0.91252
0.81796 0.81474 0.75584 0.89487 0.90256 0.91361 0.91027 0.92021
0.76526 0.88609 0.88398 0.91888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.12 10.74 101.05 1.09 1.20 16
2 O -0.26 -2.44 10.55 -41.03 -0.43 -2.87 16
3 C 0.22 2.25 7.86 29.96 0.24 2.49 16
4 C -0.25 -2.20 10.89 -39.73 -0.43 -2.64 16
5 C -0.08 -0.72 10.66 -39.11 -0.42 -1.14 16
6 C -0.11 -1.18 7.15 -36.57 -0.26 -1.44 16
7 C 0.61 6.84 7.77 -13.09 -0.10 6.74 16
8 O -0.52 -7.09 16.87 5.13 0.09 -7.00 16
9 N -0.72 -6.74 5.38 -61.79 -0.33 -7.08 16
10 C 0.11 0.93 5.23 -4.05 -0.02 0.90 16
11 C 0.13 1.24 2.73 -67.93 -0.19 1.06 16
12 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16
13 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16
14 N -0.74 -8.04 4.52 -53.80 -0.24 -8.29 16
15 C 0.53 8.46 7.81 -10.98 -0.09 8.37 16
16 O -0.52 -10.10 15.52 5.56 0.09 -10.01 16
17 C -0.13 -2.25 6.16 36.01 0.22 -2.03 16
18 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16
19 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16
20 H 0.09 2.57 8.03 -52.49 -0.42 2.14 16
21 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16
22 N -0.88 -26.01 13.97 55.49 0.78 -25.24 16
23 Si 0.86 21.22 27.74 -169.99 -4.72 16.51 16
24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
26 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16
27 O -0.19 -1.99 9.88 -19.25 -0.19 -2.18 16
28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16
32 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16
33 H 0.41 3.76 7.89 -40.82 -0.32 3.44 16
34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
39 H 0.40 3.56 8.60 -40.82 -0.35 3.21 16
40 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16
41 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16
42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
LS Contribution 383.90 15.07 5.79 5.79
Total: -1.00 -34.58 383.90 -6.29 -40.87
By element:
Atomic # 1 Polarization: 9.82 SS G_CDS: -5.72 Total: 4.10 kcal
Atomic # 6 Polarization: 0.19 SS G_CDS: 0.60 Total: 0.79 kcal
Atomic # 7 Polarization: -40.80 SS G_CDS: 0.20 Total: -40.60 kcal
Atomic # 8 Polarization: -21.62 SS G_CDS: -0.45 Total: -22.07 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -4.72 Total: 16.51 kcal
Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -34.58 -6.29 -40.87 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001533997639.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.612 kcal
(2) G-P(sol) polarization free energy of solvation -34.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 5.78 seconds