Wall clock time and date at job start Sat Apr 11 2020 06:29:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.35370 * 116.99732 * 2 1
4 4 C 1.36096 * 125.57182 * 180.02562 * 3 2 1
5 5 C 1.39905 * 107.17128 * 179.97438 * 4 3 2
6 6 C 1.37823 * 106.68177 * 359.97438 * 5 4 3
7 7 C 1.46127 * 126.03359 * 179.97438 * 6 5 4
8 8 O 1.21767 * 120.00523 * 0.02562 * 7 6 5
9 9 N 1.34780 * 120.00320 * 180.02562 * 7 6 5
10 10 C 1.46491 * 120.00508 * 180.02562 * 9 7 6
11 11 C 1.53002 * 109.47485 * 179.97438 * 10 9 7
12 12 H 1.09002 * 109.47070 * 295.00165 * 11 10 9
13 13 C 1.53000 * 109.47233 * 174.99791 * 11 10 9
14 14 N 1.46499 * 109.46799 * 55.00265 * 11 10 9
15 15 C 1.34781 * 119.99874 * 205.00309 * 14 11 10
16 16 O 1.21278 * 120.00033 * 359.97438 * 15 14 11
17 17 C 1.50703 * 120.00101 * 179.97438 * 15 14 11
18 18 S 1.80993 * 109.47222 * 179.97438 * 17 15 14
19 19 C 1.76199 * 100.00057 * 179.97438 * 18 17 15
20 20 H 1.07997 * 119.99970 * 0.02562 * 19 18 17
21 21 C 1.38800 * 120.00000 * 180.02562 * 19 18 17
22 22 N 1.31630 * 120.00120 * 180.02562 * 21 19 18
23 23 Si 1.86804 * 120.00128 * 0.02562 * 21 19 18
24 24 H 1.48498 * 109.47227 * 89.99678 * 23 21 19
25 25 H 1.48500 * 109.47232 * 209.99990 * 23 21 19
26 26 H 1.48504 * 109.47094 * 329.99949 * 23 21 19
27 27 O 1.34003 * 125.58276 * 0.26133 * 3 2 1
28 28 H 1.08996 * 109.47069 * 60.00167 * 1 2 3
29 29 H 1.08997 * 109.46842 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47071 * 300.00192 * 1 2 3
31 31 H 1.08002 * 126.41418 * 359.97146 * 4 3 2
32 32 H 1.08005 * 126.65726 * 179.97438 * 5 4 3
33 33 H 0.97008 * 119.99717 * 0.02562 * 9 7 6
34 34 H 1.09002 * 109.47215 * 60.00091 * 10 9 7
35 35 H 1.09000 * 109.47131 * 300.00146 * 10 9 7
36 36 H 1.09004 * 109.46724 * 60.00652 * 13 11 10
37 37 H 1.09001 * 109.47194 * 179.97438 * 13 11 10
38 38 H 1.08992 * 109.47399 * 300.00166 * 13 11 10
39 39 H 0.97002 * 120.00410 * 24.99527 * 14 11 10
40 40 H 1.09002 * 109.46880 * 299.99754 * 17 15 14
41 41 H 1.09003 * 109.46851 * 59.99965 * 17 15 14
42 42 H 0.97002 * 119.99979 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0436 1.2062 0.0000
4 6 3.3893 1.4091 -0.0005
5 6 3.5985 2.7924 -0.0009
6 6 2.3522 3.3810 -0.0012
7 6 2.0795 4.8166 -0.0012
8 8 3.0018 5.6116 -0.0013
9 7 0.8071 5.2609 -0.0010
10 6 0.5337 6.7000 -0.0015
11 6 -0.9787 6.9320 -0.0018
12 1 -1.4035 6.5574 -0.9331
13 6 -1.2650 8.4297 0.1235
14 7 -1.5815 6.2233 1.1298
15 6 -2.8752 5.8487 1.0784
16 8 -3.5403 6.0987 0.0956
17 6 -3.4953 5.1192 2.2423
18 16 -5.2296 4.7571 1.8725
19 6 -5.6920 3.9270 3.3564
20 1 -4.9670 3.7853 4.1442
21 6 -6.9879 3.4552 3.5128
22 7 -7.3335 2.8355 4.6215
23 14 -8.2418 3.6997 2.1498
24 1 -8.1969 2.5409 1.2222
25 1 -9.6000 3.8088 2.7403
26 1 -7.9252 4.9438 1.4033
27 8 1.4265 2.3957 0.0050
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5138 0.8899
31 1 4.1529 0.6453 -0.0005
32 1 4.5516 3.3005 -0.0009
33 1 0.0722 4.6276 -0.0005
34 1 0.9704 7.1526 -0.8918
35 1 0.9709 7.1533 0.8882
36 1 -0.8165 8.9570 -0.7185
37 1 -2.3424 8.5949 0.1228
38 1 -0.8403 8.8042 1.0547
39 1 -1.0497 6.0235 1.9160
40 1 -2.9578 4.1867 2.4145
41 1 -3.4368 5.7425 3.1346
42 1 -8.2391 2.5055 4.7306
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001533997639.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:36
Heat of formation + Delta-G solvation = -123.806746 kcal
Electronic energy + Delta-G solvation = -26813.360487 eV
Core-core repulsion = 22692.971674 eV
Total energy + Delta-G solvation = -4120.388813 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.84494 -41.13344 -40.42204 -39.51869 -37.53520 -35.03340 -34.67696 -34.24003
-32.78342 -30.83595 -30.07084 -28.50811 -27.85629 -27.08890 -23.86270 -23.10761
-22.83510 -21.67443 -21.43417 -20.10809 -19.86620 -18.89934 -18.19257 -18.01737
-17.60588 -17.14975 -16.99197 -16.46755 -16.45477 -16.30277 -15.92115 -15.61060
-15.42947 -14.99309 -14.75463 -14.32018 -14.30221 -14.09606 -13.99758 -13.97346
-13.66547 -13.35403 -13.33017 -13.07502 -13.01175 -13.00580 -12.60757 -12.56216
-12.07672 -11.87265 -11.53449 -11.17697 -11.12851 -11.01990 -10.53996 -10.35105
-10.23776 -9.19036 -8.99659 -8.52162 -6.22781 -0.09414 0.98354 1.10330
1.27096 1.30676 1.46120 1.53978 1.54841 1.89609 2.03792 2.15779
2.23542 2.26992 2.70779 2.86340 3.50122 3.69420 3.75826 3.85560
4.03284 4.16311 4.19713 4.21494 4.26814 4.30320 4.46224 4.52195
4.56391 4.66198 4.67775 4.74338 4.82607 4.98353 5.11442 5.23661
5.30047 5.40753 5.42985 5.69937 6.00668 6.10997 6.27600 6.40402
6.90003 6.93141 7.15485 8.60257
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.009762 B = 0.002965 C = 0.002382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2867.584831 B = 9440.102835 C =11753.243515
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.011 3.989
2 O -0.267 6.267
3 C 0.211 3.789
4 C -0.243 4.243
5 C -0.073 4.073
6 C -0.131 4.131
7 C 0.612 3.388
8 O -0.551 6.551
9 N -0.715 5.715
10 C 0.119 3.881
11 C 0.137 3.863
12 H 0.083 0.917
13 C -0.157 4.157
14 N -0.712 5.712
15 C 0.540 3.460
16 O -0.555 6.555
17 C -0.114 4.114
18 S -0.171 6.171
19 C -0.529 4.529
20 H 0.061 0.939
21 C 0.046 3.954
22 N -0.918 5.918
23 Si 0.914 3.086
24 H -0.261 1.261
25 H -0.262 1.262
26 H -0.236 1.236
27 O -0.195 6.195
28 H 0.067 0.933
29 H 0.136 0.864
30 H 0.063 0.937
31 H 0.186 0.814
32 H 0.182 0.818
33 H 0.410 0.590
34 H 0.098 0.902
35 H 0.090 0.910
36 H 0.089 0.911
37 H 0.044 0.956
38 H 0.074 0.926
39 H 0.414 0.586
40 H 0.113 0.887
41 H 0.111 0.889
42 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.336 1.193 -10.605 24.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 O -0.181 6.181
3 C 0.114 3.886
4 C -0.263 4.263
5 C -0.093 4.093
6 C -0.181 4.181
7 C 0.400 3.600
8 O -0.431 6.431
9 N -0.366 5.366
10 C -0.004 4.004
11 C 0.032 3.968
12 H 0.101 0.899
13 C -0.216 4.216
14 N -0.367 5.367
15 C 0.326 3.674
16 O -0.432 6.432
17 C -0.265 4.265
18 S 0.056 5.944
19 C -0.677 4.677
20 H 0.079 0.921
21 C -0.160 4.160
22 N -0.556 5.556
23 Si 0.736 3.264
24 H -0.186 1.186
25 H -0.186 1.186
26 H -0.160 1.160
27 O -0.096 6.096
28 H 0.086 0.914
29 H 0.154 0.846
30 H 0.082 0.918
31 H 0.203 0.797
32 H 0.200 0.800
33 H 0.245 0.755
34 H 0.116 0.884
35 H 0.109 0.891
36 H 0.108 0.892
37 H 0.063 0.937
38 H 0.093 0.907
39 H 0.251 0.749
40 H 0.131 0.869
41 H 0.129 0.871
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 21.499 1.989 -12.124 24.762
hybrid contribution -0.518 -1.038 1.562 1.945
sum 20.981 0.951 -10.562 23.509
Atomic orbital electron populations
1.23446 0.74875 1.06940 1.02968 1.86419 1.24703 1.18261 1.88721
1.21210 0.90166 0.78341 0.98893 1.21128 0.92228 0.97259 1.15686
1.22276 0.97982 0.92863 0.96182 1.21860 0.87689 0.87290 1.21295
1.16323 0.83299 0.84076 0.76267 1.90890 1.44960 1.54450 1.52847
1.45874 1.07143 1.09366 1.74206 1.21814 0.93563 0.80049 1.04977
1.21240 0.91435 0.93954 0.90177 0.89853 1.22075 1.01976 0.93400
1.04139 1.45897 1.10316 1.59223 1.21235 1.19870 0.82316 0.78038
0.87183 1.90705 1.62164 1.55984 1.34377 1.23288 0.98177 1.04321
1.00698 1.84686 1.08781 1.75279 1.25669 1.22468 1.00515 1.42060
1.02638 0.92079 1.25564 0.99454 0.93189 0.97754 1.70019 1.20807
1.37665 1.27089 0.85873 0.79272 0.81368 0.79900 1.18572 1.18591
1.15968 1.83948 1.37896 1.14553 1.73167 0.91399 0.84618 0.91815
0.79654 0.80045 0.75455 0.88400 0.89146 0.89218 0.93650 0.90653
0.74895 0.86929 0.87084 0.91390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.15 10.74 113.37 1.22 1.37 16
2 O -0.27 -4.72 10.55 -64.40 -0.68 -5.40 16
3 C 0.21 4.04 7.86 67.32 0.53 4.57 16
4 C -0.24 -3.98 10.89 22.18 0.24 -3.74 16
5 C -0.07 -1.27 10.66 22.58 0.24 -1.03 16
6 C -0.13 -2.68 7.15 24.22 0.17 -2.51 16
7 C 0.61 12.93 7.77 86.29 0.67 13.60 16
8 O -0.55 -14.17 16.87 -4.56 -0.08 -14.25 16
9 N -0.72 -12.16 5.38 -467.59 -2.52 -14.68 16
10 C 0.12 1.67 5.23 86.38 0.45 2.12 16
11 C 0.14 2.30 2.73 44.99 0.12 2.42 16
12 H 0.08 1.71 7.58 -2.39 -0.02 1.69 16
13 C -0.16 -2.44 9.48 71.98 0.68 -1.76 16
14 N -0.71 -14.11 4.52 -442.52 -2.00 -16.11 16
15 C 0.54 16.45 7.81 87.66 0.68 17.13 16
16 O -0.55 -21.35 15.52 -3.02 -0.05 -21.40 16
17 C -0.11 -3.96 6.16 71.24 0.44 -3.53 16
18 S -0.17 -8.22 18.55 -56.49 -1.05 -9.26 16
19 C -0.53 -29.91 10.04 67.95 0.68 -29.23 16
20 H 0.06 3.66 8.03 -2.91 -0.02 3.63 16
21 C 0.05 2.63 5.50 84.86 0.47 3.09 16
22 N -0.92 -54.93 13.97 21.65 0.30 -54.62 16
23 Si 0.91 43.82 27.74 68.60 1.90 45.73 16
24 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16
25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16
26 H -0.24 -11.25 6.74 99.48 0.67 -10.58 16
27 O -0.19 -3.97 9.88 13.56 0.13 -3.84 16
28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16
30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16
32 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16
33 H 0.41 6.92 7.89 -92.70 -0.73 6.19 16
34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16
36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16
38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
39 H 0.41 6.25 8.60 -92.71 -0.80 5.45 16
40 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16
41 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16
42 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16
Total: -1.00 -75.09 383.90 2.08 -73.01
By element:
Atomic # 1 Polarization: 18.79 SS G_CDS: -0.50 Total: 18.29 kcal
Atomic # 6 Polarization: -4.08 SS G_CDS: 6.60 Total: 2.52 kcal
Atomic # 7 Polarization: -81.19 SS G_CDS: -4.21 Total: -85.41 kcal
Atomic # 8 Polarization: -44.21 SS G_CDS: -0.67 Total: -44.88 kcal
Atomic # 14 Polarization: 43.82 SS G_CDS: 1.90 Total: 45.73 kcal
Atomic # 16 Polarization: -8.22 SS G_CDS: -1.05 Total: -9.26 kcal
Total: -75.09 2.08 -73.01 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001533997639.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.796 kcal
(2) G-P(sol) polarization free energy of solvation -75.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds