Wall clock time and date at job start Sat Apr 11 2020 06:29:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46899 * 1
3 3 C 1.46907 * 110.99539 * 2 1
4 4 C 1.46896 * 111.00147 * 123.95180 * 2 1 3
5 5 H 1.08995 * 109.47047 * 211.48181 * 4 2 1
6 6 C 1.52998 * 109.47217 * 331.48393 * 4 2 1
7 7 N 1.46507 * 109.47196 * 295.96250 * 6 4 2
8 8 C 1.34778 * 119.99996 * 172.95859 * 7 6 4
9 9 O 1.21280 * 119.99774 * 0.02562 * 8 7 6
10 10 C 1.50702 * 119.99826 * 180.02562 * 8 7 6
11 11 S 1.81000 * 109.46966 * 180.02562 * 10 8 7
12 12 C 1.76203 * 99.99768 * 180.02562 * 11 10 8
13 13 H 1.07997 * 120.00331 * 359.97438 * 12 11 10
14 14 C 1.38799 * 119.99587 * 180.02562 * 12 11 10
15 15 N 1.31625 * 120.00469 * 359.97438 * 14 12 11
16 16 Si 1.86806 * 119.99518 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.46960 * 89.99728 * 16 14 12
18 18 H 1.48504 * 109.46852 * 209.99470 * 16 14 12
19 19 H 1.48497 * 109.47071 * 329.99439 * 16 14 12
20 20 C 1.50703 * 109.47110 * 91.48310 * 4 2 1
21 21 C 1.38241 * 119.98292 * 138.69678 * 20 4 2
22 22 C 1.38214 * 120.00769 * 179.97438 * 21 20 4
23 23 C 1.38357 * 119.98937 * 0.02562 * 22 21 20
24 24 Cl 1.73595 * 120.01332 * 179.97438 * 23 22 21
25 25 C 1.38354 * 119.97199 * 0.27954 * 23 22 21
26 26 C 1.38217 * 119.98364 * 359.40077 * 25 23 22
27 27 H 1.08997 * 109.47538 * 309.03097 * 1 2 3
28 28 H 1.09004 * 109.47495 * 69.03544 * 1 2 3
29 29 H 1.09008 * 109.47192 * 189.03021 * 1 2 3
30 30 H 1.09003 * 109.46836 * 176.25434 * 3 2 1
31 31 H 1.08999 * 109.46981 * 296.25117 * 3 2 1
32 32 H 1.08997 * 109.47025 * 56.24939 * 3 2 1
33 33 H 1.09000 * 109.47421 * 55.96257 * 6 4 2
34 34 H 1.09001 * 109.47199 * 175.96578 * 6 4 2
35 35 H 0.97000 * 119.99470 * 352.96427 * 7 6 4
36 36 H 1.09002 * 109.46517 * 299.99958 * 10 8 7
37 37 H 1.08997 * 109.47101 * 59.99999 * 10 8 7
38 38 H 0.96998 * 120.00162 * 180.02562 * 15 14 12
39 39 H 1.07994 * 119.99751 * 0.02562 * 21 20 4
40 40 H 1.08003 * 120.00817 * 180.02562 * 22 21 20
41 41 H 1.08003 * 120.00590 * 179.72439 * 25 23 22
42 42 H 1.07997 * 119.99026 * 180.33009 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.9955 -0.7659 1.1376
5 1 2.9438 -0.3348 1.4581
6 6 0.9950 -0.7143 2.2939
7 7 0.8594 0.6677 2.7611
8 6 -0.0751 0.9795 3.6809
9 8 -0.8034 0.1159 4.1222
10 6 -0.2148 2.4011 4.1611
11 16 -1.5451 2.4966 5.3847
12 6 -1.4903 4.2167 5.7626
13 1 -0.7701 4.8547 5.2721
14 6 -2.3721 4.7515 6.6915
15 7 -3.2495 3.9739 7.2898
16 14 -2.3135 6.5751 7.0927
17 1 -3.2203 7.3127 6.1769
18 1 -2.7482 6.7872 8.4967
19 1 -0.9254 7.0747 6.9235
20 6 2.2098 -2.1987 0.7224
21 6 3.3424 -2.8755 1.1351
22 6 3.5392 -4.1897 0.7550
23 6 2.6029 -4.8276 -0.0390
24 17 2.8498 -6.4780 -0.5172
25 6 1.4727 -4.1477 -0.4569
26 6 1.2737 -2.8356 -0.0707
27 1 -0.3634 0.6471 0.7983
28 1 -0.3634 0.3677 -0.9596
29 1 -0.3634 -1.0150 0.1613
30 1 3.0829 1.3433 0.0671
31 1 1.7012 1.8736 -0.9217
32 1 1.5925 1.9153 0.8544
33 1 0.0261 -1.0791 1.9528
34 1 1.3518 -1.3408 3.1114
35 1 1.4422 1.3582 2.4084
36 1 0.7212 2.7244 4.6165
37 1 -0.4505 3.0483 3.3163
38 1 -3.8660 4.3478 7.9387
39 1 4.0730 -2.3775 1.7552
40 1 4.4239 -4.7186 1.0778
41 1 0.7436 -4.6438 -1.0803
42 1 0.3889 -2.3065 -0.3924
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000531306174.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:28
Heat of formation + Delta-G solvation = -20.649233 kcal
Electronic energy + Delta-G solvation = -24434.653722 eV
Core-core repulsion = 20759.447319 eV
Total energy + Delta-G solvation = -3675.206403 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.091 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.46442 -40.29577 -38.75915 -37.30567 -35.11604 -34.59337 -32.97261 -32.03384
-31.22058 -28.85158 -28.65579 -27.65987 -25.41660 -23.77467 -23.33921 -21.93058
-21.22683 -19.84935 -18.26245 -17.75256 -17.53122 -17.46269 -16.88893 -16.56562
-16.45353 -15.83051 -15.68566 -15.59272 -15.42242 -14.68292 -14.51847 -14.45424
-14.39417 -14.25270 -13.93756 -13.49295 -13.18155 -13.17003 -12.94559 -12.90238
-12.81561 -12.63970 -12.44934 -12.37973 -12.18270 -11.95004 -11.74644 -11.61375
-11.15388 -11.05204 -10.30901 -10.29445 -9.95637 -9.56314 -9.30466 -8.68376
-8.35748 -6.14050 0.13668 0.37747 1.18159 1.24916 1.41895 1.45678
1.55152 1.56044 2.16625 2.26288 2.61196 2.96008 2.98558 3.28647
3.63340 3.74631 3.82790 3.95947 3.97683 4.05967 4.20895 4.24806
4.40614 4.43378 4.46009 4.47524 4.60169 4.60617 4.71234 4.75229
4.82051 4.96258 5.06265 5.11164 5.23757 5.30850 5.33980 5.40887
5.54722 5.84876 5.92747 6.03147 6.18673 6.36533 7.05657 7.15442
8.73335
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.025861 B = 0.001964 C = 0.001897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1082.448561 B =14252.419827 C =14753.674998
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.010 3.990
2 N -0.533 5.533
3 C 0.015 3.985
4 C 0.121 3.879
5 H 0.115 0.885
6 C 0.097 3.903
7 N -0.713 5.713
8 C 0.535 3.465
9 O -0.561 6.561
10 C -0.130 4.130
11 S -0.149 6.149
12 C -0.546 4.546
13 H 0.083 0.917
14 C 0.013 3.987
15 N -0.911 5.911
16 Si 0.998 3.002
17 H -0.268 1.268
18 H -0.278 1.278
19 H -0.257 1.257
20 C -0.069 4.069
21 C -0.098 4.098
22 C -0.116 4.116
23 C -0.047 4.047
24 Cl -0.078 7.078
25 C -0.120 4.120
26 C -0.096 4.096
27 H 0.025 0.975
28 H 0.079 0.921
29 H 0.072 0.928
30 H 0.087 0.913
31 H 0.079 0.921
32 H 0.028 0.972
33 H 0.068 0.932
34 H 0.065 0.935
35 H 0.411 0.589
36 H 0.109 0.891
37 H 0.109 0.891
38 H 0.271 0.729
39 H 0.154 0.846
40 H 0.148 0.852
41 H 0.140 0.860
42 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.355 -11.981 -19.629 28.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 N -0.256 5.256
3 C -0.133 4.133
4 C 0.011 3.989
5 H 0.133 0.867
6 C -0.028 4.028
7 N -0.370 5.370
8 C 0.321 3.679
9 O -0.439 6.439
10 C -0.281 4.281
11 S 0.078 5.922
12 C -0.694 4.694
13 H 0.101 0.899
14 C -0.192 4.192
15 N -0.547 5.547
16 Si 0.820 3.180
17 H -0.193 1.193
18 H -0.204 1.204
19 H -0.181 1.181
20 C -0.070 4.070
21 C -0.117 4.117
22 C -0.134 4.134
23 C -0.073 4.073
24 Cl -0.049 7.049
25 C -0.139 4.139
26 C -0.114 4.114
27 H 0.044 0.956
28 H 0.097 0.903
29 H 0.090 0.910
30 H 0.106 0.894
31 H 0.097 0.903
32 H 0.047 0.953
33 H 0.087 0.913
34 H 0.083 0.917
35 H 0.251 0.749
36 H 0.128 0.872
37 H 0.127 0.873
38 H 0.080 0.920
39 H 0.171 0.829
40 H 0.165 0.835
41 H 0.158 0.842
42 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 16.210 -13.798 -19.274 28.717
hybrid contribution 0.298 2.200 0.514 2.279
sum 16.508 -11.599 -18.760 27.550
Atomic orbital electron populations
1.22723 0.87463 1.01901 1.01735 1.62201 1.07951 1.14736 1.40710
1.22702 1.01383 0.87572 1.01646 1.20850 0.98375 0.91959 0.87672
0.86741 1.22105 1.00715 0.82771 0.97219 1.46001 1.36981 1.11283
1.42727 1.20069 0.79737 0.89525 0.78593 1.90705 1.44956 1.50797
1.57450 1.23368 1.04571 0.96626 1.03524 1.85603 1.43253 1.12997
1.50365 1.23196 1.23367 0.93628 1.29187 0.89858 1.26132 0.93895
1.04509 0.94665 1.70177 1.19842 1.37971 1.26742 0.84956 0.79272
0.76170 0.77604 1.19315 1.20372 1.18127 1.19700 0.95041 0.94497
0.97789 1.21228 0.97332 0.93745 0.99369 1.21234 0.99317 0.95202
0.97680 1.21139 0.97945 0.86434 1.01792 1.98369 1.96705 1.18872
1.90958 1.21231 0.96861 0.94901 1.00886 1.21302 0.99814 0.93524
0.96754 0.95643 0.90264 0.90959 0.89405 0.90257 0.95337 0.91338
0.91707 0.74897 0.87233 0.87322 0.91993 0.82859 0.83471 0.84189
0.84258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.16 7.65 127.69 0.98 1.14 16
2 N -0.53 -7.64 4.52 -927.72 -4.20 -11.84 16
3 C 0.01 0.17 9.13 127.69 1.17 1.33 16
4 C 0.12 1.72 2.28 44.17 0.10 1.83 16
5 H 0.11 1.21 7.38 -2.39 -0.02 1.19 16
6 C 0.10 2.02 4.36 86.38 0.38 2.40 16
7 N -0.71 -16.67 4.01 -463.05 -1.86 -18.53 16
8 C 0.53 18.89 7.85 87.66 0.69 19.57 16
9 O -0.56 -25.35 15.84 -3.03 -0.05 -25.40 16
10 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16
11 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16
12 C -0.55 -30.68 9.50 67.95 0.65 -30.04 16
13 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16
14 C 0.01 0.72 5.49 84.86 0.47 1.19 16
15 N -0.91 -55.51 13.22 21.65 0.29 -55.22 16
16 Si 1.00 42.98 29.55 68.60 2.03 45.01 16
17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16
19 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16
20 C -0.07 -1.05 4.95 -19.86 -0.10 -1.14 16
21 C -0.10 -1.29 9.67 22.26 0.22 -1.07 16
22 C -0.12 -1.63 9.83 22.29 0.22 -1.41 16
23 C -0.05 -0.76 6.32 22.33 0.14 -0.62 16
24 Cl -0.08 -1.25 28.96 -2.72 -0.08 -1.32 16
25 C -0.12 -1.94 9.83 22.29 0.22 -1.72 16
26 C -0.10 -1.55 9.13 22.26 0.20 -1.35 16
27 H 0.02 0.53 6.30 -2.39 -0.02 0.52 16
28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
29 H 0.07 1.23 4.42 -2.38 -0.01 1.22 16
30 H 0.09 0.72 7.86 -2.39 -0.02 0.70 16
31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
32 H 0.03 0.34 5.54 -2.39 -0.01 0.33 16
33 H 0.07 1.68 5.93 -2.39 -0.01 1.66 16
34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.41 7.11 5.73 -92.71 -0.53 6.58 16
36 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16
37 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16
38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16
39 H 0.15 1.28 8.03 -2.91 -0.02 1.25 16
40 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16
41 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16
42 H 0.14 2.15 4.93 -2.91 -0.01 2.13 16
Total: -1.00 -74.54 369.20 1.25 -73.29
By element:
Atomic # 1 Polarization: 17.21 SS G_CDS: 0.52 Total: 17.74 kcal
Atomic # 6 Polarization: -20.17 SS G_CDS: 5.76 Total: -14.41 kcal
Atomic # 7 Polarization: -79.81 SS G_CDS: -5.77 Total: -85.58 kcal
Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal
Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal
Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal
Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.32 kcal
Total: -74.54 1.25 -73.29 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000531306174.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.637 kcal
(2) G-P(sol) polarization free energy of solvation -74.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.903 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.649 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds