Wall clock time and date at job start Sat Apr 11 2020 06:28:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42901 * 113.99954 * 2 1
4 4 C 1.53006 * 109.47166 * 180.02562 * 3 2 1
5 5 N 1.46492 * 109.46878 * 64.99799 * 4 3 2
6 6 C 1.46504 * 120.00311 * 269.99535 * 5 4 3
7 7 C 1.50698 * 109.47349 * 270.00726 * 6 5 4
8 8 H 1.07997 * 119.99923 * 359.97438 * 7 6 5
9 9 C 1.37879 * 119.99733 * 180.02562 * 7 6 5
10 10 N 1.31514 * 120.00234 * 359.97438 * 9 7 6
11 11 Si 1.86803 * 119.99754 * 179.97438 * 9 7 6
12 12 H 1.48499 * 109.47011 * 359.97438 * 11 9 7
13 13 H 1.48496 * 109.47143 * 119.99764 * 11 9 7
14 14 H 1.48497 * 109.46897 * 239.99596 * 11 9 7
15 15 C 1.34781 * 120.00034 * 90.00594 * 5 4 3
16 16 O 1.21599 * 120.00286 * 179.97438 * 15 5 4
17 17 N 1.34780 * 119.99706 * 359.97438 * 15 5 4
18 18 C 1.39786 * 119.99851 * 179.97438 * 17 15 5
19 19 C 1.33448 * 124.74249 * 180.02562 * 18 17 15
20 20 C 1.44559 * 112.92738 * 180.02562 * 19 18 17
21 21 C 1.47013 * 123.45282 * 180.02562 * 20 19 18
22 22 O 1.21567 * 119.99519 * 359.97438 * 21 20 19
23 23 O 1.34801 * 119.99938 * 179.97438 * 21 20 19
24 24 C 1.45201 * 116.99989 * 180.02562 * 23 21 20
25 25 C 1.36004 * 113.10123 * 0.02562 * 20 19 18
26 26 S 1.70419 * 110.94918 * 0.26749 * 25 20 19
27 27 H 1.08997 * 109.46702 * 180.02562 * 1 2 3
28 28 H 1.09004 * 109.47121 * 299.99677 * 1 2 3
29 29 H 1.08999 * 109.47199 * 60.00016 * 1 2 3
30 30 H 1.08998 * 109.47355 * 60.00188 * 3 2 1
31 31 H 1.08998 * 109.47301 * 299.99946 * 3 2 1
32 32 H 1.09001 * 109.46468 * 304.99981 * 4 3 2
33 33 H 1.08999 * 109.46659 * 184.99883 * 4 3 2
34 34 H 1.09001 * 109.46550 * 30.01123 * 6 5 4
35 35 H 1.08998 * 109.46767 * 150.00059 * 6 5 4
36 36 H 0.96999 * 119.99943 * 180.02562 * 10 9 7
37 37 H 0.96998 * 120.00243 * 0.02562 * 17 15 5
38 38 H 1.08006 * 123.53695 * 0.04490 * 19 18 17
39 39 H 1.09009 * 109.47151 * 299.99693 * 24 23 21
40 40 H 1.09000 * 109.47126 * 59.99231 * 24 23 21
41 41 H 1.08997 * 109.47722 * 180.02562 * 24 23 21
42 42 H 1.08002 * 124.52231 * 179.97438 * 25 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 -0.0006
5 7 3.9756 0.5644 -1.2527
6 6 4.1053 -0.8921 -1.3427
7 6 5.5010 -1.2978 -0.9448
8 1 6.2198 -0.5458 -0.6544
9 6 5.8607 -2.6288 -0.9527
10 7 4.9855 -3.5444 -1.3069
11 14 7.5910 -3.1316 -0.4602
12 1 8.3767 -1.9217 -0.1080
13 1 7.5276 -4.0400 0.7129
14 1 8.2444 -3.8328 -1.5944
15 6 4.2615 1.3338 -2.3218
16 8 4.6273 0.8190 -3.3609
17 7 4.1420 2.6737 -2.2391
18 6 4.4390 3.4716 -3.3477
19 6 4.3542 4.8032 -3.3709
20 6 4.7208 5.3687 -4.6498
21 6 4.7107 6.8117 -4.9308
22 8 4.3812 7.5974 -4.0636
23 8 5.0667 7.2635 -6.1499
24 6 5.0338 8.7004 -6.3559
25 6 5.0761 4.4290 -5.5666
26 16 4.9667 2.8617 -4.9064
27 1 -0.3632 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.6887 1.8464 0.8900
31 1 1.6886 1.8464 -0.8900
32 1 3.8514 0.5682 0.8410
33 1 3.9785 2.1766 0.0889
34 1 3.3853 -1.3629 -0.6734
35 1 3.9120 -1.2114 -2.3668
36 1 5.2385 -4.4808 -1.3120
37 1 3.8506 3.0844 -1.4100
38 1 4.0445 5.3963 -2.5230
39 1 4.0207 9.0679 -6.1917
40 1 5.7137 9.1837 -5.6543
41 1 5.3415 8.9284 -7.3763
42 1 5.3818 4.6467 -6.5793
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000610902257.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:28:56
Heat of formation + Delta-G solvation = -134.339755 kcal
Electronic energy + Delta-G solvation = -27268.914416 eV
Core-core repulsion = 23148.068857 eV
Total energy + Delta-G solvation = -4120.845559 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.62449 -41.35097 -38.95157 -38.47815 -37.33979 -36.70908 -35.69015 -34.61263
-31.16108 -30.53582 -28.92343 -28.26651 -27.12370 -25.95325 -25.00989 -24.12654
-22.83594 -21.84649 -20.60481 -19.06864 -18.87856 -18.56685 -18.55139 -17.52401
-17.35305 -17.23316 -17.04964 -16.80545 -16.41403 -16.29235 -15.84739 -15.61714
-14.96372 -14.74563 -14.65379 -14.34970 -13.94588 -13.84089 -13.76131 -13.53208
-13.33372 -13.08711 -12.96436 -12.87725 -12.75377 -12.55643 -12.23953 -12.15169
-12.00711 -11.89593 -11.78840 -11.65289 -11.61103 -10.90779 -10.60612 -10.55118
-9.66330 -9.51166 -8.99607 -8.16351 -6.30388 -0.24817 0.32428 0.67744
1.02426 1.38998 1.40709 1.43398 1.53478 1.91280 1.96346 2.21254
2.41977 2.88136 2.92354 3.14222 3.95649 4.03507 4.09291 4.17853
4.27310 4.33370 4.33480 4.36557 4.41466 4.52514 4.52677 4.59125
4.73514 4.79000 4.86086 4.88468 5.02431 5.08272 5.29421 5.30870
5.36051 5.54496 5.76761 5.94671 6.11376 6.32418 6.70535 6.78464
6.88586 7.31405 7.46187 8.90463
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.012288 B = 0.002970 C = 0.002550
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2278.120449 B = 9425.249742 C =10979.836412
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.413 6.413
3 C 0.043 3.957
4 C 0.101 3.899
5 N -0.597 5.597
6 C 0.287 3.713
7 C -0.540 4.540
8 H 0.053 0.947
9 C 0.010 3.990
10 N -0.926 5.926
11 Si 0.964 3.036
12 H -0.268 1.268
13 H -0.272 1.272
14 H -0.282 1.282
15 C 0.688 3.312
16 O -0.598 6.598
17 N -0.643 5.643
18 C 0.032 3.968
19 C -0.148 4.148
20 C -0.151 4.151
21 C 0.534 3.466
22 O -0.537 6.537
23 O -0.357 6.357
24 C 0.029 3.971
25 C -0.220 4.220
26 S 0.300 5.700
27 H 0.082 0.918
28 H 0.062 0.938
29 H 0.042 0.958
30 H 0.095 0.905
31 H 0.049 0.951
32 H 0.088 0.912
33 H 0.116 0.884
34 H 0.034 0.966
35 H -0.002 1.002
36 H 0.266 0.734
37 H 0.425 0.575
38 H 0.164 0.836
39 H 0.063 0.937
40 H 0.063 0.937
41 H 0.134 0.866
42 H 0.200 0.800
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.939 20.825 -3.693 21.719
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.333 6.333
3 C -0.034 4.034
4 C -0.021 4.021
5 N -0.329 5.329
6 C 0.166 3.834
7 C -0.579 4.579
8 H 0.071 0.929
9 C -0.189 4.189
10 N -0.566 5.566
11 Si 0.789 3.211
12 H -0.192 1.192
13 H -0.198 1.198
14 H -0.208 1.208
15 C 0.390 3.610
16 O -0.478 6.478
17 N -0.294 5.294
18 C -0.182 4.182
19 C -0.179 4.179
20 C -0.167 4.167
21 C 0.379 3.621
22 O -0.430 6.430
23 O -0.274 6.274
24 C -0.064 4.064
25 C -0.359 4.359
26 S 0.563 5.437
27 H 0.100 0.900
28 H 0.081 0.919
29 H 0.060 0.940
30 H 0.113 0.887
31 H 0.067 0.933
32 H 0.106 0.894
33 H 0.134 0.866
34 H 0.052 0.948
35 H 0.016 0.984
36 H 0.074 0.926
37 H 0.266 0.734
38 H 0.182 0.818
39 H 0.082 0.918
40 H 0.082 0.918
41 H 0.152 0.848
42 H 0.217 0.783
Dipole moment (debyes) X Y Z Total
from point charges -4.456 18.804 -4.657 19.878
hybrid contribution 0.057 1.340 1.214 1.809
sum -4.400 20.144 -3.442 20.904
Atomic orbital electron populations
1.22852 0.80016 1.03154 1.00731 1.88040 1.21105 1.28601 1.95511
1.23190 0.93278 0.85113 1.01826 1.21898 0.93341 0.99951 0.86952
1.47310 1.67220 1.07942 1.10460 1.18673 0.95609 0.73294 0.95847
1.21757 0.98212 0.92509 1.45393 0.92891 1.25783 1.01508 0.96446
0.95196 1.70068 1.36325 1.01405 1.48821 0.85420 0.79447 0.78279
0.77939 1.19191 1.19775 1.20824 1.16128 0.79258 0.80976 0.84688
1.90776 1.54891 1.71883 1.30274 1.42016 1.69860 1.03734 1.13775
1.21851 1.08385 0.93327 0.94654 1.20549 1.08085 0.90762 0.98551
1.18836 1.12943 0.90047 0.94912 1.20538 0.72728 0.88620 0.80181
1.90814 1.46437 1.58380 1.47320 1.86551 1.79194 1.28906 1.32723
1.23594 1.02991 0.75061 1.04715 1.26720 1.03227 1.00327 1.05631
1.84950 1.60315 0.99866 0.98574 0.89958 0.91941 0.93966 0.88696
0.93255 0.89351 0.86578 0.94762 0.98436 0.92552 0.73397 0.81814
0.91787 0.91849 0.84763 0.78265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.67 11.01 113.37 1.25 1.92 16
2 O -0.41 -13.36 9.53 -148.98 -1.42 -14.78 16
3 C 0.04 1.07 6.28 71.98 0.45 1.52 16
4 C 0.10 2.92 5.58 86.38 0.48 3.40 16
5 N -0.60 -24.40 2.42 -844.18 -2.04 -26.44 16
6 C 0.29 15.24 4.98 85.63 0.43 15.66 16
7 C -0.54 -30.62 9.39 25.60 0.24 -30.38 16
8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16
9 C 0.01 0.55 5.46 84.66 0.46 1.02 16
10 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16
11 Si 0.96 44.76 29.54 68.60 2.03 46.78 16
12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
14 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16
15 C 0.69 27.63 8.25 179.05 1.48 29.10 16
16 O -0.60 -28.76 13.39 -4.03 -0.05 -28.81 16
17 N -0.64 -18.98 5.30 -320.74 -1.70 -20.68 16
18 C 0.03 0.92 7.11 82.34 0.59 1.51 16
19 C -0.15 -3.76 10.11 22.80 0.23 -3.53 16
20 C -0.15 -3.80 5.98 -19.88 -0.12 -3.92 16
21 C 0.53 13.48 7.92 70.12 0.56 14.04 16
22 O -0.54 -15.81 16.59 19.62 0.33 -15.49 16
23 O -0.36 -7.29 10.21 -57.13 -0.58 -7.87 16
24 C 0.03 0.39 10.57 113.37 1.20 1.59 16
25 C -0.22 -5.05 10.54 67.30 0.71 -4.34 16
26 S 0.30 8.76 20.06 -56.49 -1.13 7.63 16
27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16
29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16
30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.09 2.79 8.07 -2.39 -0.02 2.77 16
33 H 0.12 2.33 6.36 -2.39 -0.02 2.31 16
34 H 0.03 1.92 7.11 -2.39 -0.02 1.90 16
35 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16
36 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16
37 H 0.42 9.21 6.53 -92.71 -0.61 8.61 16
38 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16
39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16
40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
41 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16
42 H 0.20 3.42 8.01 -2.91 -0.02 3.40 16
Total: -1.00 -78.01 377.62 4.10 -73.91
By element:
Atomic # 1 Polarization: 13.26 SS G_CDS: 0.45 Total: 13.71 kcal
Atomic # 6 Polarization: 19.64 SS G_CDS: 7.95 Total: 27.59 kcal
Atomic # 7 Polarization: -99.22 SS G_CDS: -3.46 Total: -102.68 kcal
Atomic # 8 Polarization: -65.21 SS G_CDS: -1.73 Total: -66.94 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal
Atomic # 16 Polarization: 8.76 SS G_CDS: -1.13 Total: 7.63 kcal
Total: -78.01 4.10 -73.91 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000610902257.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.431 kcal
(2) G-P(sol) polarization free energy of solvation -78.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds