Wall clock time and date at job start Sat Apr 11 2020 06:31:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30823 * 1
3 3 Si 1.86799 * 119.99638 * 2 1
4 4 H 1.48495 * 109.47142 * 269.99293 * 3 2 1
5 5 H 1.48492 * 109.47579 * 29.99724 * 3 2 1
6 6 H 1.48506 * 109.46671 * 149.99893 * 3 2 1
7 7 C 1.39945 * 120.00149 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00142 * 169.72429 * 7 2 1
9 9 C 1.41401 * 119.99895 * 349.72153 * 7 2 1
10 10 C 1.40731 * 120.24728 * 330.77907 * 9 7 2
11 11 C 1.37592 * 119.74636 * 180.31771 * 10 9 7
12 12 C 1.38659 * 120.25053 * 359.66133 * 11 10 9
13 13 C 1.38611 * 120.49886 * 0.02562 * 12 11 10
14 14 C 1.37640 * 120.24790 * 0.02562 * 13 12 11
15 15 C 1.50706 * 120.12876 * 179.97438 * 14 13 12
16 16 C 1.50699 * 109.46726 * 265.00110 * 15 14 13
17 17 O 1.21281 * 120.00436 * 359.97438 * 16 15 14
18 18 N 1.34774 * 119.99713 * 179.97438 * 16 15 14
19 19 N 1.40104 * 119.99860 * 180.02562 * 18 16 15
20 20 C 1.39013 * 119.99739 * 180.02562 * 19 18 16
21 21 N 1.32426 * 119.70668 * 4.30920 * 20 19 18
22 22 C 1.31946 * 121.61929 * 180.29317 * 21 20 19
23 23 C 1.38058 * 120.85565 * 359.72558 * 22 21 20
24 24 C 1.38841 * 119.32822 * 0.02562 * 23 22 21
25 25 C 1.38335 * 118.50526 * 359.97438 * 24 23 22
26 26 N 1.48025 * 120.44894 * 179.97438 * 25 24 23
27 27 O 1.21804 * 120.00278 * 142.64121 * 26 25 24
28 28 O 1.21805 * 119.99923 * 322.36240 * 26 25 24
29 29 H 0.96998 * 120.00200 * 0.02562 * 1 2 3
30 30 H 1.08007 * 120.12553 * 0.02562 * 10 9 7
31 31 H 1.07999 * 119.88072 * 179.67742 * 11 10 9
32 32 H 1.07996 * 119.75001 * 180.02562 * 12 11 10
33 33 H 1.08000 * 119.87988 * 180.02562 * 13 12 11
34 34 H 1.09002 * 109.47194 * 145.00015 * 15 14 13
35 35 H 1.08993 * 109.46701 * 25.00023 * 15 14 13
36 36 H 0.97006 * 120.00320 * 359.97438 * 18 16 15
37 37 H 0.96998 * 120.00178 * 359.97438 * 19 18 16
38 38 H 1.08001 * 119.56726 * 179.75020 * 22 21 20
39 39 H 1.08005 * 120.33638 * 180.02562 * 23 22 21
40 40 H 1.08003 * 120.74479 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2421 1.6178 0.0000
4 1 2.4897 2.0464 -1.4000
5 1 1.4396 2.6527 0.6999
6 1 3.5397 1.4402 0.7001
7 6 2.0080 -1.2119 0.0005
8 1 3.0750 -1.2195 -0.1663
9 6 1.3180 -2.4266 0.2196
10 6 0.1523 -2.4475 1.0078
11 6 -0.5073 -3.6363 1.2196
12 6 -0.0315 -4.8096 0.6541
13 6 1.1120 -4.7997 -0.1293
14 6 1.7885 -3.6222 -0.3537
15 6 3.0318 -3.6147 -1.2054
16 6 4.2471 -3.7245 -0.3211
17 8 4.1166 -3.8008 0.8823
18 7 5.4790 -3.7378 -0.8674
19 7 6.6089 -3.8404 -0.0453
20 6 7.8796 -3.8536 -0.6088
21 7 8.0202 -3.6830 -1.9145
22 6 9.2077 -3.6945 -2.4897
23 6 10.3541 -3.8807 -1.7434
24 6 10.2505 -4.0582 -0.3703
25 6 8.9922 -4.0414 0.2044
26 7 8.8318 -4.2269 1.6642
27 8 7.9822 -3.5971 2.2685
28 8 9.5460 -5.0132 2.2603
29 1 -0.4850 0.8400 -0.0004
30 1 -0.2205 -1.5347 1.4486
31 1 -1.3991 -3.6558 1.8284
32 1 -0.5558 -5.7381 0.8253
33 1 1.4735 -5.7193 -0.5652
34 1 3.0780 -2.6850 -1.7727
35 1 3.0058 -4.4594 -1.8937
36 1 5.5835 -3.6771 -1.8299
37 1 6.5044 -3.9015 0.9171
38 1 9.2836 -3.5560 -3.5581
39 1 11.3219 -3.8881 -2.2229
40 1 11.1323 -4.2061 0.2355
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000777524180.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:11
Heat of formation + Delta-G solvation = 41.444806 kcal
Electronic energy + Delta-G solvation = -28665.036245 eV
Core-core repulsion = 24448.662077 eV
Total energy + Delta-G solvation = -4216.374168 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.116 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-43.46874 -41.65194 -40.88696 -39.26758 -37.93298 -37.21999 -35.49970 -34.26591
-34.00915 -33.21652 -31.36967 -30.65298 -28.40428 -27.76213 -26.86400 -24.60951
-24.17576 -22.85221 -22.63180 -21.40576 -20.46369 -19.96590 -19.76829 -19.23417
-19.04781 -18.37601 -17.45651 -17.30496 -16.85150 -16.67096 -16.28387 -16.05891
-15.86343 -15.50819 -15.11214 -15.02071 -14.77354 -14.39619 -13.96161 -13.60793
-13.40231 -13.31994 -12.92156 -12.90523 -12.80926 -12.70452 -12.53721 -12.49567
-12.44621 -12.15416 -11.61038 -11.36370 -11.27178 -11.25079 -11.07507 -11.05499
-10.87994 -9.22627 -9.18590 -9.01127 -8.57608 -6.34520 -1.22240 -0.06438
-0.03829 0.23099 0.49532 1.00829 1.15716 1.33774 1.44866 1.49752
1.54596 2.18379 2.34306 2.43157 2.78490 2.96726 3.37382 3.58395
3.71277 3.82571 3.99071 4.19890 4.34558 4.38269 4.54009 4.57092
4.68777 4.75233 4.81380 4.99588 5.01541 5.13215 5.18042 5.34285
5.35266 5.52152 5.75579 5.80699 6.00369 6.13885 6.18859 6.25561
6.31278 6.39343 6.53734 6.71834 6.97151 7.08183 7.17883 8.38038
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.011927 B = 0.003129 C = 0.002866
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2347.080721 B = 8947.741687 C = 9768.525302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.830 5.830
2 C 0.037 3.963
3 Si 0.970 3.030
4 H -0.252 1.252
5 H -0.268 1.268
6 H -0.274 1.274
7 C -0.484 4.484
8 H 0.068 0.932
9 C 0.097 3.903
10 C -0.187 4.187
11 C -0.117 4.117
12 C -0.238 4.238
13 C -0.090 4.090
14 C -0.188 4.188
15 C -0.052 4.052
16 C 0.516 3.484
17 O -0.565 6.565
18 N -0.513 5.513
19 N -0.512 5.512
20 C 0.444 3.556
21 N -0.547 5.547
22 C 0.210 3.790
23 C -0.204 4.204
24 C 0.031 3.969
25 C -0.184 4.184
26 N 0.042 4.958
27 O -0.249 6.249
28 O -0.123 6.123
29 H 0.285 0.715
30 H 0.098 0.902
31 H 0.106 0.894
32 H 0.117 0.883
33 H 0.121 0.879
34 H 0.110 0.890
35 H 0.128 0.872
36 H 0.444 0.556
37 H 0.439 0.561
38 H 0.226 0.774
39 H 0.206 0.794
40 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.906 -6.045 -11.649 25.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.457 5.457
2 C -0.177 4.177
3 Si 0.792 3.208
4 H -0.177 1.177
5 H -0.192 1.192
6 H -0.199 1.199
7 C -0.514 4.514
8 H 0.086 0.914
9 C 0.095 3.905
10 C -0.207 4.207
11 C -0.136 4.136
12 C -0.257 4.257
13 C -0.108 4.108
14 C -0.190 4.190
15 C -0.093 4.093
16 C 0.304 3.696
17 O -0.441 6.441
18 N -0.264 5.264
19 N -0.239 5.239
20 C 0.204 3.796
21 N -0.267 5.267
22 C 0.050 3.950
23 C -0.226 4.226
24 C 0.005 3.995
25 C -0.278 4.278
26 N 0.553 4.447
27 O -0.439 6.439
28 O -0.353 6.353
29 H 0.096 0.904
30 H 0.116 0.884
31 H 0.124 0.876
32 H 0.135 0.865
33 H 0.139 0.861
34 H 0.128 0.872
35 H 0.146 0.854
36 H 0.289 0.711
37 H 0.287 0.713
38 H 0.243 0.757
39 H 0.223 0.777
40 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges 20.531 -5.578 -11.984 24.418
hybrid contribution 0.402 0.747 1.636 1.842
sum 20.933 -4.831 -10.348 23.846
Atomic orbital electron populations
1.69851 1.08559 1.30041 1.37254 1.26592 0.95496 1.03919 0.91698
0.85380 0.78616 0.77014 0.79775 1.17663 1.19229 1.19886 1.19591
0.95215 0.91407 1.45220 0.91410 1.17733 0.91636 0.92770 0.88342
1.21365 0.99788 0.96777 1.02771 1.20990 0.99150 0.93467 0.99966
1.20764 1.00771 0.97296 1.06855 1.20777 0.95404 0.96451 0.98151
1.19488 0.99421 0.94156 1.05977 1.20227 0.86760 1.05956 0.96340
1.21930 0.83064 0.74677 0.89885 1.90734 1.86086 1.49949 1.17286
1.45158 0.96447 1.76893 1.07891 1.44215 0.96252 1.75629 1.07827
1.17995 0.82238 0.89123 0.90280 1.67630 1.30636 1.23069 1.05375
1.23935 0.84871 0.83154 1.03070 1.22493 1.03167 1.05917 0.91056
1.21714 0.93517 0.87003 0.97314 1.21500 0.97993 1.29730 0.78579
1.43817 0.98907 0.97918 1.04030 1.94585 1.31258 1.48671 1.69416
1.94466 1.41609 1.29141 1.70130 0.90421 0.88371 0.87606 0.86508
0.86128 0.87203 0.85406 0.71124 0.71305 0.75748 0.77668 0.79916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -44.30 10.85 21.83 0.24 -44.07 16
2 C 0.04 1.90 5.26 85.26 0.45 2.34 16
3 Si 0.97 39.95 29.57 68.60 2.03 41.98 16
4 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16
5 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16
6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16
7 C -0.48 -26.34 8.07 23.46 0.19 -26.15 16
8 H 0.07 3.62 6.77 -2.91 -0.02 3.60 16
9 C 0.10 5.33 5.55 -21.29 -0.12 5.22 16
10 C -0.19 -10.43 8.66 22.73 0.20 -10.23 16
11 C -0.12 -5.79 10.02 22.22 0.22 -5.56 16
12 C -0.24 -10.73 10.05 22.46 0.23 -10.50 16
13 C -0.09 -3.96 9.66 22.22 0.21 -3.74 16
14 C -0.19 -8.90 4.43 -19.40 -0.09 -8.98 16
15 C -0.05 -1.91 5.19 29.10 0.15 -1.76 16
16 C 0.52 20.20 7.54 87.66 0.66 20.86 16
17 O -0.57 -28.22 15.87 -3.03 -0.05 -28.27 16
18 N -0.51 -15.90 6.29 -173.54 -1.09 -16.99 16
19 N -0.51 -16.50 6.32 -55.44 -0.35 -16.85 16
20 C 0.44 11.08 7.56 133.04 1.01 12.08 16
21 N -0.55 -9.87 9.38 -193.26 -1.81 -11.68 16
22 C 0.21 1.55 11.17 84.63 0.95 2.50 16
23 C -0.20 -0.94 10.10 22.37 0.23 -0.71 16
24 C 0.03 0.36 9.80 22.44 0.22 0.58 16
25 C -0.18 -4.19 6.53 36.60 0.24 -3.95 16
26 N 0.04 1.24 4.33 -45.91 -0.20 1.04 16
27 O -0.25 -9.07 16.66 18.88 0.31 -8.75 16
28 O -0.12 -3.46 19.00 18.88 0.36 -3.11 16
29 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16
30 H 0.10 5.74 6.24 -2.91 -0.02 5.72 16
31 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16
32 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16
33 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16
34 H 0.11 3.92 7.14 -2.39 -0.02 3.90 16
35 H 0.13 3.48 8.05 -2.39 -0.02 3.46 16
36 H 0.44 10.60 7.96 -213.31 -1.70 8.91 16
37 H 0.44 16.55 5.36 -213.32 -1.14 15.40 16
38 H 0.23 -0.49 8.06 -2.91 -0.02 -0.51 16
39 H 0.21 -0.97 8.06 -2.91 -0.02 -0.99 16
40 H 0.18 1.24 8.05 -2.91 -0.02 1.21 16
Total: -1.00 -79.68 357.34 2.48 -77.21
By element:
Atomic # 1 Polarization: 39.21 SS G_CDS: -1.70 Total: 37.51 kcal
Atomic # 6 Polarization: -32.75 SS G_CDS: 4.74 Total: -28.01 kcal
Atomic # 7 Polarization: -85.35 SS G_CDS: -3.22 Total: -88.56 kcal
Atomic # 8 Polarization: -40.75 SS G_CDS: 0.63 Total: -40.13 kcal
Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal
Total: -79.68 2.48 -77.21 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000777524180.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.653 kcal
(2) G-P(sol) polarization free energy of solvation -79.685 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds