Wall clock time and date at job start Sat Apr 11 2020 06:31:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81393 * 1
3 3 O 1.42101 * 110.54254 * 2 1
4 4 O 1.42097 * 110.54657 * 223.24773 * 2 1 3
5 5 C 1.76204 * 104.44955 * 111.62388 * 2 1 3
6 6 C 1.35129 * 125.61746 * 89.98334 * 5 2 1
7 7 C 1.40362 * 107.11476 * 179.78342 * 6 5 2
8 8 C 1.36541 * 106.70850 * 0.40739 * 7 6 5
9 9 C 1.46657 * 125.98780 * 179.85088 * 8 7 6
10 10 O 1.21699 * 120.00054 * 359.71821 * 9 8 7
11 11 N 1.34773 * 120.00085 * 179.71656 * 9 8 7
12 12 C 1.46498 * 120.00285 * 180.02562 * 11 9 8
13 13 H 1.09001 * 109.50124 * 35.06511 * 12 11 9
14 14 C 1.53037 * 109.52906 * 155.11402 * 12 11 9
15 15 C 1.53038 * 109.54214 * 181.29681 * 14 12 11
16 16 C 1.53191 * 109.34152 * 298.68565 * 15 14 12
17 17 N 1.46925 * 108.77463 * 54.61574 * 16 15 14
18 18 C 1.36934 * 120.62881 * 126.41501 * 17 16 15
19 19 H 1.07999 * 120.00238 * 207.67150 * 18 17 16
20 20 C 1.38813 * 120.00212 * 27.66499 * 18 17 16
21 21 N 1.31618 * 119.99784 * 17.37115 * 20 18 17
22 22 Si 1.86798 * 120.00239 * 197.36648 * 20 18 17
23 23 H 1.48495 * 109.47216 * 0.02562 * 22 20 18
24 24 H 1.48502 * 109.46727 * 120.00490 * 22 20 18
25 25 H 1.48501 * 109.46989 * 240.00226 * 22 20 18
26 26 C 1.46925 * 118.73947 * 306.39535 * 17 16 15
27 27 O 1.33933 * 125.61409 * 270.02697 * 5 2 1
28 28 H 1.09002 * 109.47323 * 308.37541 * 1 2 3
29 29 H 1.08999 * 109.47618 * 68.37683 * 1 2 3
30 30 H 1.09009 * 109.47351 * 188.37752 * 1 2 3
31 31 H 1.08003 * 126.43878 * 0.03481 * 6 5 2
32 32 H 1.08008 * 126.64749 * 180.30102 * 7 6 5
33 33 H 0.97008 * 119.99926 * 0.02562 * 11 9 8
34 34 H 1.09002 * 109.43391 * 61.29419 * 14 12 11
35 35 H 1.08999 * 109.48608 * 301.33963 * 14 12 11
36 36 H 1.08999 * 109.49614 * 178.70829 * 15 14 12
37 37 H 1.09006 * 109.49634 * 58.65457 * 15 14 12
38 38 H 1.08996 * 109.58281 * 174.40715 * 16 15 14
39 39 H 1.09004 * 109.58459 * 294.68493 * 16 15 14
40 40 H 0.97006 * 120.00403 * 179.97438 * 21 20 18
41 41 H 1.08997 * 109.58320 * 173.39910 * 26 17 16
42 42 H 1.09007 * 109.58169 * 293.81941 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 8 2.3126 1.3307 0.0000
4 8 2.3126 -0.9692 -0.9117
5 6 2.2536 -0.6288 1.5862
6 6 2.4497 -1.9308 1.8899
7 6 2.7868 -1.9913 3.2511
8 6 2.7703 -0.7079 3.7170
9 6 3.0589 -0.2863 5.0917
10 8 3.3399 -1.1162 5.9363
11 7 3.0128 1.0201 5.4196
12 6 3.3016 1.4413 6.7927
13 1 4.0738 0.7987 7.2157
14 6 3.7897 2.8917 6.7910
15 6 4.1221 3.3217 8.2216
16 6 2.8585 3.2371 9.0835
17 7 2.3017 1.8818 8.9747
18 6 2.0419 1.1421 10.0974
19 1 2.0697 0.0634 10.0518
20 6 1.7429 1.7787 11.2941
21 7 1.3735 3.0419 11.2932
22 14 1.8648 0.8424 12.9060
23 1 2.2985 -0.5520 12.6369
24 1 2.8555 1.5067 13.7905
25 1 0.5375 0.8286 13.5719
26 6 2.0287 1.3354 7.6384
27 8 2.4477 0.1050 2.6897
28 1 -0.3634 0.6380 0.8057
29 1 -0.3634 0.3787 -0.9553
30 1 -0.3634 -1.0168 0.1497
31 1 2.3669 -2.7673 1.2117
32 1 3.0136 -2.8808 3.8202
33 1 2.7885 1.6815 4.7465
34 1 3.0078 3.5370 6.3904
35 1 4.6818 2.9744 6.1703
36 1 4.4914 4.3472 8.2167
37 1 4.8869 2.6617 8.6314
38 1 3.1106 3.4463 10.1230
39 1 2.1268 3.9644 8.7315
40 1 1.1642 3.4868 12.1294
41 1 1.7331 0.2898 7.7247
42 1 1.2283 1.9058 7.1670
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001008726023.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:13
Heat of formation + Delta-G solvation = -44.500299 kcal
Electronic energy + Delta-G solvation = -27538.547337 eV
Core-core repulsion = 23421.597509 eV
Total energy + Delta-G solvation = -4116.949828 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-41.88224 -41.53756 -39.81778 -37.66876 -35.57116 -35.51933 -34.43279 -34.20243
-32.51316 -31.50544 -29.80939 -29.12831 -28.37530 -25.61741 -25.13407 -23.20641
-22.12263 -21.40432 -20.82366 -20.26401 -19.25697 -18.70217 -17.70705 -17.41134
-17.28732 -16.94810 -16.74040 -16.33361 -15.92281 -15.70383 -15.06336 -15.01364
-14.94269 -14.92613 -14.58866 -14.48096 -14.29650 -14.00823 -13.78748 -13.43459
-13.09576 -12.92079 -12.79440 -12.76186 -12.53879 -12.45819 -12.31290 -12.20135
-11.98106 -11.80195 -11.25285 -11.10324 -10.98807 -10.91981 -10.71288 -10.21350
-10.09157 -9.94784 -9.65821 -8.43136 -4.35786 -1.82868 0.35234 0.67129
0.73293 1.04680 1.65223 1.83752 2.07431 2.20360 2.34669 2.69913
2.88115 3.18828 3.27499 3.40108 3.43566 3.63400 3.73772 3.86786
3.98663 4.19308 4.20046 4.23976 4.34596 4.50311 4.51706 4.70607
4.81648 4.83268 4.86388 4.91161 4.94370 5.02506 5.09478 5.18694
5.23138 5.55628 5.60574 5.61329 5.72055 5.94178 5.96608 6.31900
6.59846 6.80375 7.39070 7.73154
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.021890 B = 0.002350 C = 0.002267
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1278.805525 B =11911.375772 C =12349.913200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.710 4.710
2 S 1.973 4.027
3 O -1.106 7.106
4 O -1.119 7.119
5 C -0.446 4.446
6 C -0.312 4.312
7 C -0.120 4.120
8 C -0.279 4.279
9 C 0.614 3.386
10 O -0.590 6.590
11 N -0.727 5.727
12 C 0.131 3.869
13 H 0.095 0.905
14 C -0.144 4.144
15 C -0.124 4.124
16 C 0.070 3.930
17 N -0.409 5.409
18 C 0.358 3.642
19 H 0.258 0.742
20 C -0.081 4.081
21 N -0.528 5.528
22 Si 1.031 2.969
23 H -0.217 1.217
24 H -0.246 1.246
25 H -0.253 1.253
26 C 0.056 3.944
27 O -0.188 6.188
28 H 0.046 0.954
29 H 0.017 0.983
30 H 0.039 0.961
31 H 0.092 0.908
32 H 0.132 0.868
33 H 0.407 0.593
34 H 0.087 0.913
35 H 0.071 0.929
36 H 0.121 0.879
37 H 0.089 0.911
38 H 0.142 0.858
39 H 0.129 0.871
40 H 0.380 0.620
41 H 0.128 0.872
42 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.657 16.041 64.779 66.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.825 4.825
2 S 2.148 3.852
3 O -1.103 7.103
4 O -1.116 7.116
5 C -0.589 4.589
6 C -0.340 4.340
7 C -0.146 4.146
8 C -0.337 4.337
9 C 0.410 3.590
10 O -0.479 6.479
11 N -0.378 5.378
12 C 0.026 3.974
13 H 0.113 0.887
14 C -0.182 4.182
15 C -0.162 4.162
16 C -0.049 4.049
17 N -0.077 5.077
18 C 0.177 3.823
19 H 0.273 0.727
20 C -0.316 4.316
21 N -0.154 5.154
22 Si 0.843 3.157
23 H -0.139 1.139
24 H -0.170 1.170
25 H -0.177 1.177
26 C -0.066 4.066
27 O -0.094 6.094
28 H 0.065 0.935
29 H 0.037 0.963
30 H 0.058 0.942
31 H 0.111 0.889
32 H 0.150 0.850
33 H 0.242 0.758
34 H 0.105 0.895
35 H 0.090 0.910
36 H 0.139 0.861
37 H 0.107 0.893
38 H 0.159 0.841
39 H 0.146 0.854
40 H 0.201 0.799
41 H 0.147 0.853
42 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 0.954 16.728 63.924 66.084
hybrid contribution -0.953 -0.533 -0.975 1.464
sum 0.001 16.195 62.950 64.999
Atomic orbital electron populations
1.30587 1.53893 0.99594 0.98405 1.51239 0.82527 0.72103 0.79305
1.92462 1.83871 1.45756 1.88257 1.92506 1.84614 1.63675 1.70842
1.38042 1.06697 1.01680 1.12523 1.20777 1.20736 0.96514 0.95963
1.21489 1.03083 0.96674 0.93342 1.21612 1.27914 0.91481 0.92706
1.16010 0.77118 0.82765 0.83113 1.90559 1.55181 1.52952 1.49160
1.45646 1.73312 1.06830 1.11991 1.21390 0.96229 0.98031 0.81765
0.88687 1.22045 1.03420 0.93079 0.99705 1.22018 0.96569 1.05840
0.91819 1.23364 0.96795 0.79441 1.05282 1.49484 1.34150 1.16381
1.07728 1.26896 0.70815 1.02329 0.82211 0.72652 1.28446 0.98777
0.98348 1.06047 1.69894 0.96291 1.08154 1.41093 0.84126 0.81616
0.80283 0.69668 1.13861 1.16970 1.17659 1.23588 0.99894 1.04178
0.78990 1.84016 1.74310 1.34929 1.16192 0.93490 0.96338 0.94150
0.88927 0.85046 0.75774 0.89485 0.91032 0.86090 0.89264 0.84054
0.85352 0.79948 0.85343 0.84744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.71 -55.23 10.79 113.37 1.22 -54.01 16
2 S 1.97 169.28 5.95 -56.49 -0.34 168.94 16
3 O -1.11 -99.38 17.95 -126.79 -2.28 -101.66 16
4 O -1.12 -102.96 17.70 -127.65 -2.26 -105.22 16
5 C -0.45 -35.95 6.97 67.10 0.47 -35.48 16
6 C -0.31 -23.81 10.51 22.07 0.23 -23.58 16
7 C -0.12 -7.91 10.62 22.39 0.24 -7.68 16
8 C -0.28 -17.27 7.13 24.07 0.17 -17.09 16
9 C 0.61 27.09 7.75 86.44 0.67 27.76 16
10 O -0.59 -24.85 16.53 -4.35 -0.07 -24.93 16
11 N -0.73 -21.40 5.08 -446.16 -2.27 -23.67 16
12 C 0.13 1.41 2.60 45.07 0.12 1.53 16
13 H 0.10 1.13 7.58 -2.39 -0.02 1.12 16
14 C -0.14 -0.63 5.36 30.62 0.16 -0.47 16
15 C -0.12 0.89 6.08 30.67 0.19 1.07 16
16 C 0.07 -0.91 5.31 86.36 0.46 -0.46 16
17 N -0.41 4.95 2.99 -699.10 -2.09 2.86 16
18 C 0.36 -6.97 9.59 84.03 0.81 -6.16 16
19 H 0.26 -6.90 7.89 -2.91 -0.02 -6.92 16
20 C -0.08 1.61 4.91 84.86 0.42 2.03 16
21 N -0.53 9.10 11.19 21.65 0.24 9.34 16
22 Si 1.03 -18.34 29.59 68.60 2.03 -16.32 16
23 H -0.22 3.69 7.11 99.48 0.71 4.40 16
24 H -0.25 3.54 7.11 99.48 0.71 4.25 16
25 H -0.25 3.29 7.11 99.48 0.71 4.00 16
26 C 0.06 -0.03 6.09 86.36 0.53 0.50 16
27 O -0.19 -13.63 10.40 -5.08 -0.05 -13.68 16
28 H 0.05 3.42 8.14 -2.39 -0.02 3.40 16
29 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16
30 H 0.04 3.00 8.14 -2.39 -0.02 2.98 16
31 H 0.09 7.09 8.06 -2.91 -0.02 7.06 16
32 H 0.13 7.61 8.06 -2.91 -0.02 7.59 16
33 H 0.41 13.29 8.36 -92.70 -0.77 12.52 16
34 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16
35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
36 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16
37 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16
38 H 0.14 -2.55 6.04 -2.39 -0.01 -2.56 16
39 H 0.13 -1.67 8.14 -2.38 -0.02 -1.69 16
40 H 0.38 -7.47 8.31 -92.70 -0.77 -8.24 16
41 H 0.13 0.04 7.93 -2.39 -0.02 0.02 16
42 H 0.13 -0.02 8.14 -2.38 -0.02 -0.04 16
Total: -1.00 -186.83 367.90 -1.13 -187.95
By element:
Atomic # 1 Polarization: 28.12 SS G_CDS: 0.28 Total: 28.40 kcal
Atomic # 6 Polarization: -117.70 SS G_CDS: 5.68 Total: -112.03 kcal
Atomic # 7 Polarization: -7.35 SS G_CDS: -4.12 Total: -11.47 kcal
Atomic # 8 Polarization: -240.83 SS G_CDS: -4.66 Total: -245.49 kcal
Atomic # 14 Polarization: -18.34 SS G_CDS: 2.03 Total: -16.32 kcal
Atomic # 16 Polarization: 169.28 SS G_CDS: -0.34 Total: 168.94 kcal
Total: -186.83 -1.13 -187.95 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001008726023.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.452 kcal
(2) G-P(sol) polarization free energy of solvation -186.826 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -187.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds