Wall clock time and date at job start Sat Apr 11 2020 06:32:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 O 1.42098 * 110.53989 * 2 1
4 4 O 1.42103 * 110.54193 * 223.25045 * 2 1 3
5 5 C 1.76198 * 104.45039 * 111.62880 * 2 1 3
6 6 C 1.34173 * 125.44128 * 90.00201 * 5 2 1
7 7 C 1.47016 * 105.95738 * 180.02562 * 6 5 2
8 8 C 1.47379 * 127.19547 * 179.97438 * 7 6 5
9 9 O 1.21617 * 120.00104 * 0.02562 * 8 7 6
10 10 N 1.34783 * 120.00271 * 179.97438 * 8 7 6
11 11 C 1.46497 * 120.00028 * 180.02562 * 10 8 7
12 12 C 1.53003 * 109.47017 * 180.02562 * 11 10 8
13 13 H 1.09004 * 112.84496 * 43.80429 * 12 11 10
14 14 C 1.53778 * 113.61196 * 174.99730 * 12 11 10
15 15 C 1.53787 * 87.08035 * 140.06532 * 14 12 11
16 16 H 1.09004 * 113.61202 * 89.11582 * 15 14 12
17 17 N 1.46496 * 113.61566 * 220.01945 * 15 14 12
18 18 C 1.36938 * 119.99833 * 204.99709 * 17 15 14
19 19 H 1.08001 * 120.00007 * 0.02562 * 18 17 15
20 20 C 1.38814 * 120.00036 * 179.97438 * 18 17 15
21 21 N 1.31623 * 119.99771 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 120.00257 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.46984 * 90.00165 * 22 20 18
24 24 H 1.48493 * 109.47102 * 210.00263 * 22 20 18
25 25 H 1.48498 * 109.46647 * 330.00241 * 22 20 18
26 26 C 1.53778 * 113.68969 * 272.53495 * 12 11 10
27 27 C 1.36418 * 105.61502 * 0.25868 * 7 6 5
28 28 O 1.33649 * 108.39796 * 359.57792 * 27 7 6
29 29 H 1.08997 * 109.47292 * 308.37261 * 1 2 3
30 30 H 1.09003 * 109.47295 * 68.37589 * 1 2 3
31 31 H 1.09009 * 109.46804 * 188.37306 * 1 2 3
32 32 H 1.08006 * 127.02340 * 359.97438 * 6 5 2
33 33 H 0.96999 * 119.99784 * 0.02562 * 10 8 7
34 34 H 1.08994 * 109.47253 * 60.00133 * 11 10 8
35 35 H 1.08999 * 109.47048 * 300.00272 * 11 10 8
36 36 H 1.08998 * 113.61879 * 25.52015 * 14 12 11
37 37 H 1.08999 * 113.61887 * 254.61122 * 14 12 11
38 38 H 0.96998 * 120.00377 * 24.99850 * 17 15 14
39 39 H 0.96998 * 120.00014 * 180.02562 * 21 20 18
40 40 H 1.08993 * 113.61229 * 105.46192 * 26 12 11
41 41 H 1.09000 * 113.61263 * 334.55842 * 26 12 11
42 42 H 1.07998 * 125.80325 * 179.73835 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9118
5 6 2.2537 -0.6289 1.5861
6 6 2.4479 -1.9228 1.8835
7 6 2.7931 -1.9617 3.3121
8 6 3.0997 -3.1539 4.1224
9 8 3.0825 -4.2574 3.6114
10 7 3.4002 -3.0213 5.4296
11 6 3.7055 -4.2063 6.2349
12 6 4.0090 -3.7813 7.6731
13 1 3.3101 -3.0346 8.0501
14 6 4.2240 -4.9637 8.6324
15 6 5.3601 -4.1423 9.2646
16 1 5.0307 -3.4943 10.0768
17 7 6.5375 -4.9410 9.6140
18 6 7.3844 -4.5158 10.6025
19 1 7.1842 -3.5919 11.1247
20 6 8.4998 -5.2728 10.9340
21 7 8.7435 -6.3990 10.2979
22 14 9.6548 -4.6932 12.2829
23 1 9.2044 -5.2389 13.5885
24 1 11.0311 -5.1706 11.9951
25 1 9.6469 -3.2092 12.3374
26 6 5.4846 -3.4205 7.9124
27 6 2.7640 -0.6642 3.7323
28 8 2.4473 0.1099 2.6899
29 1 -0.3634 0.6379 0.8056
30 1 -0.3634 0.3787 -0.9554
31 1 -0.3633 -1.0168 0.1497
32 1 2.3663 -2.7640 1.2111
33 1 3.4143 -2.1411 5.8371
34 1 4.5726 -4.7168 5.8159
35 1 2.8490 -4.8804 6.2287
36 1 4.5658 -5.8721 8.1363
37 1 3.3847 -5.1382 9.3056
38 1 6.7172 -5.7709 9.1453
39 1 9.5226 -6.9282 10.5298
40 1 5.6627 -2.3492 8.0042
41 1 6.1709 -3.9069 7.2193
42 1 2.9655 -0.3206 4.7362
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086091546.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:27
Heat of formation + Delta-G solvation = -51.041474 kcal
Electronic energy + Delta-G solvation = -26136.967496 eV
Core-core repulsion = 22019.734021 eV
Total energy + Delta-G solvation = -4117.233474 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-43.17086 -39.79815 -38.47798 -37.75270 -36.60845 -34.86530 -33.62593 -33.27891
-31.12141 -30.27354 -30.06688 -27.53952 -25.16474 -24.37841 -23.52174 -22.86884
-21.19071 -21.09231 -19.77842 -19.09153 -18.80345 -17.33442 -17.10286 -16.88529
-16.60210 -16.35579 -16.26589 -16.08461 -15.40415 -14.89173 -14.71101 -14.24410
-13.92902 -13.87327 -13.79011 -13.64419 -13.39136 -13.29158 -12.98385 -12.74150
-12.63744 -12.14319 -11.98266 -11.89231 -11.66520 -11.48144 -11.29369 -10.88042
-10.61155 -10.54813 -10.43091 -10.19915 -10.07461 -9.88971 -9.81802 -9.55983
-9.18853 -8.90962 -7.00458 -5.81686 -3.10920 -0.72055 0.54200 1.06289
1.88147 2.39787 2.92722 2.99847 3.20227 3.40264 3.45373 3.47376
3.59841 4.01079 4.09022 4.13215 4.32388 4.54825 4.63620 4.75469
4.87261 4.93697 4.98991 5.09632 5.14739 5.40197 5.42566 5.45765
5.72978 5.77149 5.86144 6.03661 6.05508 6.11926 6.23116 6.28376
6.34358 6.52304 6.75210 7.04768 7.24186 7.65397 7.94730 8.36701
9.47807 10.05667 10.39635 11.40560
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.026577 B = 0.001653 C = 0.001623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1053.300603 B =16931.920048 C =17252.389601
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.644 4.644
2 S 2.531 3.469
3 O -0.918 6.918
4 O -0.914 6.914
5 C -0.569 4.569
6 C -0.034 4.034
7 C -0.247 4.247
8 C 0.582 3.418
9 O -0.532 6.532
10 N -0.719 5.719
11 C 0.132 3.868
12 C -0.128 4.128
13 H 0.088 0.912
14 C -0.142 4.142
15 C 0.166 3.834
16 H 0.075 0.925
17 N -0.712 5.712
18 C -0.246 4.246
19 H 0.071 0.929
20 C -0.013 4.013
21 N -0.931 5.931
22 Si 0.908 3.092
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.282 1.282
26 C -0.162 4.162
27 C 0.066 3.934
28 O -0.119 6.119
29 H 0.137 0.863
30 H 0.140 0.860
31 H 0.136 0.864
32 H 0.180 0.820
33 H 0.398 0.602
34 H 0.073 0.927
35 H 0.068 0.932
36 H 0.081 0.919
37 H 0.062 0.938
38 H 0.386 0.614
39 H 0.256 0.744
40 H 0.054 0.946
41 H 0.079 0.921
42 H 0.225 0.775
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.860 14.998 -19.074 32.658
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.795 4.795
2 S 2.703 3.297
3 O -0.916 6.916
4 O -0.911 6.911
5 C -0.697 4.697
6 C -0.055 4.055
7 C -0.252 4.252
8 C 0.369 3.631
9 O -0.410 6.410
10 N -0.370 5.370
11 C 0.010 3.990
12 C -0.147 4.147
13 H 0.106 0.894
14 C -0.182 4.182
15 C 0.054 3.946
16 H 0.093 0.907
17 N -0.350 5.350
18 C -0.377 4.377
19 H 0.089 0.911
20 C -0.209 4.209
21 N -0.579 5.579
22 Si 0.739 3.261
23 H -0.217 1.217
24 H -0.217 1.217
25 H -0.207 1.207
26 C -0.203 4.203
27 C -0.009 4.009
28 O -0.012 6.012
29 H 0.156 0.844
30 H 0.158 0.842
31 H 0.155 0.845
32 H 0.197 0.803
33 H 0.232 0.768
34 H 0.092 0.908
35 H 0.086 0.914
36 H 0.100 0.900
37 H 0.081 0.919
38 H 0.220 0.780
39 H 0.066 0.934
40 H 0.072 0.928
41 H 0.097 0.903
42 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -21.168 14.784 -19.851 32.568
hybrid contribution 0.381 -0.150 1.592 1.644
sum -20.787 14.634 -18.259 31.299
Atomic orbital electron populations
1.30195 1.24065 1.12664 1.12555 1.05049 0.78308 0.74523 0.71800
1.93620 1.77457 1.35736 1.84755 1.93674 1.77991 1.62358 1.57075
1.35350 1.23934 1.00137 1.10236 1.23009 0.92204 0.95999 0.94297
1.21811 1.13897 0.94209 0.95302 1.17136 0.77133 0.87296 0.81558
1.90828 1.52090 1.26403 1.71652 1.45890 1.70653 1.11300 1.09112
1.21516 1.01201 0.86481 0.89828 1.22654 0.98865 1.00252 0.92955
0.89352 1.23454 1.00006 0.97193 0.97526 1.21510 0.87527 0.92610
0.92967 0.90652 1.42409 1.24562 1.25424 1.42627 1.19296 1.02802
1.04723 1.10901 0.91092 1.24782 0.98961 0.97145 1.00007 1.69660
1.29539 1.14878 1.43833 0.86182 0.80407 0.77871 0.81671 1.21672
1.21742 1.20744 1.23973 0.93403 1.00554 1.02373 1.25099 0.94107
0.89049 0.92597 1.83939 1.66476 1.35829 1.14957 0.84438 0.84205
0.84516 0.80283 0.76846 0.90845 0.91407 0.90031 0.91931 0.78040
0.93409 0.92767 0.90280 0.75910
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.64 -0.69 10.80 101.05 1.09 0.40 16
2 S 2.53 14.32 5.94 -107.50 -0.64 13.68 16
3 O -0.92 -8.50 17.95 -58.50 -1.05 -9.55 16
4 O -0.91 -8.06 17.69 -57.54 -1.02 -9.08 16
5 C -0.57 -4.37 6.94 29.30 0.20 -4.17 16
6 C -0.03 -0.31 10.63 -37.46 -0.40 -0.71 16
7 C -0.25 -2.38 6.31 -103.28 -0.65 -3.04 16
8 C 0.58 7.10 7.81 -12.54 -0.10 7.00 16
9 O -0.53 -8.67 16.98 5.26 0.09 -8.58 16
10 N -0.72 -7.26 5.55 -61.40 -0.34 -7.60 16
11 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16
12 C -0.13 -1.55 3.75 -89.81 -0.34 -1.89 16
13 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
14 C -0.14 -2.13 7.39 -25.92 -0.19 -2.32 16
15 C 0.17 3.08 4.48 -67.12 -0.30 2.78 16
16 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16
17 N -0.71 -17.41 5.40 -52.63 -0.28 -17.69 16
18 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16
19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16
20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16
21 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16
22 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16
23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
26 C -0.16 -2.52 7.43 -25.92 -0.19 -2.71 16
27 C 0.07 0.44 11.61 30.08 0.35 0.79 16
28 O -0.12 -0.93 10.52 7.63 0.08 -0.85 16
29 H 0.14 -0.02 8.14 -51.93 -0.42 -0.44 16
30 H 0.14 -0.08 8.14 -51.92 -0.42 -0.50 16
31 H 0.14 -0.03 8.14 -51.92 -0.42 -0.45 16
32 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16
33 H 0.40 2.70 7.44 -40.82 -0.30 2.40 16
34 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16
35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
36 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16
37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
38 H 0.39 10.08 7.92 -40.82 -0.32 9.76 16
39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16
41 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16
42 H 0.22 0.47 7.47 -52.49 -0.39 0.08 16
LS Contribution 378.06 15.07 5.70 5.70
Total: -1.00 -39.62 378.06 -8.16 -47.79
By element:
Atomic # 1 Polarization: 11.53 SS G_CDS: -5.61 Total: 5.92 kcal
Atomic # 6 Polarization: -8.82 SS G_CDS: -0.79 Total: -9.61 kcal
Atomic # 7 Polarization: -52.60 SS G_CDS: 0.10 Total: -52.50 kcal
Atomic # 8 Polarization: -26.17 SS G_CDS: -1.90 Total: -28.06 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal
Atomic # 16 Polarization: 14.32 SS G_CDS: -0.64 Total: 13.68 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -39.62 -8.16 -47.79 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086091546.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.255 kcal
(2) G-P(sol) polarization free energy of solvation -39.623 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.878 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.041 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds