Wall clock time and date at job start Sat Apr 11 2020 06:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 O 1.42098 * 110.53989 * 2 1
4 4 O 1.42103 * 110.54193 * 223.25045 * 2 1 3
5 5 C 1.76198 * 104.45039 * 111.62880 * 2 1 3
6 6 C 1.34173 * 125.44128 * 90.00201 * 5 2 1
7 7 C 1.47016 * 105.95738 * 180.02562 * 6 5 2
8 8 C 1.47379 * 127.19547 * 179.97438 * 7 6 5
9 9 O 1.21617 * 120.00104 * 0.02562 * 8 7 6
10 10 N 1.34783 * 120.00271 * 179.97438 * 8 7 6
11 11 C 1.46497 * 120.00028 * 180.02562 * 10 8 7
12 12 C 1.53003 * 109.47017 * 180.02562 * 11 10 8
13 13 H 1.09004 * 112.84496 * 43.80429 * 12 11 10
14 14 C 1.53778 * 113.61196 * 174.99730 * 12 11 10
15 15 C 1.53787 * 87.08035 * 140.06532 * 14 12 11
16 16 H 1.09004 * 113.61202 * 89.11582 * 15 14 12
17 17 N 1.46496 * 113.61566 * 220.01945 * 15 14 12
18 18 C 1.36938 * 119.99833 * 204.99709 * 17 15 14
19 19 H 1.08001 * 120.00007 * 0.02562 * 18 17 15
20 20 C 1.38814 * 120.00036 * 179.97438 * 18 17 15
21 21 N 1.31623 * 119.99771 * 0.02562 * 20 18 17
22 22 Si 1.86802 * 120.00257 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.46984 * 90.00165 * 22 20 18
24 24 H 1.48493 * 109.47102 * 210.00263 * 22 20 18
25 25 H 1.48498 * 109.46647 * 330.00241 * 22 20 18
26 26 C 1.53778 * 113.68969 * 272.53495 * 12 11 10
27 27 C 1.36418 * 105.61502 * 0.25868 * 7 6 5
28 28 O 1.33649 * 108.39796 * 359.57792 * 27 7 6
29 29 H 1.08997 * 109.47292 * 308.37261 * 1 2 3
30 30 H 1.09003 * 109.47295 * 68.37589 * 1 2 3
31 31 H 1.09009 * 109.46804 * 188.37306 * 1 2 3
32 32 H 1.08006 * 127.02340 * 359.97438 * 6 5 2
33 33 H 0.96999 * 119.99784 * 0.02562 * 10 8 7
34 34 H 1.08994 * 109.47253 * 60.00133 * 11 10 8
35 35 H 1.08999 * 109.47048 * 300.00272 * 11 10 8
36 36 H 1.08998 * 113.61879 * 25.52015 * 14 12 11
37 37 H 1.08999 * 113.61887 * 254.61122 * 14 12 11
38 38 H 0.96998 * 120.00377 * 24.99850 * 17 15 14
39 39 H 0.96998 * 120.00014 * 180.02562 * 21 20 18
40 40 H 1.08993 * 113.61229 * 105.46192 * 26 12 11
41 41 H 1.09000 * 113.61263 * 334.55842 * 26 12 11
42 42 H 1.07998 * 125.80325 * 179.73835 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3126 1.3306 0.0000
4 8 2.3126 -0.9692 -0.9118
5 6 2.2537 -0.6289 1.5861
6 6 2.4479 -1.9228 1.8835
7 6 2.7931 -1.9617 3.3121
8 6 3.0997 -3.1539 4.1224
9 8 3.0825 -4.2574 3.6114
10 7 3.4002 -3.0213 5.4296
11 6 3.7055 -4.2063 6.2349
12 6 4.0090 -3.7813 7.6731
13 1 3.3101 -3.0346 8.0501
14 6 4.2240 -4.9637 8.6324
15 6 5.3601 -4.1423 9.2646
16 1 5.0307 -3.4943 10.0768
17 7 6.5375 -4.9410 9.6140
18 6 7.3844 -4.5158 10.6025
19 1 7.1842 -3.5919 11.1247
20 6 8.4998 -5.2728 10.9340
21 7 8.7435 -6.3990 10.2979
22 14 9.6548 -4.6932 12.2829
23 1 9.2044 -5.2389 13.5885
24 1 11.0311 -5.1706 11.9951
25 1 9.6469 -3.2092 12.3374
26 6 5.4846 -3.4205 7.9124
27 6 2.7640 -0.6642 3.7323
28 8 2.4473 0.1099 2.6899
29 1 -0.3634 0.6379 0.8056
30 1 -0.3634 0.3787 -0.9554
31 1 -0.3633 -1.0168 0.1497
32 1 2.3663 -2.7640 1.2111
33 1 3.4143 -2.1411 5.8371
34 1 4.5726 -4.7168 5.8159
35 1 2.8490 -4.8804 6.2287
36 1 4.5658 -5.8721 8.1363
37 1 3.3847 -5.1382 9.3056
38 1 6.7172 -5.7709 9.1453
39 1 9.5226 -6.9282 10.5298
40 1 5.6627 -2.3492 8.0042
41 1 6.1709 -3.9069 7.2193
42 1 2.9655 -0.3206 4.7362
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086091546.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:26
Heat of formation + Delta-G solvation = -40.841081 kcal
Electronic energy + Delta-G solvation = -26136.525173 eV
Core-core repulsion = 22019.734021 eV
Total energy + Delta-G solvation = -4116.791152 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.113 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-41.96896 -41.40710 -40.13390 -38.78389 -35.98290 -34.93355 -34.86825 -33.80089
-32.68058 -30.23489 -29.24722 -28.05677 -27.84900 -26.83906 -24.36632 -23.16642
-22.45547 -21.50751 -21.11377 -20.20917 -19.12592 -18.73417 -17.91973 -17.20849
-16.89476 -16.86053 -16.49184 -16.13255 -16.08532 -15.78660 -15.50592 -15.30533
-14.89606 -14.62741 -14.46849 -14.34904 -14.20563 -14.03109 -13.58934 -13.48177
-13.36830 -12.92895 -12.80378 -12.57875 -12.49291 -12.33449 -12.30314 -12.01183
-11.81008 -11.59133 -11.22359 -10.95700 -10.89047 -10.57527 -10.45341 -10.19679
-9.81007 -9.75830 -9.19244 -8.58403 -4.10135 -1.70687 0.57901 0.75284
0.93007 1.27005 1.66621 1.89134 2.07635 2.11744 2.29157 2.67449
2.81155 3.06473 3.23082 3.30105 3.33352 3.62398 3.74317 3.87661
4.15137 4.25964 4.36336 4.40191 4.48355 4.60477 4.66944 4.70454
4.77749 4.90961 4.99407 5.08763 5.11165 5.16684 5.17752 5.25462
5.37555 5.50421 5.55263 5.64882 5.83673 5.88495 6.08690 6.24119
6.60587 6.69240 7.38109 7.53796
Molecular weight = 342.11amu
Principal moments of inertia in cm(-1)
A = 0.026577 B = 0.001653 C = 0.001623
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1053.300603 B =16931.920048 C =17252.389601
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.685 4.685
2 S 1.804 4.196
3 O -1.136 7.136
4 O -1.156 7.156
5 C -0.381 4.381
6 C -0.302 4.302
7 C -0.263 4.263
8 C 0.598 3.402
9 O -0.601 6.601
10 N -0.706 5.706
11 C 0.122 3.878
12 C -0.124 4.124
13 H 0.130 0.870
14 C -0.133 4.133
15 C 0.091 3.909
16 H 0.210 0.790
17 N -0.520 5.520
18 C 0.392 3.608
19 H 0.285 0.715
20 C -0.086 4.086
21 N -0.549 5.549
22 Si 1.030 2.970
23 H -0.244 1.244
24 H -0.276 1.276
25 H -0.203 1.203
26 C -0.147 4.147
27 C -0.074 4.074
28 O -0.187 6.187
29 H 0.031 0.969
30 H -0.004 1.004
31 H 0.021 0.979
32 H 0.075 0.925
33 H 0.416 0.584
34 H 0.056 0.944
35 H 0.050 0.950
36 H 0.095 0.905
37 H 0.113 0.887
38 H 0.437 0.563
39 H 0.379 0.621
40 H 0.114 0.886
41 H 0.086 0.914
42 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 35.513 -27.024 79.339 91.028
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.799 4.799
2 S 1.961 4.039
3 O -1.134 7.134
4 O -1.153 7.153
5 C -0.512 4.512
6 C -0.336 4.336
7 C -0.268 4.268
8 C 0.389 3.611
9 O -0.484 6.484
10 N -0.360 5.360
11 C 0.000 4.000
12 C -0.143 4.143
13 H 0.148 0.852
14 C -0.171 4.171
15 C -0.010 4.010
16 H 0.226 0.774
17 N -0.110 5.110
18 C 0.209 3.791
19 H 0.300 0.700
20 C -0.323 4.323
21 N -0.173 5.173
22 Si 0.844 3.156
23 H -0.168 1.168
24 H -0.201 1.201
25 H -0.124 1.124
26 C -0.185 4.185
27 C -0.149 4.149
28 O -0.087 6.087
29 H 0.050 0.950
30 H 0.015 0.985
31 H 0.040 0.960
32 H 0.093 0.907
33 H 0.253 0.747
34 H 0.074 0.926
35 H 0.068 0.932
36 H 0.113 0.887
37 H 0.132 0.868
38 H 0.279 0.721
39 H 0.199 0.801
40 H 0.133 0.867
41 H 0.104 0.896
42 H 0.261 0.739
Dipole moment (debyes) X Y Z Total
from point charges 35.395 -27.359 77.798 89.743
hybrid contribution -0.230 -1.163 -1.463 1.882
sum 35.165 -28.522 76.335 88.753
Atomic orbital electron populations
1.29955 1.56942 0.97101 0.95913 1.67255 0.83570 0.72378 0.80730
1.92227 1.84470 1.48606 1.88108 1.92272 1.85357 1.64399 1.73313
1.39905 1.00980 1.01466 1.08855 1.21536 1.21907 0.95645 0.94488
1.21544 1.16181 0.94732 0.94389 1.17401 0.74787 0.86252 0.82708
1.90624 1.55390 1.28699 1.73697 1.45478 1.71386 1.12055 1.07050
1.21556 1.00222 0.87038 0.91218 1.22723 0.99227 1.01038 0.91317
0.85214 1.23431 0.98900 0.97129 0.97664 1.24358 0.82047 0.94184
1.00451 0.77377 1.47566 1.18479 1.21700 1.23206 1.27042 0.79770
0.95094 0.77205 0.69956 1.28701 1.02077 0.96170 1.05364 1.69684
1.23036 1.03463 1.21126 0.84147 0.74494 0.83627 0.73348 1.16787
1.20081 1.12408 1.23694 0.95718 1.04109 0.94941 1.25084 1.04395
0.89537 0.95843 1.84134 1.69092 1.38476 1.17021 0.95013 0.98507
0.95989 0.90699 0.74663 0.92607 0.93170 0.88653 0.86839 0.72086
0.80112 0.86721 0.89588 0.73932
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 32.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.68 -62.11 10.80 113.37 1.22 -60.88 16
2 S 1.80 176.94 5.94 -56.49 -0.34 176.60 16
3 O -1.14 -116.43 17.95 -126.73 -2.27 -118.71 16
4 O -1.16 -121.16 17.69 -127.65 -2.26 -123.41 16
5 C -0.38 -33.57 6.94 66.89 0.46 -33.11 16
6 C -0.30 -25.04 10.63 23.65 0.25 -24.79 16
7 C -0.26 -16.58 6.31 -18.99 -0.12 -16.70 16
8 C 0.60 29.20 7.81 86.65 0.68 29.88 16
9 O -0.60 -34.33 16.98 -4.08 -0.07 -34.40 16
10 N -0.71 -18.73 5.55 -466.41 -2.59 -21.32 16
11 C 0.12 1.66 5.51 86.38 0.48 2.14 16
12 C -0.12 0.70 3.75 -10.27 -0.04 0.67 16
13 H 0.13 -0.98 8.14 -2.38 -0.02 -1.00 16
14 C -0.13 2.07 7.39 31.12 0.23 2.30 16
15 C 0.09 -2.37 4.48 45.52 0.20 -2.17 16
16 H 0.21 -7.42 8.10 -2.39 -0.02 -7.44 16
17 N -0.52 15.65 5.40 -320.43 -1.73 13.92 16
18 C 0.39 -14.28 9.97 84.03 0.84 -13.44 16
19 H 0.29 -13.91 7.83 -2.91 -0.02 -13.93 16
20 C -0.09 2.58 5.50 84.86 0.47 3.04 16
21 N -0.55 12.70 13.06 21.65 0.28 12.99 16
22 Si 1.03 -26.68 29.55 68.60 2.03 -24.65 16
23 H -0.24 5.38 7.11 99.48 0.71 6.09 16
24 H -0.28 4.90 7.11 99.48 0.71 5.60 16
25 H -0.20 5.51 7.11 99.48 0.71 6.21 16
26 C -0.15 2.06 7.43 31.12 0.23 2.29 16
27 C -0.07 -4.24 11.61 67.39 0.78 -3.45 16
28 O -0.19 -14.34 10.52 4.40 0.05 -14.29 16
29 H 0.03 2.68 8.14 -2.39 -0.02 2.66 16
30 H 0.00 -0.40 8.14 -2.39 -0.02 -0.42 16
31 H 0.02 1.87 8.14 -2.39 -0.02 1.85 16
32 H 0.07 6.62 8.06 -2.91 -0.02 6.60 16
33 H 0.42 7.75 7.44 -92.71 -0.69 7.06 16
34 H 0.06 0.86 7.85 -2.39 -0.02 0.84 16
35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
36 H 0.10 -1.28 8.08 -2.39 -0.02 -1.30 16
37 H 0.11 -1.93 8.14 -2.39 -0.02 -1.95 16
38 H 0.44 -11.80 7.92 -92.71 -0.73 -12.53 16
39 H 0.38 -8.71 8.31 -92.71 -0.77 -9.48 16
40 H 0.11 -1.78 8.14 -2.39 -0.02 -1.79 16
41 H 0.09 -0.83 7.90 -2.39 -0.02 -0.85 16
42 H 0.24 8.80 7.47 -2.91 -0.02 8.78 16
Total: -1.00 -250.07 378.06 -1.57 -251.64
By element:
Atomic # 1 Polarization: -3.79 SS G_CDS: -0.35 Total: -4.15 kcal
Atomic # 6 Polarization: -119.90 SS G_CDS: 5.69 Total: -114.21 kcal
Atomic # 7 Polarization: 9.62 SS G_CDS: -4.04 Total: 5.59 kcal
Atomic # 8 Polarization: -286.26 SS G_CDS: -4.56 Total: -290.81 kcal
Atomic # 14 Polarization: -26.68 SS G_CDS: 2.03 Total: -24.65 kcal
Atomic # 16 Polarization: 176.94 SS G_CDS: -0.34 Total: 176.60 kcal
Total: -250.07 -1.57 -251.64 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086091546.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 210.796 kcal
(2) G-P(sol) polarization free energy of solvation -250.069 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.567 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -251.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.22 seconds