Wall clock time and date at job start Sat Apr 11 2020 06:29:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31351 * 1
3 3 Si 1.86806 * 119.99849 * 2 1
4 4 H 1.48494 * 109.47144 * 269.99339 * 3 2 1
5 5 H 1.48504 * 109.47042 * 29.99860 * 3 2 1
6 6 H 1.48503 * 109.46958 * 149.99454 * 3 2 1
7 7 C 1.39074 * 120.00361 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00135 * 161.17980 * 7 2 1
9 9 N 1.36786 * 119.99520 * 341.18172 * 7 2 1
10 10 C 1.46502 * 120.00410 * 320.83756 * 9 7 2
11 11 C 1.50703 * 109.47311 * 270.00398 * 10 9 7
12 12 C 1.35346 * 126.91174 * 264.68424 * 11 10 9
13 13 N 1.33774 * 106.49531 * 179.90538 * 12 11 10
14 14 N 1.28628 * 108.88500 * 0.36620 * 13 12 11
15 15 N 1.28718 * 110.17956 * 359.76916 * 14 13 12
16 16 H 0.97002 * 125.86869 * 180.02562 * 15 14 13
17 17 C 1.34773 * 119.99898 * 140.83990 * 9 7 2
18 18 O 1.21715 * 120.00490 * 174.67306 * 17 9 7
19 19 C 1.46811 * 120.00216 * 354.95149 * 17 9 7
20 20 O 1.34950 * 125.13933 * 353.76239 * 19 17 9
21 21 C 1.34736 * 110.86185 * 179.97438 * 20 19 17
22 22 C 1.39005 * 133.22781 * 179.97438 * 21 20 19
23 23 C 1.37823 * 119.85838 * 180.02562 * 22 21 20
24 24 C 1.38828 * 120.75016 * 0.02562 * 23 22 21
25 25 C 1.36624 * 120.44002 * 359.97438 * 24 23 22
26 26 C 1.39726 * 119.70782 * 359.96097 * 25 24 23
27 27 C 1.35955 * 125.14493 * 173.46142 * 19 17 9
28 28 C 1.50691 * 126.97004 * 0.02562 * 27 19 17
29 29 O 1.42898 * 109.47421 * 90.02154 * 28 27 19
30 30 H 0.96997 * 119.99993 * 4.95816 * 1 2 3
31 31 H 1.09007 * 109.46600 * 30.00183 * 10 9 7
32 32 H 1.08997 * 109.47030 * 150.00067 * 10 9 7
33 33 H 1.08005 * 126.75153 * 0.03589 * 12 11 10
34 34 H 1.07999 * 120.07071 * 0.02562 * 22 21 20
35 35 H 1.08000 * 119.62470 * 180.02562 * 23 22 21
36 36 H 1.07999 * 119.77968 * 179.97438 * 24 23 22
37 37 H 1.08004 * 120.14551 * 179.97438 * 25 24 23
38 38 H 1.08996 * 109.47950 * 210.02891 * 28 27 19
39 39 H 1.09003 * 109.47127 * 330.02561 * 28 27 19
40 40 H 0.96699 * 114.00749 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3135 0.0000 0.0000
3 14 2.2475 1.6178 0.0000
4 1 2.4951 2.0464 -1.4000
5 1 1.4449 2.6527 0.7000
6 1 3.5450 1.4403 0.7002
7 6 2.0090 -1.2044 0.0005
8 1 3.0456 -1.2295 -0.3012
9 7 1.3798 -2.3571 0.3832
10 6 0.4376 -2.3399 1.5049
11 6 1.1785 -2.6164 2.7877
12 6 1.3203 -3.8137 3.4026
13 7 2.0496 -3.5921 4.5020
14 7 2.3336 -2.3393 4.5676
15 7 1.8308 -1.7166 3.5595
16 1 1.9068 -0.7658 3.3832
17 6 1.6268 -3.5089 -0.2717
18 8 1.1433 -4.5520 0.1279
19 6 2.4842 -3.5064 -1.4634
20 8 2.9794 -2.4028 -2.0618
21 6 3.7298 -2.7326 -3.1311
22 6 4.4424 -1.9847 -4.0612
23 6 5.1315 -2.6215 -5.0708
24 6 5.1231 -4.0061 -5.1723
25 6 4.4298 -4.7620 -4.2698
26 6 3.7258 -4.1360 -3.2379
27 6 2.9041 -4.6158 -2.1277
28 6 2.5854 -6.0494 -1.7898
29 8 1.3926 -6.4453 -2.4697
30 1 -0.4850 0.8369 -0.0726
31 1 -0.0388 -1.3612 1.5641
32 1 -0.3230 -3.1055 1.3522
33 1 0.9244 -4.7620 3.0700
34 1 4.4561 -0.9070 -3.9929
35 1 5.6842 -2.0368 -5.7911
36 1 5.6681 -4.4888 -5.9699
37 1 4.4262 -5.8388 -4.3534
38 1 3.4111 -6.6887 -2.1024
39 1 2.4391 -6.1452 -0.7139
40 1 1.1266 -7.3590 -2.2978
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001577706690.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:24
Heat of formation + Delta-G solvation = 53.859983 kcal
Electronic energy + Delta-G solvation = -30020.835696 eV
Core-core repulsion = 25804.999891 eV
Total energy + Delta-G solvation = -4215.835806 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.116 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.72357 -42.00849 -38.78608 -37.46549 -36.51727 -35.35467 -32.79994 -32.59353
-32.19308 -31.14339 -30.16414 -29.32660 -26.79473 -26.00549 -24.90730 -23.25697
-22.36019 -22.27458 -21.34313 -20.12841 -19.55363 -18.26453 -17.79352 -17.11358
-16.90769 -16.36082 -15.90200 -15.63330 -15.40036 -15.01064 -14.76698 -14.38180
-14.18925 -14.16106 -13.77224 -13.72231 -13.27779 -13.19107 -12.89005 -12.55839
-11.97492 -11.89976 -11.85040 -11.73562 -11.38347 -11.32694 -11.14683 -11.06099
-10.68969 -10.67192 -10.32817 -10.05050 -9.88998 -9.70796 -9.49645 -9.06944
-8.63651 -8.34634 -8.07072 -7.76795 -6.80225 -4.47440 0.98467 1.61015
2.06365 2.23507 2.87956 2.98355 2.99356 3.04572 3.14151 3.31952
3.76486 3.91457 3.92060 4.28626 4.59016 4.73450 4.95202 5.01760
5.09818 5.13029 5.31871 5.40434 5.50096 5.59706 5.62796 5.67378
5.74579 5.83907 5.94035 6.02048 6.20315 6.35404 6.51167 6.51512
6.61854 6.64221 6.68292 6.71911 6.87752 7.14517 7.34811 7.39370
7.54314 7.98313 7.99962 8.63455 8.93013 8.96670 9.38162 10.21752
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.010260 B = 0.004898 C = 0.003745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2728.416908 B = 5715.446078 C = 7474.305062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.849 5.849
2 C 0.050 3.950
3 Si 0.912 3.088
4 H -0.269 1.269
5 H -0.277 1.277
6 H -0.264 1.264
7 C -0.339 4.339
8 H 0.102 0.898
9 N -0.412 5.412
10 C 0.176 3.824
11 C 0.003 3.997
12 C -0.045 4.045
13 N -0.278 5.278
14 N -0.102 5.102
15 N -0.380 5.380
16 H 0.446 0.554
17 C 0.535 3.465
18 O -0.564 6.564
19 C 0.067 3.933
20 O -0.143 6.143
21 C 0.047 3.953
22 C -0.104 4.104
23 C -0.103 4.103
24 C -0.143 4.143
25 C -0.070 4.070
26 C -0.118 4.118
27 C -0.152 4.152
28 C 0.154 3.846
29 O -0.562 6.562
30 H 0.279 0.721
31 H 0.125 0.875
32 H 0.095 0.905
33 H 0.188 0.812
34 H 0.130 0.870
35 H 0.129 0.871
36 H 0.124 0.876
37 H 0.122 0.878
38 H 0.043 0.957
39 H 0.076 0.924
40 H 0.373 0.627
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.017 -3.226 -5.684 8.239
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.484 5.484
2 C -0.159 4.159
3 Si 0.737 3.263
4 H -0.194 1.194
5 H -0.202 1.202
6 H -0.189 1.189
7 C -0.467 4.467
8 H 0.120 0.880
9 N -0.129 5.129
10 C 0.051 3.949
11 C -0.132 4.132
12 C -0.203 4.203
13 N -0.146 5.146
14 N -0.082 5.082
15 N -0.101 5.101
16 H 0.291 0.709
17 C 0.324 3.676
18 O -0.449 6.449
19 C 0.015 3.985
20 O -0.041 6.041
21 C -0.002 4.002
22 C -0.123 4.123
23 C -0.121 4.121
24 C -0.162 4.162
25 C -0.088 4.088
26 C -0.120 4.120
27 C -0.156 4.156
28 C 0.077 3.923
29 O -0.367 6.367
30 H 0.089 0.911
31 H 0.142 0.858
32 H 0.113 0.887
33 H 0.205 0.795
34 H 0.148 0.852
35 H 0.147 0.853
36 H 0.142 0.858
37 H 0.140 0.860
38 H 0.061 0.939
39 H 0.094 0.906
40 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges 5.389 -2.669 -4.161 7.313
hybrid contribution -0.105 0.889 -1.269 1.553
sum 5.284 -1.780 -5.430 7.783
Atomic orbital electron populations
1.69759 1.06289 1.29006 1.43374 1.25514 0.95215 1.00199 0.94977
0.86133 0.79815 0.80742 0.79624 1.19430 1.20191 1.18869 1.19682
0.96418 0.83804 1.46758 0.88019 1.43337 1.38085 1.07172 1.24299
1.20070 0.90170 1.06255 0.78386 1.23126 1.02018 0.89919 0.98151
1.23413 1.03637 0.99039 0.94239 1.74971 1.13941 1.06504 1.19156
1.78127 1.19408 1.01430 1.09282 1.45041 1.35820 1.12527 1.16680
0.70878 1.17129 0.83212 0.85363 0.81923 1.90712 1.54621 1.31732
1.67815 1.22223 0.96843 0.83424 0.96011 1.84690 1.52899 1.32437
1.34113 1.20005 0.96113 0.93306 0.90738 1.19964 0.98760 0.99775
0.93785 1.20844 0.99260 0.94597 0.97437 1.20649 1.01574 0.93874
1.00059 1.20244 0.95824 0.99668 0.93086 1.19756 1.01560 0.93127
0.97507 1.20778 1.02932 0.95012 0.96879 1.20242 0.86106 0.88865
0.97081 1.86572 1.44123 1.33617 1.72365 0.91063 0.85801 0.88657
0.79515 0.85158 0.85270 0.85825 0.86011 0.93880 0.90628 0.78062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -19.43 11.41 55.50 0.63 -18.79 16
2 C 0.05 1.09 5.01 -17.45 -0.09 1.00 16
3 Si 0.91 17.30 29.60 -169.99 -5.03 12.27 16
4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16
5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16
6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16
7 C -0.34 -7.76 7.71 -15.03 -0.12 -7.87 16
8 H 0.10 2.39 6.36 -52.49 -0.33 2.06 16
9 N -0.41 -9.29 2.49 -117.54 -0.29 -9.58 16
10 C 0.18 3.58 5.52 -5.19 -0.03 3.55 16
11 C 0.00 0.06 6.89 -82.09 -0.57 -0.50 16
12 C -0.05 -0.86 11.99 -17.74 -0.21 -1.07 16
13 N -0.28 -5.55 12.41 30.24 0.38 -5.18 16
14 N -0.10 -1.96 13.38 60.35 0.81 -1.15 16
15 N -0.38 -6.77 6.98 33.54 0.23 -6.54 16
16 H 0.45 6.89 8.96 -190.40 -1.71 5.18 16
17 C 0.53 12.38 7.59 -12.80 -0.10 12.28 16
18 O -0.56 -13.12 14.34 5.18 0.07 -13.04 16
19 C 0.07 1.48 6.73 -36.94 -0.25 1.24 16
20 O -0.14 -3.11 7.59 2.71 0.02 -3.09 16
21 C 0.05 0.90 7.41 -38.35 -0.28 0.61 16
22 C -0.10 -1.60 10.07 -39.45 -0.40 -2.00 16
23 C -0.10 -1.30 10.01 -39.51 -0.40 -1.69 16
24 C -0.14 -1.79 9.98 -39.95 -0.40 -2.19 16
25 C -0.07 -1.03 10.06 -39.61 -0.40 -1.43 16
26 C -0.12 -2.17 6.37 -105.19 -0.67 -2.84 16
27 C -0.15 -3.04 6.02 -102.24 -0.62 -3.65 16
28 C 0.15 2.64 6.91 36.00 0.25 2.89 16
29 O -0.56 -9.55 13.64 -35.23 -0.48 -10.03 16
30 H 0.28 6.02 8.31 -40.82 -0.34 5.68 16
31 H 0.12 2.58 5.53 -51.93 -0.29 2.29 16
32 H 0.10 1.92 7.50 -51.93 -0.39 1.53 16
33 H 0.19 3.25 8.06 -52.48 -0.42 2.83 16
34 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16
35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16
36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16
37 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16
38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16
39 H 0.08 1.36 6.53 -51.93 -0.34 1.02 16
40 H 0.37 4.22 9.12 45.56 0.42 4.64 16
LS Contribution 352.15 15.07 5.31 5.31
Total: -1.00 -29.37 352.15 -6.93 -36.30
By element:
Atomic # 1 Polarization: 19.51 SS G_CDS: -4.31 Total: 15.20 kcal
Atomic # 6 Polarization: 2.60 SS G_CDS: -4.27 Total: -1.67 kcal
Atomic # 7 Polarization: -43.00 SS G_CDS: 1.76 Total: -41.24 kcal
Atomic # 8 Polarization: -25.78 SS G_CDS: -0.39 Total: -26.17 kcal
Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -29.37 -6.93 -36.30 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001577706690.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.163 kcal
(2) G-P(sol) polarization free energy of solvation -29.371 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.860 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds