Wall clock time and date at job start Sat Apr 11 2020 06:29:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31351 * 1
3 3 Si 1.86806 * 119.99849 * 2 1
4 4 H 1.48494 * 109.47144 * 269.99339 * 3 2 1
5 5 H 1.48504 * 109.47042 * 29.99860 * 3 2 1
6 6 H 1.48503 * 109.46958 * 149.99454 * 3 2 1
7 7 C 1.39074 * 120.00361 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00135 * 161.17980 * 7 2 1
9 9 N 1.36786 * 119.99520 * 341.18172 * 7 2 1
10 10 C 1.46502 * 120.00410 * 320.83756 * 9 7 2
11 11 C 1.50703 * 109.47311 * 270.00398 * 10 9 7
12 12 C 1.35346 * 126.91174 * 264.68424 * 11 10 9
13 13 N 1.33774 * 106.49531 * 179.90538 * 12 11 10
14 14 N 1.28628 * 108.88500 * 0.36620 * 13 12 11
15 15 N 1.28718 * 110.17956 * 359.76916 * 14 13 12
16 16 H 0.97002 * 125.86869 * 180.02562 * 15 14 13
17 17 C 1.34773 * 119.99898 * 140.83990 * 9 7 2
18 18 O 1.21715 * 120.00490 * 174.67306 * 17 9 7
19 19 C 1.46811 * 120.00216 * 354.95149 * 17 9 7
20 20 O 1.34950 * 125.13933 * 353.76239 * 19 17 9
21 21 C 1.34736 * 110.86185 * 179.97438 * 20 19 17
22 22 C 1.39005 * 133.22781 * 179.97438 * 21 20 19
23 23 C 1.37823 * 119.85838 * 180.02562 * 22 21 20
24 24 C 1.38828 * 120.75016 * 0.02562 * 23 22 21
25 25 C 1.36624 * 120.44002 * 359.97438 * 24 23 22
26 26 C 1.39726 * 119.70782 * 359.96097 * 25 24 23
27 27 C 1.35955 * 125.14493 * 173.46142 * 19 17 9
28 28 C 1.50691 * 126.97004 * 0.02562 * 27 19 17
29 29 O 1.42898 * 109.47421 * 90.02154 * 28 27 19
30 30 H 0.96997 * 119.99993 * 4.95816 * 1 2 3
31 31 H 1.09007 * 109.46600 * 30.00183 * 10 9 7
32 32 H 1.08997 * 109.47030 * 150.00067 * 10 9 7
33 33 H 1.08005 * 126.75153 * 0.03589 * 12 11 10
34 34 H 1.07999 * 120.07071 * 0.02562 * 22 21 20
35 35 H 1.08000 * 119.62470 * 180.02562 * 23 22 21
36 36 H 1.07999 * 119.77968 * 179.97438 * 24 23 22
37 37 H 1.08004 * 120.14551 * 179.97438 * 25 24 23
38 38 H 1.08996 * 109.47950 * 210.02891 * 28 27 19
39 39 H 1.09003 * 109.47127 * 330.02561 * 28 27 19
40 40 H 0.96699 * 114.00749 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3135 0.0000 0.0000
3 14 2.2475 1.6178 0.0000
4 1 2.4951 2.0464 -1.4000
5 1 1.4449 2.6527 0.7000
6 1 3.5450 1.4403 0.7002
7 6 2.0090 -1.2044 0.0005
8 1 3.0456 -1.2295 -0.3012
9 7 1.3798 -2.3571 0.3832
10 6 0.4376 -2.3399 1.5049
11 6 1.1785 -2.6164 2.7877
12 6 1.3203 -3.8137 3.4026
13 7 2.0496 -3.5921 4.5020
14 7 2.3336 -2.3393 4.5676
15 7 1.8308 -1.7166 3.5595
16 1 1.9068 -0.7658 3.3832
17 6 1.6268 -3.5089 -0.2717
18 8 1.1433 -4.5520 0.1279
19 6 2.4842 -3.5064 -1.4634
20 8 2.9794 -2.4028 -2.0618
21 6 3.7298 -2.7326 -3.1311
22 6 4.4424 -1.9847 -4.0612
23 6 5.1315 -2.6215 -5.0708
24 6 5.1231 -4.0061 -5.1723
25 6 4.4298 -4.7620 -4.2698
26 6 3.7258 -4.1360 -3.2379
27 6 2.9041 -4.6158 -2.1277
28 6 2.5854 -6.0494 -1.7898
29 8 1.3926 -6.4453 -2.4697
30 1 -0.4850 0.8369 -0.0726
31 1 -0.0388 -1.3612 1.5641
32 1 -0.3230 -3.1055 1.3522
33 1 0.9244 -4.7620 3.0700
34 1 4.4561 -0.9070 -3.9929
35 1 5.6842 -2.0368 -5.7911
36 1 5.6681 -4.4888 -5.9699
37 1 4.4262 -5.8388 -4.3534
38 1 3.4111 -6.6887 -2.1024
39 1 2.4391 -6.1452 -0.7139
40 1 1.1266 -7.3590 -2.2978
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001577706690.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:23
Heat of formation + Delta-G solvation = 33.139064 kcal
Electronic energy + Delta-G solvation = -30021.734223 eV
Core-core repulsion = 25804.999891 eV
Total energy + Delta-G solvation = -4216.734332 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.116 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-44.26079 -43.40121 -40.42927 -38.68150 -37.87981 -37.01309 -34.35487 -34.01093
-33.80536 -32.73138 -31.34484 -30.64026 -28.33091 -27.56324 -26.47533 -24.60806
-23.88324 -23.53720 -22.85103 -21.59244 -21.04312 -19.84343 -19.30393 -18.44133
-18.32058 -17.72911 -17.44121 -17.05486 -16.89569 -16.54649 -16.36945 -15.91164
-15.61393 -15.39980 -15.24665 -14.99031 -14.75331 -14.52422 -14.50621 -13.87039
-13.50048 -13.45868 -13.16441 -12.95557 -12.88332 -12.83399 -12.67469 -12.57560
-12.17889 -11.92738 -11.83418 -11.58227 -11.42996 -11.07895 -11.02832 -10.63074
-10.19787 -9.75622 -9.56544 -9.13446 -8.49551 -6.23053 -0.34362 0.42876
0.52602 0.85290 1.35586 1.41381 1.48120 1.51950 1.73439 1.85737
2.18145 2.26040 2.73580 2.77159 2.92035 3.48097 3.58075 3.60986
3.81635 3.91510 3.98805 4.12378 4.15208 4.22383 4.36962 4.39790
4.42529 4.48715 4.60217 4.75815 4.83136 4.94699 5.01206 5.17313
5.19388 5.38041 5.41174 5.44267 5.50902 5.68511 5.75649 5.93885
6.17958 6.27916 6.90807 6.95361 7.23019 7.40692 7.66930 8.53257
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.010260 B = 0.004898 C = 0.003745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2728.416908 B = 5715.446078 C = 7474.305062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.874 5.874
2 C 0.023 3.977
3 Si 0.969 3.031
4 H -0.275 1.275
5 H -0.267 1.267
6 H -0.261 1.261
7 C -0.350 4.350
8 H 0.089 0.911
9 N -0.420 5.420
10 C 0.184 3.816
11 C 0.000 4.000
12 C -0.045 4.045
13 N -0.293 5.293
14 N -0.103 5.103
15 N -0.368 5.368
16 H 0.456 0.544
17 C 0.524 3.476
18 O -0.579 6.579
19 C 0.015 3.985
20 O -0.169 6.169
21 C 0.016 3.984
22 C -0.125 4.125
23 C -0.080 4.080
24 C -0.131 4.131
25 C -0.074 4.074
26 C -0.145 4.145
27 C -0.147 4.147
28 C 0.157 3.843
29 O -0.581 6.581
30 H 0.282 0.718
31 H 0.119 0.881
32 H 0.091 0.909
33 H 0.199 0.801
34 H 0.140 0.860
35 H 0.174 0.826
36 H 0.169 0.831
37 H 0.146 0.854
38 H 0.079 0.921
39 H 0.059 0.941
40 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.046 -3.376 -7.933 11.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.510 5.510
2 C -0.183 4.183
3 Si 0.791 3.209
4 H -0.200 1.200
5 H -0.191 1.191
6 H -0.186 1.186
7 C -0.477 4.477
8 H 0.106 0.894
9 N -0.137 5.137
10 C 0.059 3.941
11 C -0.136 4.136
12 C -0.203 4.203
13 N -0.160 5.160
14 N -0.084 5.084
15 N -0.090 5.090
16 H 0.303 0.697
17 C 0.313 3.687
18 O -0.465 6.465
19 C -0.036 4.036
20 O -0.069 6.069
21 C -0.032 4.032
22 C -0.144 4.144
23 C -0.098 4.098
24 C -0.149 4.149
25 C -0.092 4.092
26 C -0.146 4.146
27 C -0.151 4.151
28 C 0.080 3.920
29 O -0.390 6.390
30 H 0.093 0.907
31 H 0.137 0.863
32 H 0.109 0.891
33 H 0.216 0.784
34 H 0.158 0.842
35 H 0.191 0.809
36 H 0.187 0.813
37 H 0.163 0.837
38 H 0.097 0.903
39 H 0.078 0.922
40 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges 7.414 -2.830 -6.398 10.194
hybrid contribution -0.629 0.845 -0.788 1.315
sum 6.785 -1.985 -7.186 10.081
Atomic orbital electron populations
1.69824 1.07281 1.29810 1.44073 1.26101 0.95739 1.02268 0.94238
0.85295 0.78912 0.77511 0.79153 1.20050 1.19133 1.18553 1.19644
0.96029 0.84325 1.47690 0.89354 1.43473 1.38323 1.07054 1.24828
1.19936 0.89919 1.05704 0.78507 1.22929 1.02467 0.90280 0.97896
1.23632 1.03205 0.99531 0.93889 1.74965 1.14573 1.06831 1.19648
1.78081 1.19366 1.01409 1.09505 1.45015 1.34984 1.12962 1.16043
0.69685 1.17447 0.83432 0.85424 0.82363 1.90659 1.55406 1.31988
1.68478 1.22141 0.99581 0.84586 0.97292 1.84566 1.54050 1.32791
1.35506 1.20664 0.96925 0.94694 0.90941 1.20374 0.99323 1.00522
0.94159 1.21442 0.96909 0.95270 0.96186 1.21219 0.99983 0.93794
0.99870 1.20653 0.95113 1.01226 0.92182 1.20003 1.02967 0.93036
0.98587 1.21339 1.01529 0.95695 0.96499 1.20253 0.87338 0.88154
0.96268 1.86501 1.44260 1.35899 1.72306 0.90736 0.86303 0.89123
0.78401 0.84238 0.80896 0.81320 0.83672 0.90312 0.92241 0.75344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -40.93 11.41 21.68 0.25 -40.68 16
2 C 0.02 1.02 5.01 84.97 0.43 1.45 16
3 Si 0.97 35.76 29.60 68.60 2.03 37.80 16
4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16
5 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16
6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16
7 C -0.35 -16.66 7.71 84.12 0.65 -16.01 16
8 H 0.09 4.40 6.36 -2.91 -0.02 4.38 16
9 N -0.42 -19.85 2.49 -643.99 -1.60 -21.45 16
10 C 0.18 7.79 5.52 85.63 0.47 8.26 16
11 C 0.00 0.00 6.89 41.36 0.28 0.29 16
12 C -0.04 -1.72 11.99 83.73 1.00 -0.71 16
13 N -0.29 -11.71 12.41 -58.25 -0.72 -12.44 16
14 N -0.10 -3.95 13.38 37.02 0.50 -3.46 16
15 N -0.37 -13.19 6.98 -47.79 -0.33 -13.52 16
16 H 0.46 14.12 8.96 -219.96 -1.97 12.14 16
17 C 0.52 25.57 7.59 86.49 0.66 26.22 16
18 O -0.58 -28.25 14.34 -4.40 -0.06 -28.31 16
19 C 0.02 0.70 6.73 23.98 0.16 0.86 16
20 O -0.17 -7.77 7.59 -13.23 -0.10 -7.87 16
21 C 0.02 0.61 7.41 23.07 0.17 0.78 16
22 C -0.13 -3.67 10.07 22.36 0.23 -3.45 16
23 C -0.08 -1.67 10.01 22.31 0.22 -1.45 16
24 C -0.13 -2.62 9.98 22.03 0.22 -2.40 16
25 C -0.07 -1.94 10.06 22.25 0.22 -1.72 16
26 C -0.15 -5.23 6.37 -20.23 -0.13 -5.36 16
27 C -0.15 -5.99 6.02 -18.32 -0.11 -6.10 16
28 C 0.16 5.36 6.91 71.23 0.49 5.85 16
29 O -0.58 -19.52 13.64 -148.98 -2.03 -21.55 16
30 H 0.28 12.37 8.31 -92.71 -0.77 11.60 16
31 H 0.12 5.13 5.53 -2.38 -0.01 5.12 16
32 H 0.09 3.84 7.50 -2.39 -0.02 3.83 16
33 H 0.20 7.02 8.06 -2.91 -0.02 7.00 16
34 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16
35 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16
36 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16
37 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16
38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
39 H 0.06 2.20 6.53 -2.39 -0.02 2.19 16
40 H 0.40 8.59 9.12 -74.06 -0.68 7.91 16
Total: -1.00 -66.48 352.15 1.39 -65.09
By element:
Atomic # 1 Polarization: 41.36 SS G_CDS: -1.50 Total: 39.86 kcal
Atomic # 6 Polarization: 1.56 SS G_CDS: 4.97 Total: 6.53 kcal
Atomic # 7 Polarization: -89.63 SS G_CDS: -1.91 Total: -91.54 kcal
Atomic # 8 Polarization: -55.54 SS G_CDS: -2.20 Total: -57.74 kcal
Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.80 kcal
Total: -66.48 1.39 -65.09 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001577706690.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.230 kcal
(2) G-P(sol) polarization free energy of solvation -66.482 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.748 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds