Wall clock time and date at job start Sat Apr 11 2020 06:29:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36942 * 120.00041 * 2 1
4 4 H 1.08000 * 119.99960 * 154.11655 * 3 2 1
5 5 C 1.38803 * 119.99957 * 333.85250 * 3 2 1
6 6 N 1.31626 * 120.00211 * 352.56536 * 5 3 2
7 7 Si 1.86802 * 120.00123 * 172.57077 * 5 3 2
8 8 H 1.48505 * 109.46891 * 4.99663 * 7 5 3
9 9 H 1.48502 * 109.47146 * 124.99576 * 7 5 3
10 10 H 1.48496 * 109.47343 * 244.99881 * 7 5 3
11 11 C 1.46503 * 120.00067 * 180.02562 * 2 1 3
12 12 C 1.52998 * 109.47118 * 264.08955 * 11 2 1
13 13 H 1.08997 * 109.87290 * 306.58670 * 12 11 2
14 14 C 1.54321 * 109.88205 * 67.60279 * 12 11 2
15 15 C 1.55401 * 102.83158 * 141.51786 * 14 12 11
16 16 C 1.54916 * 101.66089 * 324.66430 * 15 14 12
17 17 N 1.47017 * 109.88289 * 185.57014 * 12 11 2
18 18 C 1.34777 * 125.64689 * 61.60606 * 17 12 11
19 19 O 1.21277 * 120.00445 * 4.54582 * 18 17 12
20 20 C 1.50702 * 119.99697 * 184.54133 * 18 17 12
21 21 C 1.50703 * 109.47110 * 185.00788 * 20 18 17
22 22 C 1.33349 * 125.18556 * 94.65956 * 21 20 18
23 23 C 1.38476 * 114.92999 * 179.79519 * 22 21 20
24 24 C 1.33501 * 114.88022 * 0.50495 * 23 22 21
25 25 Cl 1.73601 * 125.20537 * 179.71273 * 24 23 22
26 26 S 1.75881 * 109.58599 * 359.73051 * 24 23 22
27 27 H 1.08996 * 109.47294 * 93.61867 * 1 2 3
28 28 H 1.08998 * 109.46933 * 213.62030 * 1 2 3
29 29 H 1.09002 * 109.46836 * 333.61644 * 1 2 3
30 30 H 0.96999 * 119.99762 * 180.02562 * 6 5 3
31 31 H 1.08996 * 109.46645 * 24.09272 * 11 2 1
32 32 H 1.09004 * 109.46782 * 144.08862 * 11 2 1
33 33 H 1.09001 * 110.72297 * 259.97662 * 14 12 11
34 34 H 1.09002 * 110.71849 * 23.24262 * 14 12 11
35 35 H 1.08995 * 111.04069 * 206.53033 * 15 14 12
36 36 H 1.08997 * 110.88765 * 82.73151 * 15 14 12
37 37 H 1.09002 * 110.36232 * 278.08154 * 16 15 14
38 38 H 1.09005 * 110.45664 * 155.81003 * 16 15 14
39 39 H 1.08994 * 109.47711 * 305.01440 * 20 18 17
40 40 H 1.09004 * 109.47103 * 65.01344 * 20 18 17
41 41 H 1.07998 * 122.53495 * 359.97438 * 22 21 20
42 42 H 1.08002 * 122.55872 * 180.23441 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1484 1.2328 0.4083
5 6 1.5622 2.3265 -0.5297
6 7 0.4111 2.2408 -1.1624
7 14 2.4052 3.9832 -0.3450
8 1 3.7328 3.7946 0.2932
9 1 2.5828 4.6003 -1.6840
10 1 1.5702 4.8717 0.5027
11 6 2.1975 -1.2687 -0.0006
12 6 2.5811 -1.6368 1.4341
13 1 3.1132 -0.8073 1.8997
14 6 1.3127 -1.9695 2.2476
15 6 1.7734 -3.1601 3.1337
16 6 2.7403 -3.9048 2.1795
17 7 3.4299 -2.8372 1.4324
18 6 4.6379 -2.9442 0.8445
19 8 5.1472 -1.9743 0.3241
20 6 5.3559 -4.2692 0.8338
21 6 6.7257 -4.0934 0.2305
22 6 7.8468 -3.8776 0.9195
23 6 8.9904 -3.7516 0.1489
24 6 8.7947 -3.8548 -1.1677
25 17 10.0347 -3.7320 -2.3764
26 16 7.0884 -4.1337 -1.4900
27 1 -0.3634 -0.0649 -1.0256
28 1 -0.3633 -0.8558 0.5690
29 1 -0.3633 0.9207 0.4567
30 1 0.0008 3.0378 -1.5329
31 1 1.5667 -2.0522 -0.4204
32 1 3.1000 -1.1669 -0.6033
33 1 1.0152 -1.1203 2.8628
34 1 0.4997 -2.2724 1.5877
35 1 0.9298 -3.7936 3.4074
36 1 2.2970 -2.8044 4.0210
37 1 2.1814 -4.5452 1.4972
38 1 3.4589 -4.4942 2.7491
39 1 5.4531 -4.6381 1.8547
40 1 4.7872 -4.9858 0.2411
41 1 7.8622 -3.8094 1.9972
42 1 9.9655 -3.5785 0.5798
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725043825.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:06
Heat of formation + Delta-G solvation = 22.950544 kcal
Electronic energy + Delta-G solvation = -25252.407205 eV
Core-core repulsion = 21579.091430 eV
Total energy + Delta-G solvation = -3673.315775 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.091 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-40.03943 -38.26891 -37.29058 -36.64033 -35.24459 -32.53130 -31.41034 -31.15450
-29.05715 -27.07390 -26.00798 -25.12726 -23.81977 -22.61818 -21.11380 -20.61211
-19.61882 -18.74007 -17.53622 -17.02877 -16.58561 -16.16397 -15.79985 -15.06409
-14.69782 -14.47276 -13.84840 -13.68508 -13.59458 -13.40869 -13.26870 -13.09150
-12.94267 -12.85539 -12.62331 -12.05568 -11.93544 -11.78263 -11.56759 -11.27957
-11.13063 -11.01533 -10.84559 -10.80887 -10.79864 -10.62511 -10.33558 -10.08405
-9.85914 -9.75397 -9.52098 -8.67682 -8.60188 -8.54093 -8.32083 -6.60574
-5.67131 -3.14339 0.64965 0.99476 1.70837 2.09330 2.44593 2.82618
3.20919 3.43106 3.50579 3.54587 4.41359 4.54972 4.60112 4.66995
4.87397 4.99627 5.11125 5.12702 5.20251 5.35123 5.43773 5.48698
5.56416 5.66143 5.75556 5.76336 5.86535 5.91506 6.03234 6.17477
6.23861 6.25317 6.49464 6.57586 6.77345 6.87386 7.06704 7.43446
7.74755 7.78067 7.91755 8.39935 8.51618 9.33330 9.93927 10.43545
11.39454
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.010602 B = 0.003220 C = 0.002639
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2640.323855 B = 8694.811702 C =10608.129342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.163 3.837
2 N -0.596 5.596
3 C -0.248 4.248
4 H 0.068 0.932
5 C 0.002 3.998
6 N -0.911 5.911
7 Si 0.903 3.097
8 H -0.277 1.277
9 H -0.290 1.290
10 H -0.290 1.290
11 C 0.147 3.853
12 C 0.116 3.884
13 H 0.075 0.925
14 C -0.115 4.115
15 C -0.136 4.136
16 C 0.099 3.901
17 N -0.613 5.613
18 C 0.521 3.479
19 O -0.515 6.515
20 C -0.068 4.068
21 C -0.148 4.148
22 C -0.127 4.127
23 C -0.116 4.116
24 C -0.154 4.154
25 Cl -0.020 7.020
26 S 0.175 5.825
27 H 0.016 0.984
28 H -0.006 1.006
29 H 0.057 0.943
30 H 0.251 0.749
31 H 0.035 0.965
32 H 0.055 0.945
33 H 0.080 0.920
34 H 0.075 0.925
35 H 0.079 0.921
36 H 0.071 0.929
37 H 0.067 0.933
38 H 0.070 0.930
39 H 0.110 0.890
40 H 0.105 0.895
41 H 0.145 0.855
42 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.558 -19.950 6.845 23.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.319 5.319
3 C -0.378 4.378
4 H 0.086 0.914
5 C -0.195 4.195
6 N -0.557 5.557
7 Si 0.733 3.267
8 H -0.202 1.202
9 H -0.217 1.217
10 H -0.217 1.217
11 C 0.018 3.982
12 C 0.011 3.989
13 H 0.093 0.907
14 C -0.153 4.153
15 C -0.174 4.174
16 C -0.025 4.025
17 N -0.349 5.349
18 C 0.308 3.692
19 O -0.390 6.390
20 C -0.110 4.110
21 C -0.267 4.267
22 C -0.157 4.157
23 C -0.149 4.149
24 C -0.298 4.298
25 Cl 0.008 6.992
26 S 0.439 5.561
27 H 0.034 0.966
28 H 0.012 0.988
29 H 0.076 0.924
30 H 0.061 0.939
31 H 0.053 0.947
32 H 0.073 0.927
33 H 0.098 0.902
34 H 0.094 0.906
35 H 0.097 0.903
36 H 0.090 0.910
37 H 0.085 0.915
38 H 0.088 0.912
39 H 0.128 0.872
40 H 0.123 0.877
41 H 0.163 0.837
42 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 10.071 -19.462 4.978 22.471
hybrid contribution 1.338 1.216 1.218 2.180
sum 11.409 -18.246 6.196 22.393
Atomic orbital electron populations
1.20846 0.82666 0.97030 0.97632 1.43793 1.01678 1.00412 1.86017
1.19271 0.99754 0.86098 1.32669 0.91401 1.25083 0.97681 0.98752
0.98006 1.70060 1.18202 1.27594 1.39848 0.86192 0.79039 0.84180
0.77252 1.20240 1.21697 1.21702 1.20978 0.96395 0.88614 0.92211
1.22594 0.89578 0.85988 1.00739 0.90656 1.22682 0.97166 0.97658
0.97779 1.22841 0.98753 0.97883 0.97889 1.22315 0.95355 0.90659
0.94149 1.48658 1.17666 1.14851 1.53719 1.19930 0.80207 0.90062
0.79028 1.90807 1.64974 1.38907 1.44308 1.20204 0.90818 0.97042
1.02942 1.23931 0.98241 1.08337 0.96189 1.19867 0.90674 1.03822
1.01327 1.20099 1.00778 1.02988 0.90995 1.25231 0.94908 1.15773
0.93906 1.98358 1.50298 1.96768 1.53762 1.84451 0.97241 1.69500
1.04917 0.96615 0.98758 0.92443 0.93896 0.94708 0.92701 0.90160
0.90598 0.90256 0.90986 0.91480 0.91156 0.87172 0.87667 0.83687
0.83553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 32.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.00 8.72 59.84 0.52 4.52 16
2 N -0.60 -15.31 2.80 -181.13 -0.51 -15.82 16
3 C -0.25 -7.11 9.63 -15.06 -0.15 -7.25 16
4 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16
5 C 0.00 0.07 5.15 -17.43 -0.09 -0.02 16
6 N -0.91 -27.19 10.66 55.49 0.59 -26.60 16
7 Si 0.90 22.80 29.56 -169.99 -5.02 17.78 16
8 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
9 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16
10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
11 C 0.15 3.20 5.13 -4.04 -0.02 3.18 16
12 C 0.12 2.07 3.05 -66.96 -0.20 1.87 16
13 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16
14 C -0.11 -1.67 5.67 -24.76 -0.14 -1.81 16
15 C -0.14 -1.38 7.09 -24.45 -0.17 -1.55 16
16 C 0.10 0.97 6.66 -2.53 -0.02 0.95 16
17 N -0.61 -8.87 3.06 -163.02 -0.50 -9.37 16
18 C 0.52 7.98 7.56 -10.98 -0.08 7.90 16
19 O -0.52 -10.51 15.19 5.56 0.08 -10.42 16
20 C -0.07 -0.70 5.37 -29.03 -0.16 -0.86 16
21 C -0.15 -1.74 5.01 -36.01 -0.18 -1.92 16
22 C -0.13 -1.38 10.05 -41.20 -0.41 -1.80 16
23 C -0.12 -1.27 10.13 -41.15 -0.42 -1.68 16
24 C -0.15 -1.84 7.10 29.07 0.21 -1.63 16
25 Cl -0.02 -0.22 29.29 -51.86 -1.52 -1.74 16
26 S 0.18 2.16 23.33 -107.50 -2.51 -0.34 16
27 H 0.02 0.41 7.78 -51.93 -0.40 0.01 16
28 H -0.01 -0.12 6.14 -51.93 -0.32 -0.44 16
29 H 0.06 1.53 6.81 -51.93 -0.35 1.18 16
30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
31 H 0.03 0.71 7.90 -51.93 -0.41 0.30 16
32 H 0.05 1.36 6.80 -51.93 -0.35 1.00 16
33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.08 1.13 6.33 -51.93 -0.33 0.80 16
35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.07 0.50 7.35 -51.93 -0.38 0.12 16
39 H 0.11 0.80 7.54 -51.93 -0.39 0.41 16
40 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16
41 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16
42 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16
LS Contribution 369.27 15.07 5.56 5.56
Total: -1.00 -33.74 369.27 -11.00 -44.74
By element:
Atomic # 1 Polarization: 2.19 SS G_CDS: -5.87 Total: -3.68 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: -1.31 Total: -0.11 kcal
Atomic # 7 Polarization: -51.37 SS G_CDS: -0.41 Total: -51.78 kcal
Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.42 kcal
Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal
Atomic # 16 Polarization: 2.16 SS G_CDS: -2.51 Total: -0.34 kcal
Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.74 -11.00 -44.74 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725043825.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.694 kcal
(2) G-P(sol) polarization free energy of solvation -33.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds