Wall clock time and date at job start Sat Apr 11 2020 06:29:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36942 * 120.00041 * 2 1
4 4 H 1.08000 * 119.99960 * 154.11655 * 3 2 1
5 5 C 1.38803 * 119.99957 * 333.85250 * 3 2 1
6 6 N 1.31626 * 120.00211 * 352.56536 * 5 3 2
7 7 Si 1.86802 * 120.00123 * 172.57077 * 5 3 2
8 8 H 1.48505 * 109.46891 * 4.99663 * 7 5 3
9 9 H 1.48502 * 109.47146 * 124.99576 * 7 5 3
10 10 H 1.48496 * 109.47343 * 244.99881 * 7 5 3
11 11 C 1.46503 * 120.00067 * 180.02562 * 2 1 3
12 12 C 1.52998 * 109.47118 * 264.08955 * 11 2 1
13 13 H 1.08997 * 109.87290 * 306.58670 * 12 11 2
14 14 C 1.54321 * 109.88205 * 67.60279 * 12 11 2
15 15 C 1.55401 * 102.83158 * 141.51786 * 14 12 11
16 16 C 1.54916 * 101.66089 * 324.66430 * 15 14 12
17 17 N 1.47017 * 109.88289 * 185.57014 * 12 11 2
18 18 C 1.34777 * 125.64689 * 61.60606 * 17 12 11
19 19 O 1.21277 * 120.00445 * 4.54582 * 18 17 12
20 20 C 1.50702 * 119.99697 * 184.54133 * 18 17 12
21 21 C 1.50703 * 109.47110 * 185.00788 * 20 18 17
22 22 C 1.33349 * 125.18556 * 94.65956 * 21 20 18
23 23 C 1.38476 * 114.92999 * 179.79519 * 22 21 20
24 24 C 1.33501 * 114.88022 * 0.50495 * 23 22 21
25 25 Cl 1.73601 * 125.20537 * 179.71273 * 24 23 22
26 26 S 1.75881 * 109.58599 * 359.73051 * 24 23 22
27 27 H 1.08996 * 109.47294 * 93.61867 * 1 2 3
28 28 H 1.08998 * 109.46933 * 213.62030 * 1 2 3
29 29 H 1.09002 * 109.46836 * 333.61644 * 1 2 3
30 30 H 0.96999 * 119.99762 * 180.02562 * 6 5 3
31 31 H 1.08996 * 109.46645 * 24.09272 * 11 2 1
32 32 H 1.09004 * 109.46782 * 144.08862 * 11 2 1
33 33 H 1.09001 * 110.72297 * 259.97662 * 14 12 11
34 34 H 1.09002 * 110.71849 * 23.24262 * 14 12 11
35 35 H 1.08995 * 111.04069 * 206.53033 * 15 14 12
36 36 H 1.08997 * 110.88765 * 82.73151 * 15 14 12
37 37 H 1.09002 * 110.36232 * 278.08154 * 16 15 14
38 38 H 1.09005 * 110.45664 * 155.81003 * 16 15 14
39 39 H 1.08994 * 109.47711 * 305.01440 * 20 18 17
40 40 H 1.09004 * 109.47103 * 65.01344 * 20 18 17
41 41 H 1.07998 * 122.53495 * 359.97438 * 22 21 20
42 42 H 1.08002 * 122.55872 * 180.23441 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1484 1.2328 0.4083
5 6 1.5622 2.3265 -0.5297
6 7 0.4111 2.2408 -1.1624
7 14 2.4052 3.9832 -0.3450
8 1 3.7328 3.7946 0.2932
9 1 2.5828 4.6003 -1.6840
10 1 1.5702 4.8717 0.5027
11 6 2.1975 -1.2687 -0.0006
12 6 2.5811 -1.6368 1.4341
13 1 3.1132 -0.8073 1.8997
14 6 1.3127 -1.9695 2.2476
15 6 1.7734 -3.1601 3.1337
16 6 2.7403 -3.9048 2.1795
17 7 3.4299 -2.8372 1.4324
18 6 4.6379 -2.9442 0.8445
19 8 5.1472 -1.9743 0.3241
20 6 5.3559 -4.2692 0.8338
21 6 6.7257 -4.0934 0.2305
22 6 7.8468 -3.8776 0.9195
23 6 8.9904 -3.7516 0.1489
24 6 8.7947 -3.8548 -1.1677
25 17 10.0347 -3.7320 -2.3764
26 16 7.0884 -4.1337 -1.4900
27 1 -0.3634 -0.0649 -1.0256
28 1 -0.3633 -0.8558 0.5690
29 1 -0.3633 0.9207 0.4567
30 1 0.0008 3.0378 -1.5329
31 1 1.5667 -2.0522 -0.4204
32 1 3.1000 -1.1669 -0.6033
33 1 1.0152 -1.1203 2.8628
34 1 0.4997 -2.2724 1.5877
35 1 0.9298 -3.7936 3.4074
36 1 2.2970 -2.8044 4.0210
37 1 2.1814 -4.5452 1.4972
38 1 3.4589 -4.4942 2.7491
39 1 5.4531 -4.6381 1.8547
40 1 4.7872 -4.9858 0.2411
41 1 7.8622 -3.8094 1.9972
42 1 9.9655 -3.5785 0.5798
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001725043825.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:05
Heat of formation + Delta-G solvation = 3.000127 kcal
Electronic energy + Delta-G solvation = -25253.272320 eV
Core-core repulsion = 21579.091430 eV
Total energy + Delta-G solvation = -3674.180890 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 342.091 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.21595 -39.22528 -38.46473 -37.56113 -37.09424 -33.81808 -33.14981 -32.17103
-30.57823 -28.05557 -27.93722 -26.78141 -24.82785 -23.76516 -22.74838 -21.88072
-20.51565 -19.93309 -18.70573 -18.44406 -18.05591 -17.43040 -16.82421 -16.58486
-16.20431 -15.65268 -15.43482 -15.15082 -14.76950 -14.68879 -14.46893 -14.25822
-13.97160 -13.85362 -13.75934 -13.64855 -13.12977 -13.04626 -12.83052 -12.79246
-12.55141 -12.45165 -12.34269 -12.18339 -12.09391 -11.97305 -11.91196 -11.69327
-11.56915 -11.45354 -10.84002 -10.66073 -9.66183 -9.56767 -9.50552 -8.69342
-7.88621 -5.38255 -0.23471 0.12305 0.84274 1.21192 1.39280 1.41155
1.52079 1.58545 1.69223 2.13111 2.47887 3.26005 3.52148 3.63712
3.70943 3.83422 4.03924 4.08502 4.18781 4.33359 4.39105 4.44213
4.49957 4.55136 4.60522 4.79707 4.87447 4.93235 4.94687 5.03684
5.08268 5.09486 5.17697 5.21859 5.33055 5.36896 5.46306 5.55236
5.59298 5.70209 6.32354 6.67255 7.14320 7.26335 7.84193 8.26721
9.15340
Molecular weight = 342.09amu
Principal moments of inertia in cm(-1)
A = 0.010602 B = 0.003220 C = 0.002639
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2640.323855 B = 8694.811702 C =10608.129342
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.179 3.821
2 N -0.612 5.612
3 C -0.258 4.258
4 H 0.051 0.949
5 C -0.046 4.046
6 N -0.936 5.936
7 Si 0.965 3.035
8 H -0.277 1.277
9 H -0.290 1.290
10 H -0.280 1.280
11 C 0.153 3.847
12 C 0.127 3.873
13 H 0.031 0.969
14 C -0.113 4.113
15 C -0.121 4.121
16 C 0.093 3.907
17 N -0.614 5.614
18 C 0.513 3.487
19 O -0.580 6.580
20 C -0.056 4.056
21 C -0.156 4.156
22 C -0.127 4.127
23 C -0.116 4.116
24 C -0.167 4.167
25 Cl -0.018 7.018
26 S 0.131 5.869
27 H -0.011 1.011
28 H 0.037 0.963
29 H 0.031 0.969
30 H 0.250 0.750
31 H 0.049 0.951
32 H 0.015 0.985
33 H 0.065 0.935
34 H 0.075 0.925
35 H 0.113 0.887
36 H 0.076 0.924
37 H 0.087 0.913
38 H 0.112 0.888
39 H 0.154 0.846
40 H 0.130 0.870
41 H 0.171 0.829
42 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.709 -22.464 9.271 26.556
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 N -0.335 5.335
3 C -0.389 4.389
4 H 0.069 0.931
5 C -0.241 4.241
6 N -0.583 5.583
7 Si 0.793 3.207
8 H -0.202 1.202
9 H -0.217 1.217
10 H -0.206 1.206
11 C 0.025 3.975
12 C 0.021 3.979
13 H 0.050 0.950
14 C -0.151 4.151
15 C -0.159 4.159
16 C -0.028 4.028
17 N -0.348 5.348
18 C 0.302 3.698
19 O -0.459 6.459
20 C -0.097 4.097
21 C -0.275 4.275
22 C -0.157 4.157
23 C -0.148 4.148
24 C -0.310 4.310
25 Cl 0.011 6.989
26 S 0.394 5.606
27 H 0.008 0.992
28 H 0.055 0.945
29 H 0.050 0.950
30 H 0.059 0.941
31 H 0.067 0.933
32 H 0.033 0.967
33 H 0.084 0.916
34 H 0.094 0.906
35 H 0.131 0.869
36 H 0.095 0.905
37 H 0.106 0.894
38 H 0.130 0.870
39 H 0.172 0.828
40 H 0.148 0.852
41 H 0.189 0.811
42 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges 10.215 -22.045 7.438 25.410
hybrid contribution 1.337 1.964 0.458 2.420
sum 11.552 -20.081 7.895 24.475
Atomic orbital electron populations
1.20612 0.82027 0.97502 0.96404 1.43962 1.02261 1.00938 1.86387
1.19344 0.99356 0.87761 1.32422 0.93142 1.25768 0.98462 1.01831
0.98083 1.70201 1.19199 1.28251 1.40645 0.85247 0.78106 0.80274
0.77099 1.20209 1.21665 1.20590 1.20991 0.94438 0.87428 0.94604
1.22047 0.91449 0.86807 0.97632 0.95038 1.22585 0.95113 0.99403
0.97999 1.22855 0.99913 0.96032 0.97103 1.22719 0.96167 0.89546
0.94352 1.48745 1.17336 1.14847 1.53845 1.20919 0.80110 0.91201
0.77567 1.90785 1.66623 1.41546 1.46929 1.20286 0.89471 0.94106
1.05803 1.24175 0.99341 1.08779 0.95177 1.20233 0.90245 1.02598
1.02635 1.20445 1.01930 1.01791 0.90643 1.25351 0.94517 1.16685
0.94489 1.98353 1.49976 1.96803 1.53814 1.84543 0.98578 1.70430
1.07016 0.99234 0.94473 0.95016 0.94061 0.93253 0.96676 0.91604
0.90596 0.86912 0.90485 0.89438 0.86986 0.82846 0.85167 0.81128
0.81492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.95 8.72 127.77 1.11 10.06 16
2 N -0.61 -32.52 2.80 -726.96 -2.03 -34.55 16
3 C -0.26 -15.43 9.63 84.03 0.81 -14.62 16
4 H 0.05 3.13 7.84 -2.91 -0.02 3.11 16
5 C -0.05 -2.75 5.15 84.86 0.44 -2.32 16
6 N -0.94 -57.35 10.66 21.65 0.23 -57.12 16
7 Si 0.96 48.14 29.56 68.60 2.03 50.16 16
8 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16
9 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16
10 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16
11 C 0.15 6.87 5.13 86.38 0.44 7.31 16
12 C 0.13 4.55 3.05 45.34 0.14 4.69 16
13 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16
14 C -0.11 -3.08 5.67 31.87 0.18 -2.90 16
15 C -0.12 -1.93 7.09 32.07 0.23 -1.70 16
16 C 0.09 1.37 6.66 86.86 0.58 1.95 16
17 N -0.61 -16.60 3.06 -788.07 -2.42 -19.02 16
18 C 0.51 15.12 7.56 87.66 0.66 15.78 16
19 O -0.58 -24.43 15.19 -3.02 -0.05 -24.48 16
20 C -0.06 -0.96 5.37 29.10 0.16 -0.81 16
21 C -0.16 -3.40 5.01 24.58 0.12 -3.28 16
22 C -0.13 -2.48 10.05 21.22 0.21 -2.27 16
23 C -0.12 -2.35 10.13 21.25 0.22 -2.13 16
24 C -0.17 -3.91 7.10 66.75 0.47 -3.43 16
25 Cl -0.02 -0.39 29.29 -2.72 -0.08 -0.47 16
26 S 0.13 3.24 23.33 -56.49 -1.32 1.92 16
27 H -0.01 -0.59 7.78 -2.39 -0.02 -0.60 16
28 H 0.04 1.51 6.14 -2.39 -0.01 1.49 16
29 H 0.03 1.72 6.81 -2.39 -0.02 1.70 16
30 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
31 H 0.05 2.03 7.90 -2.39 -0.02 2.01 16
32 H 0.01 0.78 6.80 -2.38 -0.02 0.77 16
33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
34 H 0.08 2.07 6.33 -2.39 -0.02 2.05 16
35 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16
36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16
37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.11 0.82 7.35 -2.38 -0.02 0.80 16
39 H 0.15 1.34 7.54 -2.39 -0.02 1.32 16
40 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16
41 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16
42 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16
Total: -1.00 -79.90 369.27 3.17 -76.73
By element:
Atomic # 1 Polarization: -0.56 SS G_CDS: 1.03 Total: 0.46 kcal
Atomic # 6 Polarization: 0.58 SS G_CDS: 5.77 Total: 6.35 kcal
Atomic # 7 Polarization: -106.47 SS G_CDS: -4.22 Total: -110.69 kcal
Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal
Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.16 kcal
Atomic # 16 Polarization: 3.24 SS G_CDS: -1.32 Total: 1.92 kcal
Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal
Total: -79.90 3.17 -76.73 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725043825.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.733 kcal
(2) G-P(sol) polarization free energy of solvation -79.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.168 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.733 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.000 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds