Wall clock time and date at job start Sat Apr 11 2020 06:30:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35982 * 126.35984 * 2 1
4 4 N 1.30284 * 110.06305 * 180.02562 * 3 2 1
5 5 C 1.34652 * 109.66473 * 0.02562 * 4 3 2
6 6 C 1.37944 * 126.35961 * 180.02562 * 2 1 3
7 7 N 1.32111 * 133.80488 * 359.96413 * 6 2 1
8 8 C 1.31725 * 121.94890 * 180.02562 * 7 6 2
9 9 C 1.38343 * 121.54843 * 0.02562 * 8 7 6
10 10 C 1.39639 * 119.37066 * 0.02562 * 9 8 7
11 11 C 1.47766 * 121.07038 * 179.97438 * 10 9 8
12 12 O 1.21558 * 120.00046 * 234.92332 * 11 10 9
13 13 N 1.34778 * 119.99997 * 54.92631 * 11 10 9
14 14 C 1.46497 * 120.00113 * 185.55469 * 13 11 10
15 15 C 1.50701 * 109.46952 * 89.99857 * 14 13 11
16 16 H 1.07994 * 120.00249 * 359.97438 * 15 14 13
17 17 C 1.37879 * 119.99530 * 180.02562 * 15 14 13
18 18 N 1.31513 * 120.00366 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99744 * 180.02562 * 17 15 14
20 20 H 1.48502 * 109.46893 * 359.97438 * 19 17 15
21 21 H 1.48504 * 109.47065 * 119.99761 * 19 17 15
22 22 H 1.48493 * 109.47218 * 240.00240 * 19 17 15
23 23 C 1.46498 * 119.99764 * 5.55628 * 13 11 10
24 24 C 1.53004 * 109.47274 * 94.96991 * 23 13 11
25 25 F 1.39897 * 109.47221 * 59.99623 * 24 23 13
26 26 F 1.39901 * 109.47159 * 179.97438 * 24 23 13
27 27 F 1.39900 * 109.46855 * 299.99553 * 24 23 13
28 28 H 1.09001 * 109.46924 * 269.97010 * 1 2 3
29 29 H 1.08995 * 109.47377 * 29.96834 * 1 2 3
30 30 H 1.08995 * 109.47486 * 149.97252 * 1 2 3
31 31 H 1.08003 * 124.97061 * 0.02562 * 3 2 1
32 32 H 1.08003 * 119.23287 * 180.28182 * 8 7 6
33 33 H 1.07994 * 120.31731 * 180.02562 * 9 8 7
34 34 H 1.09003 * 109.47315 * 210.00216 * 14 13 11
35 35 H 1.08999 * 109.47125 * 329.99956 * 14 13 11
36 36 H 0.97002 * 120.00123 * 179.97438 * 18 17 15
37 37 H 1.09003 * 109.47106 * 214.96957 * 23 13 11
38 38 H 1.09004 * 109.47429 * 334.96725 * 23 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2712 1.0951 0.0000
4 7 3.5216 0.7295 -0.0005
5 6 3.6008 -0.6147 -0.0015
6 6 2.2828 -1.1109 -0.0005
7 7 2.0571 -2.4126 -0.0005
8 6 3.0393 -3.2903 -0.0005
9 6 4.3646 -2.8935 -0.0001
10 6 4.6717 -1.5313 0.0010
11 6 6.0741 -1.0657 0.0020
12 8 6.4598 -0.3006 0.8643
13 7 6.9255 -1.4893 -0.9530
14 6 8.3431 -1.1263 -0.8839
15 6 9.0929 -2.1758 -0.1045
16 1 8.5661 -3.0277 0.2994
17 6 10.4513 -2.0479 0.0939
18 7 11.0928 -1.0103 -0.3975
19 14 11.3809 -3.3491 1.0594
20 1 10.4364 -4.4067 1.5009
21 1 12.4299 -3.9501 0.1971
22 1 12.0149 -2.7247 2.2482
23 6 6.4333 -2.3126 -2.0603
24 6 6.1106 -1.4166 -3.2579
25 9 7.2673 -0.7393 -3.6586
26 9 5.6411 -2.2029 -4.3155
27 9 5.1289 -0.4885 -2.8947
28 1 -0.3633 -0.0005 1.0277
29 1 -0.3634 0.8902 -0.5133
30 1 -0.3634 -0.8897 -0.5142
31 1 1.9254 2.1183 0.0004
32 1 2.8046 -4.3445 -0.0052
33 1 5.1543 -3.6302 -0.0006
34 1 8.7514 -1.0620 -1.8926
35 1 8.4474 -0.1615 -0.3876
36 1 12.0484 -0.9201 -0.2576
37 1 7.1981 -3.0358 -2.3433
38 1 5.5321 -2.8403 -1.7481
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000289074701.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:22
Heat of formation + Delta-G solvation = -80.962033 kcal
Electronic energy + Delta-G solvation = -30917.059396 eV
Core-core repulsion = 26153.520529 eV
Total energy + Delta-G solvation = -4763.538867 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.104 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-49.73370 -47.29442 -47.16643 -42.47887 -39.48469 -38.05656 -35.34223 -34.59479
-32.91549 -31.91654 -29.84637 -29.26775 -27.38700 -27.21348 -24.78820 -23.35643
-23.03485 -22.90070 -21.23168 -19.20193 -18.36987 -18.19050 -17.87904 -17.65702
-17.24446 -16.56896 -16.29654 -16.02290 -15.66506 -15.17731 -14.79030 -14.34746
-14.23344 -14.09073 -14.04717 -13.84401 -13.69506 -13.66170 -13.38296 -13.34209
-13.13404 -12.85898 -12.70900 -12.55941 -12.28956 -12.03367 -11.88496 -11.28534
-10.97401 -10.89006 -10.79306 -10.61404 -10.24628 -9.78991 -9.66159 -9.02448
-8.76152 -8.56010 -8.48111 -8.02256 -6.09579 -4.15944 0.51712 1.09310
2.16067 2.71167 2.86185 3.27403 3.28068 3.36132 3.38577 3.44826
3.78697 3.94112 4.15893 4.18993 4.30149 4.33929 4.40269 4.49870
4.72125 4.81027 4.85279 4.91528 5.08859 5.16514 5.21589 5.25353
5.32444 5.55561 5.78026 5.80818 6.01493 6.48021 6.77469 6.85113
7.25522 7.38748 7.69617 7.71756 7.84622 8.02687 8.12426 8.67229
8.88851 9.49247 10.98754
Molecular weight = 342.10amu
Principal moments of inertia in cm(-1)
A = 0.013593 B = 0.004140 C = 0.003735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2059.333340 B = 6761.061458 C = 7495.008732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.488 5.488
3 C 0.271 3.729
4 N -0.469 5.469
5 C 0.048 3.952
6 C 0.236 3.764
7 N -0.476 5.476
8 C 0.136 3.864
9 C -0.167 4.167
10 C -0.016 4.016
11 C 0.563 3.437
12 O -0.495 6.495
13 N -0.587 5.587
14 C 0.240 3.760
15 C -0.535 4.535
16 H 0.061 0.939
17 C 0.064 3.936
18 N -0.889 5.889
19 Si 0.900 3.100
20 H -0.272 1.272
21 H -0.283 1.283
22 H -0.283 1.283
23 C 0.063 3.937
24 C 0.428 3.572
25 F -0.173 7.173
26 F -0.189 7.189
27 F -0.183 7.183
28 H 0.075 0.925
29 H 0.089 0.911
30 H 0.088 0.912
31 H 0.223 0.777
32 H 0.172 0.828
33 H 0.155 0.845
34 H 0.045 0.955
35 H 0.052 0.948
36 H 0.264 0.736
37 H 0.131 0.869
38 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.307 -2.486 -3.783 21.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.181 5.181
3 C -0.015 4.015
4 N -0.186 5.186
5 C -0.074 4.074
6 C 0.000 4.000
7 N -0.189 5.189
8 C -0.030 4.030
9 C -0.190 4.190
10 C -0.029 4.029
11 C 0.348 3.652
12 O -0.368 6.368
13 N -0.319 5.319
14 C 0.123 3.877
15 C -0.574 4.574
16 H 0.079 0.921
17 C -0.139 4.139
18 N -0.527 5.527
19 Si 0.727 3.273
20 H -0.197 1.197
21 H -0.209 1.209
22 H -0.209 1.209
23 C -0.064 4.064
24 C 0.371 3.629
25 F -0.155 7.155
26 F -0.171 7.171
27 F -0.164 7.164
28 H 0.093 0.907
29 H 0.107 0.893
30 H 0.107 0.893
31 H 0.239 0.761
32 H 0.189 0.811
33 H 0.172 0.828
34 H 0.063 0.937
35 H 0.070 0.930
36 H 0.074 0.926
37 H 0.148 0.852
38 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -21.194 -1.608 -3.322 21.513
hybrid contribution 0.566 -0.695 0.233 0.926
sum -20.628 -2.303 -3.088 20.985
Atomic orbital electron populations
1.21987 0.75361 1.04795 1.03615 1.45064 1.07602 1.04569 1.60851
1.25597 0.84723 0.93167 0.97967 1.70244 1.17881 1.10798 1.19649
1.19121 0.91914 0.91230 1.05172 1.18889 0.88829 0.88072 1.04198
1.66149 1.38023 0.99374 1.15378 1.22464 0.86980 0.98358 0.95163
1.22198 0.99009 0.94572 1.03239 1.19877 0.93517 0.92351 0.97184
1.17862 0.83614 0.81096 0.82603 1.90817 1.76922 1.32636 1.36391
1.48097 1.11739 1.50751 1.21334 1.19599 0.71495 0.97883 0.98759
1.21413 0.92970 1.07867 1.35100 0.92067 1.24933 0.97445 0.95889
0.95629 1.69949 1.09399 1.28482 1.44868 0.86417 0.79700 0.81370
0.79768 1.19704 1.20894 1.20852 1.22852 1.04940 0.93120 0.85519
1.21613 0.74654 0.81019 0.85572 1.93218 1.48974 1.81543 1.91752
1.93144 1.89066 1.74385 1.60506 1.93198 1.63442 1.68294 1.91511
0.90671 0.89268 0.89320 0.76078 0.81053 0.82757 0.93688 0.93013
0.92585 0.85152 0.86655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.51 11.20 59.85 0.67 1.18 16
2 N -0.49 -5.44 3.20 -124.99 -0.40 -5.84 16
3 C 0.27 3.16 12.50 -89.69 -1.12 2.04 16
4 N -0.47 -8.13 11.23 -11.88 -0.13 -8.26 16
5 C 0.05 0.85 7.01 -84.62 -0.59 0.26 16
6 C 0.24 3.45 8.02 -155.64 -1.25 2.21 16
7 N -0.48 -6.37 10.35 -12.30 -0.13 -6.50 16
8 C 0.14 1.56 11.14 -17.56 -0.20 1.37 16
9 C -0.17 -2.25 7.61 -39.02 -0.30 -2.55 16
10 C -0.02 -0.29 4.65 -104.45 -0.49 -0.77 16
11 C 0.56 12.41 6.95 -12.36 -0.09 12.33 16
12 O -0.49 -13.12 16.65 5.32 0.09 -13.03 16
13 N -0.59 -12.47 2.37 -176.20 -0.42 -12.89 16
14 C 0.24 6.19 4.99 -5.19 -0.03 6.17 16
15 C -0.53 -14.54 9.39 -34.44 -0.32 -14.87 16
16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16
17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
18 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16
19 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16
20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
23 C 0.06 1.03 5.30 -4.04 -0.02 1.01 16
24 C 0.43 7.21 3.29 37.16 0.12 7.33 16
25 F -0.17 -3.32 15.77 2.25 0.04 -3.29 16
26 F -0.19 -2.83 17.32 2.25 0.04 -2.79 16
27 F -0.18 -3.34 16.70 2.25 0.04 -3.30 16
28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.22 1.36 8.06 -52.48 -0.42 0.94 16
32 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16
33 H 0.15 1.75 7.60 -52.49 -0.40 1.35 16
34 H 0.05 1.18 6.81 -51.93 -0.35 0.82 16
35 H 0.05 1.53 7.35 -51.93 -0.38 1.15 16
36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
37 H 0.13 1.93 8.11 -51.93 -0.42 1.51 16
38 H 0.12 1.53 4.44 -51.93 -0.23 1.30 16
LS Contribution 346.20 15.07 5.22 5.22
Total: -1.00 -37.63 346.20 -7.09 -44.72
By element:
Atomic # 1 Polarization: 1.11 SS G_CDS: -3.44 Total: -2.34 kcal
Atomic # 6 Polarization: 21.07 SS G_CDS: -3.70 Total: 17.37 kcal
Atomic # 7 Polarization: -58.41 SS G_CDS: -0.34 Total: -58.75 kcal
Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal
Atomic # 9 Polarization: -9.49 SS G_CDS: 0.11 Total: -9.37 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -37.63 -7.09 -44.72 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000289074701.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.244 kcal
(2) G-P(sol) polarization free energy of solvation -37.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds