Wall clock time and date at job start Sat Apr 11 2020 06:30:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35982 * 126.35984 * 2 1
4 4 N 1.30284 * 110.06305 * 180.02562 * 3 2 1
5 5 C 1.34652 * 109.66473 * 0.02562 * 4 3 2
6 6 C 1.37944 * 126.35961 * 180.02562 * 2 1 3
7 7 N 1.32111 * 133.80488 * 359.96413 * 6 2 1
8 8 C 1.31725 * 121.94890 * 180.02562 * 7 6 2
9 9 C 1.38343 * 121.54843 * 0.02562 * 8 7 6
10 10 C 1.39639 * 119.37066 * 0.02562 * 9 8 7
11 11 C 1.47766 * 121.07038 * 179.97438 * 10 9 8
12 12 O 1.21558 * 120.00046 * 234.92332 * 11 10 9
13 13 N 1.34778 * 119.99997 * 54.92631 * 11 10 9
14 14 C 1.46497 * 120.00113 * 185.55469 * 13 11 10
15 15 C 1.50701 * 109.46952 * 89.99857 * 14 13 11
16 16 H 1.07994 * 120.00249 * 359.97438 * 15 14 13
17 17 C 1.37879 * 119.99530 * 180.02562 * 15 14 13
18 18 N 1.31513 * 120.00366 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 119.99744 * 180.02562 * 17 15 14
20 20 H 1.48502 * 109.46893 * 359.97438 * 19 17 15
21 21 H 1.48504 * 109.47065 * 119.99761 * 19 17 15
22 22 H 1.48493 * 109.47218 * 240.00240 * 19 17 15
23 23 C 1.46498 * 119.99764 * 5.55628 * 13 11 10
24 24 C 1.53004 * 109.47274 * 94.96991 * 23 13 11
25 25 F 1.39897 * 109.47221 * 59.99623 * 24 23 13
26 26 F 1.39901 * 109.47159 * 179.97438 * 24 23 13
27 27 F 1.39900 * 109.46855 * 299.99553 * 24 23 13
28 28 H 1.09001 * 109.46924 * 269.97010 * 1 2 3
29 29 H 1.08995 * 109.47377 * 29.96834 * 1 2 3
30 30 H 1.08995 * 109.47486 * 149.97252 * 1 2 3
31 31 H 1.08003 * 124.97061 * 0.02562 * 3 2 1
32 32 H 1.08003 * 119.23287 * 180.28182 * 8 7 6
33 33 H 1.07994 * 120.31731 * 180.02562 * 9 8 7
34 34 H 1.09003 * 109.47315 * 210.00216 * 14 13 11
35 35 H 1.08999 * 109.47125 * 329.99956 * 14 13 11
36 36 H 0.97002 * 120.00123 * 179.97438 * 18 17 15
37 37 H 1.09003 * 109.47106 * 214.96957 * 23 13 11
38 38 H 1.09004 * 109.47429 * 334.96725 * 23 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2712 1.0951 0.0000
4 7 3.5216 0.7295 -0.0005
5 6 3.6008 -0.6147 -0.0015
6 6 2.2828 -1.1109 -0.0005
7 7 2.0571 -2.4126 -0.0005
8 6 3.0393 -3.2903 -0.0005
9 6 4.3646 -2.8935 -0.0001
10 6 4.6717 -1.5313 0.0010
11 6 6.0741 -1.0657 0.0020
12 8 6.4598 -0.3006 0.8643
13 7 6.9255 -1.4893 -0.9530
14 6 8.3431 -1.1263 -0.8839
15 6 9.0929 -2.1758 -0.1045
16 1 8.5661 -3.0277 0.2994
17 6 10.4513 -2.0479 0.0939
18 7 11.0928 -1.0103 -0.3975
19 14 11.3809 -3.3491 1.0594
20 1 10.4364 -4.4067 1.5009
21 1 12.4299 -3.9501 0.1971
22 1 12.0149 -2.7247 2.2482
23 6 6.4333 -2.3126 -2.0603
24 6 6.1106 -1.4166 -3.2579
25 9 7.2673 -0.7393 -3.6586
26 9 5.6411 -2.2029 -4.3155
27 9 5.1289 -0.4885 -2.8947
28 1 -0.3633 -0.0005 1.0277
29 1 -0.3634 0.8902 -0.5133
30 1 -0.3634 -0.8897 -0.5142
31 1 1.9254 2.1183 0.0004
32 1 2.8046 -4.3445 -0.0052
33 1 5.1543 -3.6302 -0.0006
34 1 8.7514 -1.0620 -1.8926
35 1 8.4474 -0.1615 -0.3876
36 1 12.0484 -0.9201 -0.2576
37 1 7.1981 -3.0358 -2.3433
38 1 5.5321 -2.8403 -1.7481
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000289074701.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:21
Heat of formation + Delta-G solvation = -105.925492 kcal
Electronic energy + Delta-G solvation = -30918.141893 eV
Core-core repulsion = 26153.520529 eV
Total energy + Delta-G solvation = -4764.621364 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.104 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-51.13827 -48.64943 -48.63851 -43.47090 -41.01490 -39.19537 -37.08477 -35.56193
-34.87580 -33.13104 -30.91432 -30.85626 -29.03963 -28.04977 -26.21598 -24.86976
-24.47208 -23.98273 -22.53096 -20.58103 -19.62911 -19.60541 -19.20952 -18.88082
-18.43641 -18.30878 -17.62608 -17.40533 -17.05090 -16.51623 -16.07840 -15.87713
-15.56220 -15.54155 -15.36282 -15.06587 -14.91704 -14.82083 -14.77529 -14.55162
-14.50070 -14.23552 -13.88902 -13.66792 -13.52216 -13.44145 -13.28750 -13.15767
-12.85764 -12.60234 -12.21963 -11.90528 -11.76702 -11.73495 -11.23474 -10.64137
-10.24466 -9.92297 -9.70713 -9.59587 -8.21971 -6.37246 -0.58261 0.07842
1.27723 1.41277 1.41567 1.44139 1.55510 1.72746 1.85025 1.91983
2.41482 2.66264 2.80515 2.88324 2.97561 3.10138 3.16272 3.33096
3.46239 3.65300 3.91433 3.93327 4.06903 4.21142 4.26290 4.32153
4.46483 4.73841 4.76583 4.87037 4.90955 5.09951 5.18268 5.36349
5.52209 5.73006 5.95597 5.99839 6.28581 6.70954 6.72667 6.74202
7.02953 7.33873 8.87037
Molecular weight = 342.10amu
Principal moments of inertia in cm(-1)
A = 0.013593 B = 0.004140 C = 0.003735
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2059.333340 B = 6761.061458 C = 7495.008732
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.480 5.480
3 C 0.291 3.709
4 N -0.541 5.541
5 C 0.019 3.981
6 C 0.224 3.776
7 N -0.472 5.472
8 C 0.147 3.853
9 C -0.155 4.155
10 C -0.054 4.054
11 C 0.562 3.438
12 O -0.560 6.560
13 N -0.591 5.591
14 C 0.258 3.742
15 C -0.544 4.544
16 H 0.070 0.930
17 C 0.008 3.992
18 N -0.929 5.929
19 Si 0.973 3.027
20 H -0.257 1.257
21 H -0.271 1.271
22 H -0.287 1.287
23 C 0.064 3.936
24 C 0.430 3.570
25 F -0.191 7.191
26 F -0.172 7.172
27 F -0.191 7.191
28 H 0.088 0.912
29 H 0.124 0.876
30 H 0.088 0.912
31 H 0.271 0.729
32 H 0.224 0.776
33 H 0.177 0.823
34 H 0.035 0.965
35 H -0.002 1.002
36 H 0.267 0.733
37 H 0.149 0.851
38 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.128 -5.115 -3.897 24.970
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.172 5.172
3 C 0.006 3.994
4 N -0.260 5.260
5 C -0.104 4.104
6 C -0.013 4.013
7 N -0.185 5.185
8 C -0.019 4.019
9 C -0.177 4.177
10 C -0.067 4.067
11 C 0.351 3.649
12 O -0.437 6.437
13 N -0.321 5.321
14 C 0.138 3.862
15 C -0.583 4.583
16 H 0.088 0.912
17 C -0.191 4.191
18 N -0.568 5.568
19 Si 0.797 3.203
20 H -0.181 1.181
21 H -0.196 1.196
22 H -0.213 1.213
23 C -0.062 4.062
24 C 0.374 3.626
25 F -0.173 7.173
26 F -0.154 7.154
27 F -0.173 7.173
28 H 0.107 0.893
29 H 0.143 0.857
30 H 0.107 0.893
31 H 0.287 0.713
32 H 0.241 0.759
33 H 0.194 0.806
34 H 0.053 0.947
35 H 0.017 0.983
36 H 0.076 0.924
37 H 0.166 0.834
38 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -24.098 -4.266 -3.480 24.719
hybrid contribution 1.290 0.190 0.224 1.323
sum -22.808 -4.076 -3.256 23.397
Atomic orbital electron populations
1.22379 0.72117 1.06607 1.05089 1.45431 1.09289 1.03270 1.59232
1.26520 0.83469 0.94966 0.94487 1.70178 1.21198 1.11489 1.23157
1.19389 0.93170 0.91683 1.06188 1.19139 0.88448 0.89094 1.04569
1.66333 1.38424 0.98876 1.14859 1.23290 0.85544 1.00204 0.92890
1.22541 1.00875 0.92875 1.01389 1.19675 0.90679 0.94551 1.01771
1.18586 0.85315 0.79742 0.81302 1.90755 1.78527 1.35575 1.38855
1.47934 1.10106 1.51282 1.22773 1.19026 0.74449 0.95442 0.97277
1.21720 0.93428 1.08074 1.35062 0.91220 1.25913 0.98545 0.98115
0.96565 1.70090 1.09822 1.30592 1.46308 0.85287 0.78453 0.78660
0.77914 1.18102 1.19630 1.21327 1.23183 1.06930 0.92465 0.83632
1.21628 0.74000 0.80833 0.86122 1.93187 1.50088 1.82064 1.91962
1.93174 1.88769 1.73717 1.59728 1.93189 1.63673 1.68787 1.91644
0.89301 0.85739 0.89300 0.71328 0.75933 0.80584 0.94660 0.98345
0.92402 0.83362 0.83160
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.66 11.20 127.77 1.43 2.09 16
2 N -0.48 -9.63 3.20 -549.34 -1.76 -11.39 16
3 C 0.29 6.38 12.50 180.02 2.25 8.63 16
4 N -0.54 -19.23 11.23 -191.51 -2.15 -21.38 16
5 C 0.02 0.66 7.01 40.01 0.28 0.94 16
6 C 0.22 6.20 8.02 133.92 1.07 7.27 16
7 N -0.47 -11.24 10.35 -192.83 -2.00 -13.24 16
8 C 0.15 2.82 11.14 84.73 0.94 3.76 16
9 C -0.15 -3.83 7.61 22.63 0.17 -3.66 16
10 C -0.05 -1.94 4.65 -19.75 -0.09 -2.03 16
11 C 0.56 26.02 6.95 86.76 0.60 26.62 16
12 O -0.56 -32.02 16.65 -3.90 -0.06 -32.09 16
13 N -0.59 -26.00 2.37 -829.65 -1.97 -27.97 16
14 C 0.26 14.06 4.99 85.63 0.43 14.49 16
15 C -0.54 -30.33 9.39 25.60 0.24 -30.09 16
16 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16
17 C 0.01 0.45 5.46 84.66 0.46 0.91 16
18 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16
19 Si 0.97 43.69 29.54 68.60 2.03 45.72 16
20 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16
21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16
22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16
23 C 0.06 2.03 5.30 86.38 0.46 2.49 16
24 C 0.43 14.47 3.29 71.98 0.24 14.70 16
25 F -0.19 -7.57 15.77 44.97 0.71 -6.86 16
26 F -0.17 -4.88 17.32 44.97 0.78 -4.10 16
27 F -0.19 -7.10 16.70 44.97 0.75 -6.35 16
28 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
29 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16
30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.27 2.56 8.06 -2.91 -0.02 2.53 16
32 H 0.22 1.87 8.06 -2.91 -0.02 1.84 16
33 H 0.18 3.44 7.60 -2.91 -0.02 3.42 16
34 H 0.04 1.96 6.81 -2.39 -0.02 1.94 16
35 H 0.00 -0.10 7.35 -2.39 -0.02 -0.12 16
36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16
37 H 0.15 4.19 8.11 -2.39 -0.02 4.17 16
38 H 0.15 3.70 4.44 -2.39 -0.01 3.69 16
Total: -1.00 -89.99 346.20 6.23 -83.75
By element:
Atomic # 1 Polarization: 2.54 SS G_CDS: 1.14 Total: 3.67 kcal
Atomic # 6 Polarization: 37.64 SS G_CDS: 8.49 Total: 46.13 kcal
Atomic # 7 Polarization: -122.28 SS G_CDS: -7.59 Total: -129.88 kcal
Atomic # 8 Polarization: -32.02 SS G_CDS: -0.06 Total: -32.09 kcal
Atomic # 9 Polarization: -19.55 SS G_CDS: 2.24 Total: -17.31 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -89.99 6.23 -83.75 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000289074701.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.171 kcal
(2) G-P(sol) polarization free energy of solvation -89.987 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.158 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.755 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.925 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds