Wall clock time and date at job start Sat Apr 11 2020 06:30:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86796 * 120.00256 * 2 1
4 4 H 1.48505 * 109.46560 * 269.99720 * 3 2 1
5 5 H 1.48498 * 109.47209 * 29.99763 * 3 2 1
6 6 H 1.48497 * 109.47331 * 150.00015 * 3 2 1
7 7 C 1.37878 * 119.99467 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00489 * 0.02562 * 7 2 1
10 10 C 1.52990 * 109.47354 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.47354 * 179.97438 * 10 9 7
12 12 O 1.21295 * 119.99564 * 0.02562 * 11 10 9
13 13 N 1.34780 * 120.00188 * 180.02562 * 11 10 9
14 14 C 1.40144 * 119.99567 * 185.52891 * 13 11 10
15 15 C 1.38298 * 120.02580 * 24.82415 * 14 13 11
16 16 C 1.39689 * 119.83834 * 179.97438 * 15 14 13
17 17 C 1.47619 * 120.06188 * 180.02562 * 16 15 14
18 18 N 1.34772 * 120.00079 * 180.02562 * 17 16 15
19 19 O 1.21585 * 119.99655 * 359.97438 * 17 16 15
20 20 C 1.39715 * 119.87427 * 359.97438 * 16 15 14
21 21 C 1.37788 * 120.04002 * 359.73044 * 20 16 15
22 22 C 1.38816 * 120.16096 * 0.54547 * 21 20 16
23 23 O 1.35782 * 119.93860 * 179.72610 * 22 21 20
24 24 C 1.42908 * 116.99953 * 359.72615 * 23 22 21
25 25 C 1.52997 * 109.47256 * 180.02562 * 24 23 22
26 26 F 1.39905 * 109.47072 * 300.00134 * 25 24 23
27 27 F 1.39904 * 109.47090 * 59.99552 * 25 24 23
28 28 H 0.97003 * 119.99815 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.47033 * 59.99245 * 9 7 2
30 30 H 1.09003 * 109.46833 * 299.99608 * 9 7 2
31 31 H 1.09000 * 109.47250 * 59.99888 * 10 9 7
32 32 H 1.09003 * 109.47248 * 299.99865 * 10 9 7
33 33 H 0.97000 * 119.99999 * 5.52398 * 13 11 10
34 34 H 1.08005 * 120.07664 * 359.96008 * 15 14 13
35 35 H 0.97000 * 119.99744 * 0.02562 * 18 17 16
36 36 H 0.96996 * 120.00288 * 179.97438 * 18 17 16
37 37 H 1.08008 * 119.98288 * 179.97438 * 20 16 15
38 38 H 1.08000 * 119.92110 * 180.29323 * 21 20 16
39 39 H 1.08997 * 109.46922 * 59.99919 * 24 23 22
40 40 H 1.08994 * 109.47038 * 300.00049 * 24 23 22
41 41 H 1.08999 * 109.47327 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0462 -1.4002
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4915 -4.9672 0.0012
12 8 0.2786 -4.9671 0.0011
13 7 2.1654 -6.1345 0.0018
14 6 1.4694 -7.3453 -0.1145
15 6 0.2288 -7.3746 -0.7250
16 6 -0.4612 -8.5837 -0.8394
17 6 -1.7855 -8.6207 -1.4906
18 7 -2.4504 -9.7879 -1.5998
19 8 -2.2767 -7.5980 -1.9276
20 6 0.1048 -9.7582 -0.3372
21 6 1.3439 -9.7242 0.2647
22 6 2.0285 -8.5226 0.3843
23 8 3.2467 -8.4934 0.9832
24 6 3.7594 -9.7347 1.4716
25 6 5.1310 -9.5044 2.1093
26 9 6.0081 -8.9815 1.1530
27 9 5.0061 -8.6015 3.1706
28 1 -0.4850 0.8401 -0.0004
29 1 0.6245 -2.5571 -0.8896
30 1 0.6240 -2.5568 0.8904
31 1 2.8717 -3.6044 0.8905
32 1 2.8717 -3.6044 -0.8895
33 1 3.1320 -6.1364 0.0827
34 1 -0.2055 -6.4646 -1.1122
35 1 -2.0589 -10.6036 -1.2501
36 1 -3.3207 -9.8122 -2.0274
37 1 -0.4273 -10.6940 -0.4243
38 1 1.7817 -10.6341 0.6480
39 1 3.8563 -10.4383 0.6447
40 1 3.0763 -10.1418 2.2169
41 1 5.5218 -10.4511 2.4822
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000291464995.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:26
Heat of formation + Delta-G solvation = -189.469349 kcal
Electronic energy + Delta-G solvation = -29131.592749 eV
Core-core repulsion = 24454.516205 eV
Total energy + Delta-G solvation = -4677.076544 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.122 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.34488 -47.37492 -41.05576 -39.47826 -39.32336 -37.16863 -34.73713 -33.73308
-33.46549 -31.36769 -31.20285 -30.31512 -29.13536 -25.75493 -24.71617 -23.72968
-22.88631 -21.42668 -20.67495 -19.70590 -19.15235 -18.33204 -17.94586 -17.43773
-17.25693 -17.08427 -16.82802 -16.13952 -16.07903 -15.77885 -15.27141 -14.84263
-14.72958 -14.45123 -14.29212 -14.22397 -14.19070 -13.71866 -13.59703 -13.35849
-13.11878 -12.92862 -12.63396 -12.31966 -12.14632 -11.78779 -11.51623 -11.48044
-11.13514 -10.90669 -10.58181 -10.48188 -10.14061 -9.94733 -9.84679 -9.65176
-9.21029 -9.04716 -8.81193 -8.29040 -7.92506 -5.92312 -3.96976 0.66931
1.09356 2.35929 2.63700 3.14928 3.18800 3.22913 3.36943 3.41594
3.43534 3.46254 3.61501 3.74046 3.89157 4.28079 4.41428 4.43785
4.50950 4.65676 4.69487 4.77919 4.97688 5.15062 5.41202 5.42624
5.65122 5.74855 5.82572 6.10152 6.19585 6.21232 6.34493 6.59410
6.64498 6.86856 7.00424 7.17415 7.66299 7.77569 7.87709 8.09641
8.16625 8.39147 8.58880 9.10877 9.66494 11.18571
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.007753 B = 0.003248 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3610.676205 B = 8618.582115 C =11967.188505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.058 3.942
3 Si 0.893 3.107
4 H -0.281 1.281
5 H -0.287 1.287
6 H -0.274 1.274
7 C -0.528 4.528
8 H 0.056 0.944
9 C 0.036 3.964
10 C -0.128 4.128
11 C 0.508 3.492
12 O -0.507 6.507
13 N -0.675 5.675
14 C 0.137 3.863
15 C -0.041 4.041
16 C -0.151 4.151
17 C 0.564 3.436
18 N -0.855 5.855
19 O -0.527 6.527
20 C -0.075 4.075
21 C -0.196 4.196
22 C 0.113 3.887
23 O -0.300 6.300
24 C 0.006 3.994
25 C 0.273 3.727
26 F -0.196 7.196
27 F -0.195 7.195
28 H 0.261 0.739
29 H 0.026 0.974
30 H 0.025 0.975
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.415 0.585
34 H 0.172 0.828
35 H 0.398 0.602
36 H 0.404 0.596
37 H 0.129 0.871
38 H 0.135 0.865
39 H 0.095 0.905
40 H 0.095 0.905
41 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.350 -31.618 2.212 32.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.527 5.527
2 C -0.144 4.144
3 Si 0.721 3.279
4 H -0.207 1.207
5 H -0.212 1.212
6 H -0.199 1.199
7 C -0.566 4.566
8 H 0.075 0.925
9 C -0.002 4.002
10 C -0.167 4.167
11 C 0.298 3.702
12 O -0.380 6.380
13 N -0.321 5.321
14 C 0.041 3.959
15 C -0.062 4.062
16 C -0.155 4.155
17 C 0.350 3.650
18 N -0.420 5.420
19 O -0.403 6.403
20 C -0.094 4.094
21 C -0.215 4.215
22 C 0.066 3.934
23 O -0.214 6.214
24 C -0.070 4.070
25 C 0.219 3.781
26 F -0.178 7.178
27 F -0.176 7.176
28 H 0.071 0.929
29 H 0.044 0.956
30 H 0.044 0.956
31 H 0.103 0.897
32 H 0.104 0.896
33 H 0.251 0.749
34 H 0.190 0.810
35 H 0.227 0.773
36 H 0.235 0.765
37 H 0.146 0.854
38 H 0.153 0.847
39 H 0.113 0.887
40 H 0.114 0.886
41 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 6.323 -30.409 2.022 31.125
hybrid contribution 0.812 0.143 0.171 0.842
sum 7.135 -30.266 2.193 31.173
Atomic orbital electron populations
1.70004 1.06042 1.26607 1.50036 1.25024 0.94823 0.99231 0.95283
0.86582 0.79759 0.83495 0.78059 1.20668 1.21239 1.19879 1.21193
0.92941 0.90907 1.51566 0.92537 1.18934 0.93134 0.89249 0.98863
1.21918 1.00853 0.90955 1.03017 1.21940 0.88866 0.85393 0.74018
1.90680 1.14226 1.86985 1.46106 1.43873 1.11139 1.03672 1.73386
1.17112 0.94144 0.84415 1.00267 1.21577 0.91809 0.99356 0.93434
1.19664 0.96108 0.94100 1.05636 1.18144 0.84899 0.83390 0.78529
1.43718 1.23861 1.10163 1.64272 1.90901 1.68541 1.33041 1.47766
1.20903 0.94621 0.97057 0.96857 1.20837 0.97324 0.96229 1.07112
1.18867 0.85577 0.93702 0.95288 1.86055 1.31533 1.31691 1.72080
1.24057 0.94727 0.87475 1.00787 1.22019 0.87800 0.90664 0.77585
1.93046 1.70844 1.89007 1.64868 1.93060 1.96359 1.71115 1.57085
0.92927 0.95581 0.95644 0.89746 0.89626 0.74902 0.81046 0.77311
0.76523 0.85365 0.84692 0.88671 0.88647 0.85158
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.87 13.29 55.43 0.74 -27.13 16
2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16
4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16
8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16
9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16
10 C -0.13 -2.63 5.64 -27.89 -0.16 -2.79 16
11 C 0.51 10.08 7.63 -10.98 -0.08 10.00 16
12 O -0.51 -12.06 13.15 5.54 0.07 -11.99 16
13 N -0.68 -10.56 5.29 -9.78 -0.05 -10.61 16
14 C 0.14 2.04 6.44 -83.55 -0.54 1.50 16
15 C -0.04 -0.67 8.26 -39.02 -0.32 -0.99 16
16 C -0.15 -1.96 5.87 -104.98 -0.62 -2.58 16
17 C 0.56 7.67 8.04 -12.43 -0.10 7.57 16
18 N -0.86 -6.73 8.82 30.48 0.27 -6.46 16
19 O -0.53 -9.97 17.17 5.29 0.09 -9.88 16
20 C -0.07 -0.64 9.53 -39.19 -0.37 -1.02 16
21 C -0.20 -1.62 9.01 -39.53 -0.36 -1.97 16
22 C 0.11 1.29 6.71 -38.88 -0.26 1.03 16
23 O -0.30 -3.06 9.42 -19.06 -0.18 -3.24 16
24 C 0.01 0.03 4.96 37.16 0.18 0.22 16
25 C 0.27 1.50 5.63 37.16 0.21 1.71 16
26 F -0.20 -1.69 17.28 2.25 0.04 -1.65 16
27 F -0.19 -1.80 17.28 2.25 0.04 -1.76 16
28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
29 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16
30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16
31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16
32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16
33 H 0.41 5.42 8.34 -40.82 -0.34 5.08 16
34 H 0.17 3.49 5.36 -52.48 -0.28 3.21 16
35 H 0.40 1.69 6.85 -40.82 -0.28 1.41 16
36 H 0.40 2.70 8.93 -40.82 -0.36 2.33 16
37 H 0.13 0.57 6.39 -52.48 -0.34 0.24 16
38 H 0.14 0.59 6.27 -52.49 -0.33 0.26 16
39 H 0.10 0.26 7.64 -51.93 -0.40 -0.13 16
40 H 0.10 0.31 7.66 -51.93 -0.40 -0.09 16
41 H 0.13 0.09 8.14 -51.93 -0.42 -0.34 16
LS Contribution 363.23 15.07 5.47 5.47
Total: -1.00 -40.44 363.23 -5.85 -46.29
By element:
Atomic # 1 Polarization: 8.66 SS G_CDS: -4.38 Total: 4.29 kcal
Atomic # 6 Polarization: 2.60 SS G_CDS: -2.95 Total: -0.34 kcal
Atomic # 7 Polarization: -45.17 SS G_CDS: 0.95 Total: -44.21 kcal
Atomic # 8 Polarization: -25.10 SS G_CDS: -0.02 Total: -25.11 kcal
Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -40.44 -5.85 -46.29 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291464995.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -143.180 kcal
(2) G-P(sol) polarization free energy of solvation -40.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal
(6) G-S(sol) free energy of system = (1) + (5) -189.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds