Wall clock time and date at job start Sat Apr 11 2020 06:30:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86796 * 120.00256 * 2 1
4 4 H 1.48505 * 109.46560 * 269.99720 * 3 2 1
5 5 H 1.48498 * 109.47209 * 29.99763 * 3 2 1
6 6 H 1.48497 * 109.47331 * 150.00015 * 3 2 1
7 7 C 1.37878 * 119.99467 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99977 * 179.97438 * 7 2 1
9 9 C 1.50702 * 120.00489 * 0.02562 * 7 2 1
10 10 C 1.52990 * 109.47354 * 179.97438 * 9 7 2
11 11 C 1.50702 * 109.47354 * 179.97438 * 10 9 7
12 12 O 1.21295 * 119.99564 * 0.02562 * 11 10 9
13 13 N 1.34780 * 120.00188 * 180.02562 * 11 10 9
14 14 C 1.40144 * 119.99567 * 185.52891 * 13 11 10
15 15 C 1.38298 * 120.02580 * 24.82415 * 14 13 11
16 16 C 1.39689 * 119.83834 * 179.97438 * 15 14 13
17 17 C 1.47619 * 120.06188 * 180.02562 * 16 15 14
18 18 N 1.34772 * 120.00079 * 180.02562 * 17 16 15
19 19 O 1.21585 * 119.99655 * 359.97438 * 17 16 15
20 20 C 1.39715 * 119.87427 * 359.97438 * 16 15 14
21 21 C 1.37788 * 120.04002 * 359.73044 * 20 16 15
22 22 C 1.38816 * 120.16096 * 0.54547 * 21 20 16
23 23 O 1.35782 * 119.93860 * 179.72610 * 22 21 20
24 24 C 1.42908 * 116.99953 * 359.72615 * 23 22 21
25 25 C 1.52997 * 109.47256 * 180.02562 * 24 23 22
26 26 F 1.39905 * 109.47072 * 300.00134 * 25 24 23
27 27 F 1.39904 * 109.47090 * 59.99552 * 25 24 23
28 28 H 0.97003 * 119.99815 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.47033 * 59.99245 * 9 7 2
30 30 H 1.09003 * 109.46833 * 299.99608 * 9 7 2
31 31 H 1.09000 * 109.47250 * 59.99888 * 10 9 7
32 32 H 1.09003 * 109.47248 * 299.99865 * 10 9 7
33 33 H 0.97000 * 119.99999 * 5.52398 * 13 11 10
34 34 H 1.08005 * 120.07664 * 359.96008 * 15 14 13
35 35 H 0.97000 * 119.99744 * 0.02562 * 18 17 16
36 36 H 0.96996 * 120.00288 * 179.97438 * 18 17 16
37 37 H 1.08008 * 119.98288 * 179.97438 * 20 16 15
38 38 H 1.08000 * 119.92110 * 180.29323 * 21 20 16
39 39 H 1.08997 * 109.46922 * 59.99919 * 24 23 22
40 40 H 1.08994 * 109.47038 * 300.00049 * 24 23 22
41 41 H 1.08999 * 109.47327 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0462 -1.4002
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0001
9 6 1.2509 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4915 -4.9672 0.0012
12 8 0.2786 -4.9671 0.0011
13 7 2.1654 -6.1345 0.0018
14 6 1.4694 -7.3453 -0.1145
15 6 0.2288 -7.3746 -0.7250
16 6 -0.4612 -8.5837 -0.8394
17 6 -1.7855 -8.6207 -1.4906
18 7 -2.4504 -9.7879 -1.5998
19 8 -2.2767 -7.5980 -1.9276
20 6 0.1048 -9.7582 -0.3372
21 6 1.3439 -9.7242 0.2647
22 6 2.0285 -8.5226 0.3843
23 8 3.2467 -8.4934 0.9832
24 6 3.7594 -9.7347 1.4716
25 6 5.1310 -9.5044 2.1093
26 9 6.0081 -8.9815 1.1530
27 9 5.0061 -8.6015 3.1706
28 1 -0.4850 0.8401 -0.0004
29 1 0.6245 -2.5571 -0.8896
30 1 0.6240 -2.5568 0.8904
31 1 2.8717 -3.6044 0.8905
32 1 2.8717 -3.6044 -0.8895
33 1 3.1320 -6.1364 0.0827
34 1 -0.2055 -6.4646 -1.1122
35 1 -2.0589 -10.6036 -1.2501
36 1 -3.3207 -9.8122 -2.0274
37 1 -0.4273 -10.6940 -0.4243
38 1 1.7817 -10.6341 0.6480
39 1 3.8563 -10.4383 0.6447
40 1 3.0763 -10.1418 2.2169
41 1 5.5218 -10.4511 2.4822
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000291464995.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:25
Heat of formation + Delta-G solvation = -223.379673 kcal
Electronic energy + Delta-G solvation = -29133.063211 eV
Core-core repulsion = 24454.516205 eV
Total energy + Delta-G solvation = -4678.547006 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.122 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-49.83745 -47.90158 -42.08026 -40.69711 -40.37581 -38.14688 -36.03094 -35.59730
-34.71864 -33.16657 -31.91366 -31.30532 -30.12967 -27.72714 -25.50934 -24.72631
-24.06048 -22.82071 -21.68677 -21.21090 -19.96162 -19.12325 -18.88837 -18.42172
-18.14856 -17.97546 -17.79139 -17.47503 -17.02705 -16.88456 -16.49353 -16.46535
-15.88419 -15.82798 -15.38811 -15.26789 -14.83303 -14.78594 -14.62162 -14.29759
-14.26583 -14.12107 -13.77295 -13.63905 -13.38023 -13.22729 -12.83500 -12.57162
-12.49159 -12.16648 -11.97410 -11.90240 -11.70207 -11.67845 -11.32964 -11.26315
-10.75593 -10.74257 -10.58783 -9.76386 -8.96518 -8.19601 -6.34473 -0.25483
0.15045 1.40468 1.44070 1.46408 1.55077 1.74184 1.83817 2.01024
2.41953 2.52101 2.76961 2.86578 3.13223 3.37020 3.57267 3.69577
3.76023 3.86912 3.91877 4.00983 4.12494 4.28153 4.33491 4.45873
4.46243 4.47263 4.69142 4.81614 5.00523 5.03147 5.22729 5.29610
5.46648 5.56506 5.57838 5.81840 5.86249 6.13526 6.15894 6.36171
6.44250 6.83185 7.12091 7.31123 7.35821 8.93307
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.007753 B = 0.003248 C = 0.002339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3610.676205 B = 8618.582115 C =11967.188505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.938 5.938
2 C -0.008 4.008
3 Si 0.977 3.023
4 H -0.271 1.271
5 H -0.285 1.285
6 H -0.254 1.254
7 C -0.544 4.544
8 H 0.077 0.923
9 C 0.042 3.958
10 C -0.116 4.116
11 C 0.508 3.492
12 O -0.560 6.560
13 N -0.657 5.657
14 C 0.095 3.905
15 C -0.073 4.073
16 C -0.173 4.173
17 C 0.558 3.442
18 N -0.822 5.822
19 O -0.599 6.599
20 C -0.042 4.042
21 C -0.180 4.180
22 C 0.132 3.868
23 O -0.323 6.323
24 C -0.008 4.008
25 C 0.260 3.740
26 F -0.219 7.219
27 F -0.222 7.222
28 H 0.263 0.737
29 H -0.018 1.018
30 H -0.016 1.016
31 H 0.109 0.891
32 H 0.109 0.891
33 H 0.427 0.573
34 H 0.115 0.885
35 H 0.420 0.580
36 H 0.413 0.587
37 H 0.184 0.816
38 H 0.194 0.806
39 H 0.132 0.868
40 H 0.125 0.875
41 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.262 -36.059 3.310 37.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.206 4.206
3 Si 0.801 3.199
4 H -0.197 1.197
5 H -0.211 1.211
6 H -0.178 1.178
7 C -0.582 4.582
8 H 0.096 0.904
9 C 0.004 3.996
10 C -0.155 4.155
11 C 0.298 3.702
12 O -0.437 6.437
13 N -0.303 5.303
14 C 0.000 4.000
15 C -0.095 4.095
16 C -0.177 4.177
17 C 0.345 3.655
18 N -0.387 5.387
19 O -0.481 6.481
20 C -0.061 4.061
21 C -0.198 4.198
22 C 0.084 3.916
23 O -0.236 6.236
24 C -0.083 4.083
25 C 0.208 3.792
26 F -0.200 7.200
27 F -0.204 7.204
28 H 0.072 0.928
29 H 0.000 1.000
30 H 0.002 0.998
31 H 0.127 0.873
32 H 0.127 0.873
33 H 0.265 0.735
34 H 0.133 0.867
35 H 0.254 0.746
36 H 0.245 0.755
37 H 0.201 0.799
38 H 0.211 0.789
39 H 0.149 0.851
40 H 0.143 0.857
41 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 9.294 -34.986 3.134 36.335
hybrid contribution -0.062 1.256 -0.128 1.264
sum 9.232 -33.731 3.006 35.100
Atomic orbital electron populations
1.70198 1.08410 1.27868 1.51334 1.26184 0.95740 1.04105 0.94524
0.85271 0.78646 0.77463 0.78557 1.19660 1.21074 1.17771 1.21690
0.94034 0.91441 1.51018 0.90440 1.18697 0.93637 0.92422 0.94802
1.21665 0.99391 0.89218 1.05267 1.21665 0.88065 0.86540 0.73938
1.90686 1.16345 1.87803 1.48916 1.43400 1.11478 1.03182 1.72208
1.17246 0.94504 0.85139 1.03151 1.21212 0.93446 0.99061 0.95742
1.19710 0.96023 0.94689 1.07286 1.18445 0.85364 0.83753 0.77922
1.43414 1.23578 1.09227 1.62494 1.90870 1.70228 1.35887 1.51120
1.21466 0.94484 0.96974 0.93225 1.21476 0.96418 0.96787 1.05123
1.18877 0.86017 0.93086 0.93628 1.86042 1.30701 1.35185 1.71687
1.24618 0.94770 0.86095 1.02795 1.22845 0.88022 0.91780 0.76581
1.93000 1.71700 1.89539 1.65804 1.93007 1.96499 1.72453 1.58406
0.92827 0.99987 0.99802 0.87298 0.87287 0.73459 0.86698 0.74631
0.75526 0.79866 0.78893 0.85063 0.85712 0.79601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -61.99 13.29 21.45 0.28 -61.70 16
2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16
3 Si 0.98 46.03 29.54 68.60 2.03 48.05 16
4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
6 H -0.25 -11.07 7.11 99.48 0.71 -10.37 16
7 C -0.54 -32.34 9.11 25.60 0.23 -32.11 16
8 H 0.08 4.18 7.74 -2.91 -0.02 4.16 16
9 C 0.04 2.48 4.26 29.85 0.13 2.61 16
10 C -0.12 -5.04 5.64 29.85 0.17 -4.87 16
11 C 0.51 21.99 7.63 87.66 0.67 22.66 16
12 O -0.56 -30.03 13.15 -3.08 -0.04 -30.07 16
13 N -0.66 -21.68 5.29 -303.24 -1.60 -23.28 16
14 C 0.09 2.91 6.44 38.14 0.25 3.15 16
15 C -0.07 -2.60 8.26 22.63 0.19 -2.42 16
16 C -0.17 -4.49 5.87 -20.09 -0.12 -4.61 16
17 C 0.56 15.67 8.04 86.72 0.70 16.36 16
18 N -0.82 -11.35 8.82 -175.76 -1.55 -12.90 16
19 O -0.60 -25.06 17.17 -3.98 -0.07 -25.13 16
20 C -0.04 -0.54 9.53 22.52 0.21 -0.32 16
21 C -0.18 -1.95 9.01 22.30 0.20 -1.75 16
22 C 0.13 2.64 6.71 22.72 0.15 2.79 16
23 O -0.32 -5.53 9.42 -91.11 -0.86 -6.39 16
24 C -0.01 -0.04 4.96 71.98 0.36 0.32 16
25 C 0.26 1.83 5.63 71.98 0.41 2.24 16
26 F -0.22 -3.21 17.28 44.97 0.78 -2.43 16
27 F -0.22 -3.61 17.28 44.97 0.78 -2.83 16
28 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16
29 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16
30 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16
31 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16
32 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16
33 H 0.43 11.35 8.34 -92.71 -0.77 10.58 16
34 H 0.12 5.44 5.36 -2.91 -0.02 5.43 16
35 H 0.42 1.71 6.85 -92.71 -0.63 1.08 16
36 H 0.41 4.90 8.93 -92.71 -0.83 4.08 16
37 H 0.18 0.26 6.39 -2.91 -0.02 0.24 16
38 H 0.19 -0.09 6.27 -2.91 -0.02 -0.10 16
39 H 0.13 -0.23 7.64 -2.39 -0.02 -0.25 16
40 H 0.13 -0.04 7.66 -2.39 -0.02 -0.06 16
41 H 0.19 -0.80 8.14 -2.39 -0.02 -0.82 16
Total: -1.00 -104.06 363.23 2.65 -101.41
By element:
Atomic # 1 Polarization: 12.35 SS G_CDS: -1.09 Total: 11.26 kcal
Atomic # 6 Polarization: 0.02 SS G_CDS: 4.00 Total: 4.02 kcal
Atomic # 7 Polarization: -95.02 SS G_CDS: -2.87 Total: -97.89 kcal
Atomic # 8 Polarization: -60.62 SS G_CDS: -0.97 Total: -61.59 kcal
Atomic # 9 Polarization: -6.82 SS G_CDS: 1.55 Total: -5.26 kcal
Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal
Total: -104.06 2.65 -101.41 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000291464995.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.973 kcal
(2) G-P(sol) polarization free energy of solvation -104.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -223.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds