Wall clock time and date at job start Sat Apr 11 2020 06:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86805 * 120.00127 * 2 1
4 4 H 1.48502 * 109.47293 * 270.00323 * 3 2 1
5 5 H 1.48506 * 109.46782 * 29.99953 * 3 2 1
6 6 H 1.48498 * 109.47356 * 149.99731 * 3 2 1
7 7 C 1.37875 * 120.00150 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00234 * 0.02562 * 7 2 1
9 9 C 1.50701 * 120.00048 * 179.97438 * 7 2 1
10 10 C 1.53005 * 109.47050 * 179.97438 * 9 7 2
11 11 S 1.81404 * 109.47008 * 180.02562 * 10 9 7
12 12 O 1.42097 * 110.54447 * 68.37249 * 11 10 9
13 13 O 1.42106 * 110.53922 * 291.62507 * 11 10 9
14 14 N 1.65598 * 104.44760 * 180.02562 * 11 10 9
15 15 C 1.46498 * 119.99957 * 65.00094 * 14 11 10
16 16 H 1.09000 * 110.64747 * 333.29598 * 15 14 11
17 17 C 1.54600 * 110.72715 * 96.45438 * 15 14 11
18 18 C 1.53984 * 105.14188 * 140.49141 * 17 15 14
19 19 N 1.47904 * 107.06168 * 1.22367 * 18 17 15
20 20 C 1.39841 * 111.00303 * 214.15704 * 19 18 17
21 21 C 1.38832 * 120.08064 * 125.37495 * 20 19 18
22 22 C 1.38147 * 119.94894 * 179.97438 * 21 20 19
23 23 C 1.38271 * 120.11433 * 359.97438 * 22 21 20
24 24 C 1.38290 * 120.16186 * 0.02562 * 23 22 21
25 25 C 1.38286 * 120.04763 * 359.97438 * 24 23 22
26 26 F 1.35102 * 120.05672 * 180.02562 * 25 24 23
27 27 C 1.48531 * 105.81719 * 334.67286 * 19 18 17
28 28 H 0.97006 * 120.00158 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.46864 * 60.00041 * 9 7 2
30 30 H 1.08997 * 109.47357 * 299.99909 * 9 7 2
31 31 H 1.08999 * 109.46686 * 60.00441 * 10 9 7
32 32 H 1.08997 * 109.47034 * 300.00190 * 10 9 7
33 33 H 0.96996 * 119.99742 * 244.99232 * 14 11 10
34 34 H 1.08997 * 110.30500 * 21.57298 * 17 15 14
35 35 H 1.09004 * 110.38644 * 259.45388 * 17 15 14
36 36 H 1.08999 * 109.92390 * 241.87159 * 18 17 15
37 37 H 1.08999 * 109.91864 * 120.57638 * 18 17 15
38 38 H 1.07999 * 120.02364 * 0.25103 * 21 20 19
39 39 H 1.07997 * 119.94339 * 179.97438 * 22 21 20
40 40 H 1.07999 * 119.92013 * 179.97438 * 23 22 21
41 41 H 1.07999 * 119.97959 * 179.97438 * 24 23 22
42 42 H 1.09000 * 110.66790 * 157.63850 * 27 19 18
43 43 H 1.09003 * 110.66342 * 280.76943 * 27 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1294 -0.0014
9 6 3.5115 -1.1940 -0.0011
10 6 4.0215 -2.6365 -0.0010
11 16 5.8356 -2.6365 -0.0009
12 8 6.3342 -2.1460 1.2360
13 8 6.3342 -2.1461 -1.2380
14 7 6.2488 -4.2401 -0.0015
15 6 5.9124 -5.0827 -1.1517
16 1 5.0385 -4.6913 -1.6725
17 6 7.1161 -5.2001 -2.1147
18 6 7.1118 -6.6657 -2.5871
19 7 5.9515 -7.3241 -1.9486
20 6 6.2350 -8.6606 -1.6506
21 6 6.0709 -9.1348 -0.3561
22 6 6.3513 -10.4558 -0.0648
23 6 6.7947 -11.3067 -1.0603
24 6 6.9598 -10.8393 -2.3513
25 6 6.6811 -9.5183 -2.6504
26 9 6.8419 -9.0616 -3.9117
27 6 5.6767 -6.5495 -0.7115
28 1 -0.4851 0.8401 -0.0004
29 1 3.8751 -0.6803 0.8889
30 1 3.8745 -0.6800 -0.8911
31 1 3.6579 -3.1505 -0.8908
32 1 3.6585 -3.1501 0.8892
33 1 6.7136 -4.6214 0.7596
34 1 8.0441 -4.9746 -1.5894
35 1 6.9899 -4.5284 -2.9638
36 1 8.0341 -7.1580 -2.2788
37 1 7.0111 -6.7059 -3.6717
38 1 5.7200 -8.4726 0.4216
39 1 6.2240 -10.8244 0.9423
40 1 7.0133 -12.3387 -0.8290
41 1 7.3067 -11.5064 -3.1266
42 1 4.6456 -6.6932 -0.3886
43 1 6.3716 -6.8299 0.0802
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000292145503.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:30
Heat of formation + Delta-G solvation = -78.741394 kcal
Electronic energy + Delta-G solvation = -27447.055119 eV
Core-core repulsion = 23340.993276 eV
Total energy + Delta-G solvation = -4106.061843 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.120 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-49.09997 -40.60869 -38.36898 -36.76292 -35.64913 -34.99569 -33.98503 -31.81450
-31.51567 -30.94952 -29.00278 -27.96915 -26.01858 -23.65138 -23.02258 -21.48514
-21.29396 -20.98720 -19.18145 -18.29357 -17.77915 -17.12622 -16.97264 -16.72016
-16.19791 -15.92986 -15.60407 -15.49289 -15.14484 -14.79560 -14.42578 -14.32352
-14.00236 -13.82161 -13.63141 -13.26144 -12.96613 -12.83213 -12.61444 -12.38980
-12.28193 -12.06452 -11.92941 -11.78903 -11.69796 -11.45999 -11.35113 -11.30300
-11.23626 -10.99598 -10.47811 -10.20747 -10.14720 -9.88832 -9.54277 -9.25139
-9.23750 -8.68144 -8.29410 -6.18276 -4.19839 0.57727 0.79505 0.81190
2.80704 3.13693 3.25259 3.32730 3.36409 3.48120 3.93084 3.98916
4.10081 4.26296 4.34115 4.42141 4.51044 4.58193 4.71740 4.80278
4.83501 4.89233 4.98091 5.05397 5.13389 5.17817 5.35076 5.41652
5.47172 5.49356 5.55083 5.60411 5.63946 5.79422 5.88452 5.98117
6.01846 6.23781 6.26011 6.36994 6.78039 6.78304 6.85555 6.93070
7.52435 8.34352 8.82727 9.41217 10.94049
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.019142 B = 0.002461 C = 0.002386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.374793 B =11372.991170 C =11734.414799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.072 3.928
3 Si 0.869 3.131
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.262 1.262
7 C -0.520 4.520
8 H 0.078 0.922
9 C -0.007 4.007
10 C -0.583 4.583
11 S 2.589 3.411
12 O -0.965 6.965
13 O -0.961 6.961
14 N -1.117 6.117
15 C 0.150 3.850
16 H 0.108 0.892
17 C -0.146 4.146
18 C 0.039 3.961
19 N -0.464 5.464
20 C 0.075 3.925
21 C -0.143 4.143
22 C -0.103 4.103
23 C -0.120 4.120
24 C -0.132 4.132
25 C 0.077 3.923
26 F -0.134 7.134
27 C 0.026 3.974
28 H 0.267 0.733
29 H 0.032 0.968
30 H 0.029 0.971
31 H 0.125 0.875
32 H 0.128 0.872
33 H 0.413 0.587
34 H 0.081 0.919
35 H 0.091 0.909
36 H 0.054 0.946
37 H 0.094 0.906
38 H 0.139 0.861
39 H 0.130 0.870
40 H 0.131 0.869
41 H 0.136 0.864
42 H 0.102 0.898
43 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.935 -22.683 -1.739 27.776
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.131 4.131
3 Si 0.695 3.305
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.186 1.186
7 C -0.559 4.559
8 H 0.096 0.904
9 C -0.046 4.046
10 C -0.716 4.716
11 S 2.686 3.314
12 O -0.956 6.956
13 O -0.951 6.951
14 N -0.873 5.873
15 C 0.041 3.959
16 H 0.125 0.875
17 C -0.186 4.186
18 C -0.087 4.087
19 N -0.179 5.179
20 C -0.024 4.024
21 C -0.163 4.163
22 C -0.122 4.122
23 C -0.139 4.139
24 C -0.151 4.151
25 C 0.055 3.945
26 F -0.113 7.113
27 C -0.102 4.102
28 H 0.076 0.924
29 H 0.051 0.949
30 H 0.047 0.953
31 H 0.143 0.857
32 H 0.146 0.854
33 H 0.247 0.753
34 H 0.100 0.900
35 H 0.110 0.890
36 H 0.073 0.927
37 H 0.112 0.888
38 H 0.157 0.843
39 H 0.148 0.852
40 H 0.149 0.851
41 H 0.154 0.846
42 H 0.120 0.880
43 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 15.889 -21.656 -2.325 26.960
hybrid contribution 0.437 0.268 0.515 0.726
sum 16.326 -21.388 -1.810 26.968
Atomic orbital electron populations
1.69879 1.06214 1.27281 1.49905 1.24986 0.94821 0.99173 0.94123
0.86928 0.80683 0.83709 0.79142 1.19649 1.20749 1.18634 1.20840
0.87777 0.94924 1.52364 0.90381 1.19410 0.99952 0.87362 0.97892
1.30303 1.20984 1.09321 1.10981 1.05699 0.79152 0.72289 0.74285
1.93568 1.79241 1.77574 1.45192 1.93565 1.78323 1.77756 1.45462
1.55841 1.74426 1.30106 1.26897 1.21557 0.97989 0.90322 0.86024
0.87458 1.22969 0.99431 0.95484 1.00710 1.23055 0.90537 0.93888
1.01180 1.61771 1.34653 0.99361 1.22125 1.19158 0.99188 0.91238
0.92807 1.21243 1.03462 0.97150 0.94475 1.21104 0.98279 0.93036
0.99771 1.20958 1.00617 1.00261 0.92054 1.21067 1.02059 0.93579
0.98395 1.17312 1.05271 0.92693 0.79194 1.91493 1.93453 1.89305
1.37009 1.23745 1.03411 0.92018 0.91007 0.92352 0.94936 0.95324
0.85685 0.85389 0.75324 0.90012 0.88993 0.92710 0.88785 0.84320
0.85201 0.85126 0.84632 0.87954 0.91193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16
2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
3 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16
4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16
7 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16
8 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16
9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16
10 C -0.58 -10.08 5.91 37.16 0.22 -9.86 16
11 S 2.59 40.82 5.41 -107.50 -0.58 40.24 16
12 O -0.97 -18.01 18.08 -57.54 -1.04 -19.05 16
13 O -0.96 -17.70 17.81 -57.54 -1.02 -18.73 16
14 N -1.12 -12.19 5.45 -3.31 -0.02 -12.20 16
15 C 0.15 1.54 3.47 -66.07 -0.23 1.31 16
16 H 0.11 1.12 7.25 -51.93 -0.38 0.74 16
17 C -0.15 -1.48 6.67 -25.38 -0.17 -1.65 16
18 C 0.04 0.37 5.41 -2.76 -0.01 0.36 16
19 N -0.46 -4.68 5.30 -167.09 -0.88 -5.57 16
20 C 0.08 0.73 5.45 -83.67 -0.46 0.27 16
21 C -0.14 -1.12 8.80 -39.39 -0.35 -1.47 16
22 C -0.10 -0.67 10.04 -39.60 -0.40 -1.07 16
23 C -0.12 -0.76 10.04 -39.55 -0.40 -1.16 16
24 C -0.13 -1.01 10.02 -39.54 -0.40 -1.41 16
25 C 0.08 0.76 6.92 -39.25 -0.27 0.48 16
26 F -0.13 -1.48 15.44 2.25 0.03 -1.44 16
27 C 0.03 0.23 4.82 -1.90 -0.01 0.22 16
28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
29 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16
30 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16
31 H 0.12 1.94 7.47 -51.92 -0.39 1.55 16
32 H 0.13 2.00 8.14 -51.93 -0.42 1.57 16
33 H 0.41 3.57 8.73 -34.46 -0.30 3.26 16
34 H 0.08 0.79 8.05 -51.93 -0.42 0.38 16
35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
36 H 0.05 0.50 7.68 -51.93 -0.40 0.10 16
37 H 0.09 0.92 7.46 -51.93 -0.39 0.53 16
38 H 0.14 0.89 5.95 -52.49 -0.31 0.58 16
39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16
40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16
41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16
42 H 0.10 0.82 8.13 -51.93 -0.42 0.40 16
43 H 0.07 0.50 6.50 -51.93 -0.34 0.16 16
LS Contribution 365.16 15.07 5.50 5.50
Total: -1.00 -35.17 365.16 -10.73 -45.89
By element:
Atomic # 1 Polarization: 7.56 SS G_CDS: -5.81 Total: 1.75 kcal
Atomic # 6 Polarization: -23.91 SS G_CDS: -3.01 Total: -26.92 kcal
Atomic # 7 Polarization: -43.73 SS G_CDS: -0.13 Total: -43.86 kcal
Atomic # 8 Polarization: -35.71 SS G_CDS: -2.07 Total: -37.78 kcal
Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.44 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal
Atomic # 16 Polarization: 40.82 SS G_CDS: -0.58 Total: 40.24 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -35.17 -10.73 -45.89 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292145503.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.847 kcal
(2) G-P(sol) polarization free energy of solvation -35.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.741 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds