Wall clock time and date at job start Sat Apr 11 2020 06:30:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86805 * 120.00127 * 2 1
4 4 H 1.48502 * 109.47293 * 270.00323 * 3 2 1
5 5 H 1.48506 * 109.46782 * 29.99953 * 3 2 1
6 6 H 1.48498 * 109.47356 * 149.99731 * 3 2 1
7 7 C 1.37875 * 120.00150 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00234 * 0.02562 * 7 2 1
9 9 C 1.50701 * 120.00048 * 179.97438 * 7 2 1
10 10 C 1.53005 * 109.47050 * 179.97438 * 9 7 2
11 11 S 1.81404 * 109.47008 * 180.02562 * 10 9 7
12 12 O 1.42097 * 110.54447 * 68.37249 * 11 10 9
13 13 O 1.42106 * 110.53922 * 291.62507 * 11 10 9
14 14 N 1.65598 * 104.44760 * 180.02562 * 11 10 9
15 15 C 1.46498 * 119.99957 * 65.00094 * 14 11 10
16 16 H 1.09000 * 110.64747 * 333.29598 * 15 14 11
17 17 C 1.54600 * 110.72715 * 96.45438 * 15 14 11
18 18 C 1.53984 * 105.14188 * 140.49141 * 17 15 14
19 19 N 1.47904 * 107.06168 * 1.22367 * 18 17 15
20 20 C 1.39841 * 111.00303 * 214.15704 * 19 18 17
21 21 C 1.38832 * 120.08064 * 125.37495 * 20 19 18
22 22 C 1.38147 * 119.94894 * 179.97438 * 21 20 19
23 23 C 1.38271 * 120.11433 * 359.97438 * 22 21 20
24 24 C 1.38290 * 120.16186 * 0.02562 * 23 22 21
25 25 C 1.38286 * 120.04763 * 359.97438 * 24 23 22
26 26 F 1.35102 * 120.05672 * 180.02562 * 25 24 23
27 27 C 1.48531 * 105.81719 * 334.67286 * 19 18 17
28 28 H 0.97006 * 120.00158 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.46864 * 60.00041 * 9 7 2
30 30 H 1.08997 * 109.47357 * 299.99909 * 9 7 2
31 31 H 1.08999 * 109.46686 * 60.00441 * 10 9 7
32 32 H 1.08997 * 109.47034 * 300.00190 * 10 9 7
33 33 H 0.96996 * 119.99742 * 244.99232 * 14 11 10
34 34 H 1.08997 * 110.30500 * 21.57298 * 17 15 14
35 35 H 1.09004 * 110.38644 * 259.45388 * 17 15 14
36 36 H 1.08999 * 109.92390 * 241.87159 * 18 17 15
37 37 H 1.08999 * 109.91864 * 120.57638 * 18 17 15
38 38 H 1.07999 * 120.02364 * 0.25103 * 21 20 19
39 39 H 1.07997 * 119.94339 * 179.97438 * 22 21 20
40 40 H 1.07999 * 119.92013 * 179.97438 * 23 22 21
41 41 H 1.07999 * 119.97959 * 179.97438 * 24 23 22
42 42 H 1.09000 * 110.66790 * 157.63850 * 27 19 18
43 43 H 1.09003 * 110.66342 * 280.76943 * 27 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0465 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1294 -0.0014
9 6 3.5115 -1.1940 -0.0011
10 6 4.0215 -2.6365 -0.0010
11 16 5.8356 -2.6365 -0.0009
12 8 6.3342 -2.1460 1.2360
13 8 6.3342 -2.1461 -1.2380
14 7 6.2488 -4.2401 -0.0015
15 6 5.9124 -5.0827 -1.1517
16 1 5.0385 -4.6913 -1.6725
17 6 7.1161 -5.2001 -2.1147
18 6 7.1118 -6.6657 -2.5871
19 7 5.9515 -7.3241 -1.9486
20 6 6.2350 -8.6606 -1.6506
21 6 6.0709 -9.1348 -0.3561
22 6 6.3513 -10.4558 -0.0648
23 6 6.7947 -11.3067 -1.0603
24 6 6.9598 -10.8393 -2.3513
25 6 6.6811 -9.5183 -2.6504
26 9 6.8419 -9.0616 -3.9117
27 6 5.6767 -6.5495 -0.7115
28 1 -0.4851 0.8401 -0.0004
29 1 3.8751 -0.6803 0.8889
30 1 3.8745 -0.6800 -0.8911
31 1 3.6579 -3.1505 -0.8908
32 1 3.6585 -3.1501 0.8892
33 1 6.7136 -4.6214 0.7596
34 1 8.0441 -4.9746 -1.5894
35 1 6.9899 -4.5284 -2.9638
36 1 8.0341 -7.1580 -2.2788
37 1 7.0111 -6.7059 -3.6717
38 1 5.7200 -8.4726 0.4216
39 1 6.2240 -10.8244 0.9423
40 1 7.0133 -12.3387 -0.8290
41 1 7.3067 -11.5064 -3.1266
42 1 4.6456 -6.6932 -0.3886
43 1 6.3716 -6.8299 0.0802
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000292145503.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:29
Heat of formation + Delta-G solvation = -104.908046 kcal
Electronic energy + Delta-G solvation = -27448.189790 eV
Core-core repulsion = 23340.993276 eV
Total energy + Delta-G solvation = -4107.196514 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.120 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-49.82538 -41.27815 -39.02005 -38.13956 -37.03647 -35.88376 -35.84315 -33.46479
-32.53615 -31.53585 -29.68668 -28.69187 -27.88349 -24.31060 -23.65718 -23.21372
-22.04374 -21.77704 -20.39256 -19.40884 -18.96269 -18.56068 -17.80132 -17.41478
-17.10178 -16.92805 -16.83203 -16.42757 -16.32760 -16.02770 -15.46247 -15.31878
-15.05544 -14.81093 -14.62185 -14.50788 -14.08603 -13.80090 -13.64013 -13.43218
-13.22515 -13.20346 -13.12468 -13.06605 -12.94989 -12.91284 -12.65281 -12.39365
-12.22662 -11.97288 -11.93042 -11.75654 -11.70180 -11.30557 -10.83685 -10.78984
-10.46081 -9.81007 -8.93176 -8.35686 -6.41266 -0.72707 0.21121 0.25879
1.32754 1.34586 1.44354 1.71115 2.30143 2.53740 2.72604 2.83556
2.98532 3.25816 3.30969 3.34730 3.54089 3.85035 3.88054 3.93590
4.02637 4.07369 4.12020 4.20524 4.28616 4.39516 4.42493 4.51486
4.58616 4.71119 4.74984 4.81847 4.89519 5.08774 5.09181 5.11540
5.11674 5.20029 5.31111 5.48619 5.50018 5.69021 5.70275 6.07765
6.16437 6.17732 6.65294 7.23179 8.79839
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.019142 B = 0.002461 C = 0.002386
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1462.374793 B =11372.991170 C =11734.414799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C 0.012 3.988
3 Si 0.925 3.075
4 H -0.262 1.262
5 H -0.275 1.275
6 H -0.248 1.248
7 C -0.526 4.526
8 H 0.050 0.950
9 C -0.018 4.018
10 C -0.590 4.590
11 S 2.624 3.376
12 O -0.991 6.991
13 O -0.986 6.986
14 N -1.095 6.095
15 C 0.141 3.859
16 H 0.105 0.895
17 C -0.146 4.146
18 C 0.046 3.954
19 N -0.479 5.479
20 C 0.056 3.944
21 C -0.149 4.149
22 C -0.101 4.101
23 C -0.117 4.117
24 C -0.137 4.137
25 C 0.047 3.953
26 F -0.150 7.150
27 C 0.031 3.969
28 H 0.269 0.731
29 H 0.033 0.967
30 H 0.031 0.969
31 H 0.139 0.861
32 H 0.144 0.856
33 H 0.428 0.572
34 H 0.087 0.913
35 H 0.082 0.918
36 H 0.058 0.942
37 H 0.085 0.915
38 H 0.153 0.847
39 H 0.157 0.843
40 H 0.159 0.841
41 H 0.149 0.851
42 H 0.111 0.889
43 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.640 -24.133 -0.654 29.900
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.186 4.186
3 Si 0.747 3.253
4 H -0.186 1.186
5 H -0.200 1.200
6 H -0.171 1.171
7 C -0.565 4.565
8 H 0.068 0.932
9 C -0.057 4.057
10 C -0.722 4.722
11 S 2.719 3.281
12 O -0.981 6.981
13 O -0.975 6.975
14 N -0.855 5.855
15 C 0.033 3.967
16 H 0.123 0.877
17 C -0.186 4.186
18 C -0.080 4.080
19 N -0.195 5.195
20 C -0.042 4.042
21 C -0.169 4.169
22 C -0.120 4.120
23 C -0.135 4.135
24 C -0.156 4.156
25 C 0.026 3.974
26 F -0.128 7.128
27 C -0.097 4.097
28 H 0.078 0.922
29 H 0.051 0.949
30 H 0.049 0.951
31 H 0.157 0.843
32 H 0.162 0.838
33 H 0.265 0.735
34 H 0.106 0.894
35 H 0.100 0.900
36 H 0.076 0.924
37 H 0.103 0.897
38 H 0.170 0.830
39 H 0.174 0.826
40 H 0.176 0.824
41 H 0.167 0.833
42 H 0.129 0.871
43 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 17.595 -23.117 -1.228 29.077
hybrid contribution -0.094 0.519 0.180 0.557
sum 17.501 -22.598 -1.047 28.602
Atomic orbital electron populations
1.70010 1.07916 1.28348 1.51785 1.25881 0.95624 1.03045 0.94072
0.86031 0.79973 0.79441 0.79823 1.18643 1.20049 1.17137 1.21190
0.90332 0.93836 1.51134 0.93174 1.19373 0.97136 0.91294 0.97896
1.30311 1.23173 1.06030 1.12663 1.04425 0.77664 0.72989 0.72991
1.93530 1.79276 1.78985 1.46309 1.93537 1.78274 1.79112 1.46614
1.55295 1.73906 1.28519 1.27829 1.21721 0.98052 0.91257 0.85685
0.87696 1.22951 0.99590 0.95657 1.00399 1.22943 0.90851 0.93507
1.00710 1.61775 1.34899 0.99933 1.22885 1.19328 1.00291 0.90966
0.93656 1.21490 1.03314 0.98144 0.93995 1.21484 0.96928 0.92460
1.01081 1.21342 0.99305 1.01592 0.91289 1.21338 1.01683 0.92952
0.99594 1.17692 1.07016 0.93861 0.78864 1.91446 1.93781 1.89606
1.38005 1.23770 1.04468 0.90341 0.91113 0.92171 0.94906 0.95056
0.84255 0.83798 0.73473 0.89444 0.89962 0.92364 0.89710 0.82955
0.82564 0.82358 0.83327 0.87123 0.89257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.62 13.96 21.45 0.30 -57.33 16
2 C 0.01 0.70 5.47 84.65 0.46 1.17 16
3 Si 0.92 43.50 27.47 68.60 1.88 45.38 16
4 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16
7 C -0.53 -29.26 9.66 25.60 0.25 -29.01 16
8 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16
9 C -0.02 -0.82 4.05 29.85 0.12 -0.69 16
10 C -0.59 -19.74 5.91 71.98 0.43 -19.31 16
11 S 2.62 78.36 5.41 -56.49 -0.31 78.05 16
12 O -0.99 -35.15 18.08 -127.65 -2.31 -37.46 16
13 O -0.99 -34.98 17.81 -127.65 -2.27 -37.26 16
14 N -1.10 -21.45 5.45 -164.38 -0.90 -22.35 16
15 C 0.14 2.67 3.47 46.20 0.16 2.83 16
16 H 0.11 2.06 7.25 -2.39 -0.02 2.04 16
17 C -0.15 -2.81 6.67 31.47 0.21 -2.60 16
18 C 0.05 0.85 5.41 86.44 0.47 1.32 16
19 N -0.48 -9.21 5.30 -682.54 -3.61 -12.83 16
20 C 0.06 1.03 5.45 38.21 0.21 1.24 16
21 C -0.15 -1.99 8.80 22.39 0.20 -1.79 16
22 C -0.10 -1.00 10.04 22.26 0.22 -0.78 16
23 C -0.12 -1.15 10.04 22.29 0.22 -0.93 16
24 C -0.14 -1.89 10.02 22.29 0.22 -1.67 16
25 C 0.05 0.90 6.92 22.48 0.16 1.06 16
26 F -0.15 -3.38 15.44 44.97 0.69 -2.68 16
27 C 0.03 0.47 4.82 86.65 0.42 0.89 16
28 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16
29 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16
30 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16
31 H 0.14 4.19 7.47 -2.39 -0.02 4.17 16
32 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16
33 H 0.43 6.14 8.73 -96.75 -0.84 5.29 16
34 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16
35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
36 H 0.06 1.03 7.68 -2.39 -0.02 1.01 16
37 H 0.08 1.71 7.46 -2.39 -0.02 1.69 16
38 H 0.15 1.50 5.95 -2.91 -0.02 1.48 16
39 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16
40 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16
41 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16
42 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16
43 H 0.09 1.00 6.50 -2.39 -0.02 0.99 16
Total: -1.00 -76.53 365.16 -2.64 -79.17
By element:
Atomic # 1 Polarization: 15.44 SS G_CDS: 0.14 Total: 15.58 kcal
Atomic # 6 Polarization: -52.03 SS G_CDS: 3.74 Total: -48.29 kcal
Atomic # 7 Polarization: -88.29 SS G_CDS: -4.21 Total: -92.51 kcal
Atomic # 8 Polarization: -70.13 SS G_CDS: -4.58 Total: -74.72 kcal
Atomic # 9 Polarization: -3.38 SS G_CDS: 0.69 Total: -2.68 kcal
Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal
Atomic # 16 Polarization: 78.36 SS G_CDS: -0.31 Total: 78.05 kcal
Total: -76.53 -2.64 -79.17 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000292145503.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.741 kcal
(2) G-P(sol) polarization free energy of solvation -76.529 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.270 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.638 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds