Wall clock time and date at job start Sat Apr 11 2020 06:29:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31576 * 1
3 3 Si 1.86799 * 120.00305 * 2 1
4 4 H 1.48501 * 109.47314 * 270.00342 * 3 2 1
5 5 H 1.48500 * 109.46806 * 29.99969 * 3 2 1
6 6 H 1.48493 * 109.47317 * 149.99691 * 3 2 1
7 7 C 1.38629 * 119.99957 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00315 * 179.97438 * 7 2 1
9 9 O 1.34819 * 119.99882 * 359.97438 * 7 2 1
10 10 C 1.35787 * 116.99825 * 184.86346 * 9 7 2
11 11 C 1.38902 * 119.99331 * 173.22996 * 10 9 7
12 12 C 1.38016 * 119.99741 * 180.23014 * 11 10 9
13 13 C 1.38907 * 119.99743 * 359.49824 * 12 11 10
14 14 N 1.40023 * 120.00442 * 180.26943 * 13 12 11
15 15 C 1.34779 * 120.00529 * 155.30642 * 14 13 12
16 16 O 1.21590 * 119.99409 * 8.59787 * 15 14 13
17 17 N 1.34773 * 120.00415 * 188.60333 * 15 14 13
18 18 C 1.46930 * 120.63071 * 8.14945 * 17 15 14
19 19 C 1.53620 * 108.54056 * 126.37121 * 18 17 15
20 20 C 1.53039 * 109.24224 * 54.85875 * 19 18 17
21 21 H 1.09002 * 109.46275 * 58.52949 * 20 19 18
22 22 O 1.42901 * 109.45224 * 178.49361 * 20 19 18
23 23 C 1.53044 * 109.54166 * 298.51149 * 20 19 18
24 24 F 1.39904 * 109.49405 * 301.41173 * 23 20 19
25 25 F 1.39892 * 109.50057 * 181.31287 * 23 20 19
26 26 C 1.46925 * 120.63126 * 188.43813 * 17 15 14
27 27 C 1.38920 * 119.99937 * 0.25186 * 13 12 11
28 28 C 1.38005 * 119.99607 * 0.02562 * 27 13 12
29 29 H 0.97002 * 119.99483 * 0.02562 * 1 2 3
30 30 H 1.07994 * 120.00540 * 359.97438 * 11 10 9
31 31 H 1.08001 * 119.99808 * 179.76836 * 12 11 10
32 32 H 0.97007 * 119.99960 * 335.31429 * 14 13 12
33 33 H 1.08992 * 109.58873 * 246.20596 * 18 17 15
34 34 H 1.09004 * 109.58177 * 6.63333 * 18 17 15
35 35 H 1.08998 * 109.64020 * 294.86895 * 19 18 17
36 36 H 1.08996 * 109.45790 * 174.73998 * 19 18 17
37 37 H 0.96700 * 113.99961 * 300.06628 * 22 20 19
38 38 H 1.08996 * 109.58566 * 353.36539 * 26 17 15
39 39 H 1.09000 * 109.58764 * 113.79464 * 26 17 15
40 40 H 1.08000 * 119.99865 * 180.02562 * 27 13 12
41 41 H 1.07999 * 119.99661 * 180.02562 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3158 0.0000 0.0000
3 14 2.2498 1.6177 0.0000
4 1 2.4973 2.0464 -1.4001
5 1 1.4473 2.6526 0.7000
6 1 3.5473 1.4401 0.7001
7 6 2.0089 -1.2006 0.0005
8 1 3.0889 -1.2006 0.0001
9 8 1.3348 -2.3681 0.0016
10 6 2.0706 -3.5047 0.1046
11 6 1.4363 -4.7314 0.2535
12 6 2.1842 -5.8862 0.3630
13 6 3.5710 -5.8227 0.3139
14 7 4.3298 -6.9947 0.4193
15 6 5.5709 -7.0435 -0.1038
16 8 6.0924 -6.0299 -0.5270
17 7 6.2339 -8.2156 -0.1578
18 6 5.5573 -9.4748 0.1820
19 6 5.7407 -10.4580 -0.9840
20 6 7.2333 -10.6088 -1.2866
21 1 7.7504 -10.9646 -0.3955
22 8 7.4111 -11.5493 -2.3476
23 6 7.8104 -9.2541 -1.7040
24 9 7.1259 -8.7818 -2.8291
25 9 9.1679 -9.3989 -2.0093
26 6 7.6488 -8.2579 -0.5516
27 6 4.2051 -4.5963 0.1598
28 6 3.4573 -3.4411 0.0561
29 1 -0.4849 0.8401 -0.0004
30 1 0.3580 -4.7812 0.2877
31 1 1.6911 -6.8396 0.4825
32 1 3.9621 -7.7718 0.8688
33 1 5.9961 -9.8924 1.0882
34 1 4.4952 -9.2876 0.3404
35 1 5.2270 -10.0787 -1.8673
36 1 5.3254 -11.4277 -0.7099
37 1 7.0679 -12.4320 -2.1523
38 1 7.9671 -7.2676 -0.8774
39 1 8.2546 -8.5783 0.2960
40 1 5.2833 -4.5470 0.1212
41 1 3.9502 -2.4877 -0.0641
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001645964372.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:46
Heat of formation + Delta-G solvation = -149.296867 kcal
Electronic energy + Delta-G solvation = -29735.742397 eV
Core-core repulsion = 25060.407863 eV
Total energy + Delta-G solvation = -4675.334534 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.122 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-49.22840 -47.24758 -40.87227 -39.05552 -38.33859 -36.85688 -36.05808 -34.18836
-32.21256 -31.89360 -30.90246 -30.15834 -27.88516 -25.71455 -25.10085 -24.03994
-22.52125 -21.98145 -21.13583 -19.85395 -18.96918 -18.23394 -17.90684 -17.54906
-17.31683 -17.10068 -16.82553 -16.48466 -15.42066 -15.31428 -14.87550 -14.47645
-14.41910 -14.27944 -14.24583 -13.94782 -13.62959 -13.60456 -13.54172 -13.50575
-13.13109 -12.85181 -12.61350 -12.54168 -12.38198 -12.18963 -11.74688 -11.60996
-11.54248 -11.06399 -11.02567 -10.79454 -10.77023 -10.41851 -9.90237 -9.76854
-9.23309 -9.10859 -8.67297 -8.18417 -6.88413 -6.41446 -3.98854 2.07869
2.15523 2.28999 2.88723 3.12487 3.17562 3.19692 3.22658 3.45555
3.49627 3.67947 3.80394 4.00886 4.09990 4.25896 4.46325 4.60203
4.66273 4.76542 4.85406 4.99476 5.00977 5.12136 5.15602 5.27756
5.49068 5.65731 5.74977 5.81072 6.09343 6.16178 6.34508 6.49021
6.73115 6.87854 6.96455 7.05601 7.11722 7.35763 7.48113 7.80195
7.83995 8.04071 8.44309 9.04614 9.74259 10.76613
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.024034 B = 0.002246 C = 0.002127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1164.717709 B =12464.820815 C =13162.559675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.864 5.864
2 C 0.038 3.962
3 Si 0.940 3.060
4 H -0.273 1.273
5 H -0.278 1.278
6 H -0.267 1.267
7 C -0.389 4.389
8 H 0.092 0.908
9 O -0.179 6.179
10 C 0.143 3.857
11 C -0.175 4.175
12 C -0.099 4.099
13 C 0.050 3.950
14 N -0.666 5.666
15 C 0.709 3.291
16 O -0.561 6.561
17 N -0.631 5.631
18 C 0.108 3.892
19 C -0.169 4.169
20 C 0.069 3.931
21 H 0.088 0.912
22 O -0.550 6.550
23 C 0.288 3.712
24 F -0.183 7.183
25 F -0.188 7.188
26 C 0.096 3.904
27 C -0.082 4.082
28 C -0.217 4.217
29 H 0.269 0.731
30 H 0.121 0.879
31 H 0.113 0.887
32 H 0.398 0.602
33 H 0.080 0.920
34 H 0.093 0.907
35 H 0.090 0.910
36 H 0.095 0.905
37 H 0.387 0.613
38 H 0.126 0.874
39 H 0.100 0.900
40 H 0.148 0.852
41 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.834 -25.077 2.757 28.305
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.500 5.500
2 C -0.165 4.165
3 Si 0.765 3.235
4 H -0.199 1.199
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.466 4.466
8 H 0.110 0.890
9 O -0.082 6.082
10 C 0.089 3.911
11 C -0.195 4.195
12 C -0.120 4.120
13 C -0.043 4.043
14 N -0.314 5.314
15 C 0.411 3.589
16 O -0.437 6.437
17 N -0.370 5.370
18 C -0.015 4.015
19 C -0.208 4.208
20 C 0.009 3.991
21 H 0.105 0.895
22 O -0.356 6.356
23 C 0.250 3.750
24 F -0.164 7.164
25 F -0.169 7.169
26 C -0.029 4.029
27 C -0.102 4.102
28 C -0.237 4.237
29 H 0.079 0.921
30 H 0.139 0.861
31 H 0.131 0.869
32 H 0.234 0.766
33 H 0.098 0.902
34 H 0.111 0.889
35 H 0.109 0.891
36 H 0.113 0.887
37 H 0.236 0.764
38 H 0.145 0.855
39 H 0.118 0.882
40 H 0.165 0.835
41 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 13.059 -23.584 2.086 27.039
hybrid contribution 0.050 -0.238 0.272 0.365
sum 13.109 -23.822 2.358 27.293
Atomic orbital electron populations
1.70049 1.05929 1.27590 1.46385 1.25273 0.95844 0.98803 0.96629
0.85718 0.78944 0.80092 0.78741 1.19884 1.20302 1.19160 1.21333
0.91843 0.80833 1.52554 0.89043 1.83970 1.34228 1.11386 1.78621
1.19432 0.90353 0.88153 0.93190 1.19950 0.99413 0.89883 1.10279
1.20219 0.91036 0.97488 1.03257 1.17144 0.89553 0.84645 1.12977
1.42380 1.14696 1.15563 1.58714 1.15750 0.81340 0.82968 0.78826
1.90846 1.67557 1.32070 1.53226 1.47110 1.10845 1.05967 1.73106
1.21812 0.98804 0.83775 0.97146 1.22775 0.95831 1.01358 1.00826
1.22741 0.96294 0.88630 0.91425 0.89467 1.86617 1.84263 1.23826
1.40942 1.21460 0.74706 0.93993 0.84792 1.93070 1.79250 1.89616
1.54424 1.93037 1.33282 1.96540 1.94072 1.22302 0.82969 1.02070
0.95549 1.21442 1.01421 0.89922 0.97425 1.21171 0.93516 0.98906
1.10100 0.92090 0.86062 0.86892 0.76562 0.90189 0.88883 0.89113
0.88652 0.76448 0.85540 0.88155 0.83524 0.85234
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16
2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
3 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16
4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
7 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16
8 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16
9 O -0.18 -5.13 9.76 -0.03 0.00 -5.13 16
10 C 0.14 3.48 6.64 -39.09 -0.26 3.22 16
11 C -0.18 -3.62 9.99 -39.42 -0.39 -4.01 16
12 C -0.10 -1.69 9.93 -39.42 -0.39 -2.08 16
13 C 0.05 0.87 6.48 -83.61 -0.54 0.33 16
14 N -0.67 -8.74 5.16 -14.18 -0.07 -8.82 16
15 C 0.71 9.94 8.19 -86.92 -0.71 9.23 16
16 O -0.56 -10.24 12.58 5.29 0.07 -10.17 16
17 N -0.63 -6.04 2.95 -178.24 -0.53 -6.56 16
18 C 0.11 0.56 6.32 -3.49 -0.02 0.53 16
19 C -0.17 -0.84 5.60 -26.39 -0.15 -0.99 16
20 C 0.07 0.44 3.00 -26.69 -0.08 0.36 16
21 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
22 O -0.55 -4.03 13.21 -35.23 -0.47 -4.49 16
23 C 0.29 2.88 1.84 -26.61 -0.05 2.83 16
24 F -0.18 -2.51 16.42 2.25 0.04 -2.48 16
25 F -0.19 -2.11 16.99 2.25 0.04 -2.08 16
26 C 0.10 0.87 5.92 -3.71 -0.02 0.85 16
27 C -0.08 -1.68 8.86 -39.41 -0.35 -2.02 16
28 C -0.22 -4.95 9.15 -39.42 -0.36 -5.31 16
29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16
30 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16
31 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16
32 H 0.40 3.58 6.54 -40.82 -0.27 3.32 16
33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.09 0.40 5.89 -51.93 -0.31 0.09 16
35 H 0.09 0.70 7.73 -51.93 -0.40 0.29 16
36 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16
37 H 0.39 0.80 9.08 45.56 0.41 1.21 16
38 H 0.13 1.42 7.00 -51.93 -0.36 1.06 16
39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.15 3.02 5.31 -52.50 -0.28 2.74 16
41 H 0.13 2.99 5.65 -52.49 -0.30 2.70 16
LS Contribution 347.91 15.07 5.24 5.24
Total: -1.00 -37.09 347.91 -6.52 -43.61
By element:
Atomic # 1 Polarization: 10.05 SS G_CDS: -3.44 Total: 6.61 kcal
Atomic # 6 Polarization: -3.71 SS G_CDS: -3.13 Total: -6.85 kcal
Atomic # 7 Polarization: -40.32 SS G_CDS: 0.16 Total: -40.16 kcal
Atomic # 8 Polarization: -19.40 SS G_CDS: -0.40 Total: -19.80 kcal
Atomic # 9 Polarization: -4.63 SS G_CDS: 0.08 Total: -4.55 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -37.09 -6.52 -43.61 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001645964372.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.691 kcal
(2) G-P(sol) polarization free energy of solvation -37.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.776 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -149.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds