Wall clock time and date at job start Sat Apr 11 2020 06:29:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31576 * 1
3 3 Si 1.86799 * 120.00305 * 2 1
4 4 H 1.48501 * 109.47314 * 270.00342 * 3 2 1
5 5 H 1.48500 * 109.46806 * 29.99969 * 3 2 1
6 6 H 1.48493 * 109.47317 * 149.99691 * 3 2 1
7 7 C 1.38629 * 119.99957 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00315 * 179.97438 * 7 2 1
9 9 O 1.34819 * 119.99882 * 359.97438 * 7 2 1
10 10 C 1.35787 * 116.99825 * 184.86346 * 9 7 2
11 11 C 1.38902 * 119.99331 * 173.22996 * 10 9 7
12 12 C 1.38016 * 119.99741 * 180.23014 * 11 10 9
13 13 C 1.38907 * 119.99743 * 359.49824 * 12 11 10
14 14 N 1.40023 * 120.00442 * 180.26943 * 13 12 11
15 15 C 1.34779 * 120.00529 * 155.30642 * 14 13 12
16 16 O 1.21590 * 119.99409 * 8.59787 * 15 14 13
17 17 N 1.34773 * 120.00415 * 188.60333 * 15 14 13
18 18 C 1.46930 * 120.63071 * 8.14945 * 17 15 14
19 19 C 1.53620 * 108.54056 * 126.37121 * 18 17 15
20 20 C 1.53039 * 109.24224 * 54.85875 * 19 18 17
21 21 H 1.09002 * 109.46275 * 58.52949 * 20 19 18
22 22 O 1.42901 * 109.45224 * 178.49361 * 20 19 18
23 23 C 1.53044 * 109.54166 * 298.51149 * 20 19 18
24 24 F 1.39904 * 109.49405 * 301.41173 * 23 20 19
25 25 F 1.39892 * 109.50057 * 181.31287 * 23 20 19
26 26 C 1.46925 * 120.63126 * 188.43813 * 17 15 14
27 27 C 1.38920 * 119.99937 * 0.25186 * 13 12 11
28 28 C 1.38005 * 119.99607 * 0.02562 * 27 13 12
29 29 H 0.97002 * 119.99483 * 0.02562 * 1 2 3
30 30 H 1.07994 * 120.00540 * 359.97438 * 11 10 9
31 31 H 1.08001 * 119.99808 * 179.76836 * 12 11 10
32 32 H 0.97007 * 119.99960 * 335.31429 * 14 13 12
33 33 H 1.08992 * 109.58873 * 246.20596 * 18 17 15
34 34 H 1.09004 * 109.58177 * 6.63333 * 18 17 15
35 35 H 1.08998 * 109.64020 * 294.86895 * 19 18 17
36 36 H 1.08996 * 109.45790 * 174.73998 * 19 18 17
37 37 H 0.96700 * 113.99961 * 300.06628 * 22 20 19
38 38 H 1.08996 * 109.58566 * 353.36539 * 26 17 15
39 39 H 1.09000 * 109.58764 * 113.79464 * 26 17 15
40 40 H 1.08000 * 119.99865 * 180.02562 * 27 13 12
41 41 H 1.07999 * 119.99661 * 180.02562 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3158 0.0000 0.0000
3 14 2.2498 1.6177 0.0000
4 1 2.4973 2.0464 -1.4001
5 1 1.4473 2.6526 0.7000
6 1 3.5473 1.4401 0.7001
7 6 2.0089 -1.2006 0.0005
8 1 3.0889 -1.2006 0.0001
9 8 1.3348 -2.3681 0.0016
10 6 2.0706 -3.5047 0.1046
11 6 1.4363 -4.7314 0.2535
12 6 2.1842 -5.8862 0.3630
13 6 3.5710 -5.8227 0.3139
14 7 4.3298 -6.9947 0.4193
15 6 5.5709 -7.0435 -0.1038
16 8 6.0924 -6.0299 -0.5270
17 7 6.2339 -8.2156 -0.1578
18 6 5.5573 -9.4748 0.1820
19 6 5.7407 -10.4580 -0.9840
20 6 7.2333 -10.6088 -1.2866
21 1 7.7504 -10.9646 -0.3955
22 8 7.4111 -11.5493 -2.3476
23 6 7.8104 -9.2541 -1.7040
24 9 7.1259 -8.7818 -2.8291
25 9 9.1679 -9.3989 -2.0093
26 6 7.6488 -8.2579 -0.5516
27 6 4.2051 -4.5963 0.1598
28 6 3.4573 -3.4411 0.0561
29 1 -0.4849 0.8401 -0.0004
30 1 0.3580 -4.7812 0.2877
31 1 1.6911 -6.8396 0.4825
32 1 3.9621 -7.7718 0.8688
33 1 5.9961 -9.8924 1.0882
34 1 4.4952 -9.2876 0.3404
35 1 5.2270 -10.0787 -1.8673
36 1 5.3254 -11.4277 -0.7099
37 1 7.0679 -12.4320 -2.1523
38 1 7.9671 -7.2676 -0.8774
39 1 8.2546 -8.5783 0.2960
40 1 5.2833 -4.5470 0.1212
41 1 3.9502 -2.4877 -0.0641
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001645964372.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:45
Heat of formation + Delta-G solvation = -178.449943 kcal
Electronic energy + Delta-G solvation = -29737.006570 eV
Core-core repulsion = 25060.407863 eV
Total energy + Delta-G solvation = -4676.598707 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.122 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-50.06543 -48.12320 -41.96934 -40.58652 -39.23003 -38.20924 -36.97652 -35.56775
-34.17531 -32.55134 -31.79455 -31.67281 -29.35776 -27.31465 -26.24961 -24.61316
-24.00960 -23.28660 -22.24711 -20.86365 -20.18265 -19.57888 -18.89792 -18.71777
-18.23675 -18.10052 -17.91821 -17.56822 -16.50022 -16.33542 -16.18726 -16.12663
-15.51442 -15.46702 -15.23218 -14.99793 -14.86066 -14.72036 -14.66420 -14.47911
-14.35950 -14.04403 -13.84477 -13.56293 -13.40590 -13.26101 -13.12602 -12.90297
-12.72522 -12.59716 -12.45507 -12.13144 -11.65462 -11.50309 -11.33617 -11.17273
-10.81258 -10.54929 -9.99113 -9.80896 -8.53409 -8.45756 -6.12324 0.54231
0.61706 1.22231 1.34692 1.42765 1.51594 1.90535 2.18412 2.42957
2.67939 2.84246 2.87486 3.00002 3.17675 3.25200 3.54837 3.58307
3.84032 4.00886 4.08844 4.14459 4.20589 4.24499 4.42144 4.45488
4.50347 4.52398 4.66074 4.72691 4.77524 5.05372 5.11168 5.14679
5.21523 5.34841 5.44686 5.59153 5.72643 5.77043 6.03966 6.20715
6.72184 6.77740 6.98847 7.35355 7.79185 8.76714
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.024034 B = 0.002246 C = 0.002127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1164.717709 B =12464.820815 C =13162.559675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.021 4.021
3 Si 1.015 2.985
4 H -0.265 1.265
5 H -0.267 1.267
6 H -0.257 1.257
7 C -0.412 4.412
8 H 0.095 0.905
9 O -0.229 6.229
10 C 0.101 3.899
11 C -0.176 4.176
12 C -0.081 4.081
13 C 0.081 3.919
14 N -0.652 5.652
15 C 0.703 3.297
16 O -0.611 6.611
17 N -0.621 5.621
18 C 0.098 3.902
19 C -0.161 4.161
20 C 0.075 3.925
21 H 0.126 0.874
22 O -0.577 6.577
23 C 0.270 3.730
24 F -0.213 7.213
25 F -0.200 7.200
26 C 0.096 3.904
27 C -0.098 4.098
28 C -0.227 4.227
29 H 0.273 0.727
30 H 0.130 0.870
31 H 0.171 0.829
32 H 0.424 0.576
33 H 0.123 0.877
34 H 0.107 0.893
35 H 0.058 0.942
36 H 0.139 0.861
37 H 0.409 0.591
38 H 0.094 0.906
39 H 0.142 0.858
40 H 0.144 0.856
41 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.865 -29.243 4.417 32.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.218 4.218
3 Si 0.834 3.166
4 H -0.190 1.190
5 H -0.192 1.192
6 H -0.181 1.181
7 C -0.489 4.489
8 H 0.112 0.888
9 O -0.136 6.136
10 C 0.050 3.950
11 C -0.196 4.196
12 C -0.101 4.101
13 C -0.013 4.013
14 N -0.302 5.302
15 C 0.405 3.595
16 O -0.490 6.490
17 N -0.358 5.358
18 C -0.022 4.022
19 C -0.200 4.200
20 C 0.015 3.985
21 H 0.143 0.857
22 O -0.388 6.388
23 C 0.232 3.768
24 F -0.195 7.195
25 F -0.181 7.181
26 C -0.029 4.029
27 C -0.118 4.118
28 C -0.247 4.247
29 H 0.082 0.918
30 H 0.148 0.852
31 H 0.189 0.811
32 H 0.265 0.735
33 H 0.141 0.859
34 H 0.125 0.875
35 H 0.077 0.923
36 H 0.157 0.843
37 H 0.262 0.738
38 H 0.113 0.887
39 H 0.160 0.840
40 H 0.162 0.838
41 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 14.121 -27.909 3.770 31.505
hybrid contribution -0.064 0.597 -0.267 0.657
sum 14.057 -27.313 3.503 30.917
Atomic orbital electron populations
1.70177 1.07780 1.28718 1.49002 1.26497 0.96872 1.02475 0.95984
0.84640 0.77789 0.74930 0.79196 1.18989 1.19155 1.18084 1.21741
0.92305 0.81694 1.53114 0.88761 1.83928 1.35517 1.12371 1.81776
1.19974 0.91097 0.88483 0.95439 1.20313 1.00352 0.89628 1.09299
1.20672 0.90481 0.98476 1.00466 1.17240 0.90302 0.85148 1.08636
1.42125 1.14228 1.14921 1.58902 1.15979 0.81307 0.83703 0.78483
1.90827 1.68635 1.34533 1.55026 1.47112 1.10934 1.06129 1.71644
1.22310 0.99596 0.81511 0.98825 1.22767 0.94547 1.03244 0.99425
1.22828 0.97320 0.86311 0.92058 0.85653 1.86566 1.84791 1.25460
1.41962 1.22119 0.74159 0.96711 0.83778 1.93005 1.79883 1.90279
1.56299 1.93005 1.34273 1.96703 1.94150 1.22404 0.83154 1.00574
0.96725 1.21523 1.01312 0.90584 0.98419 1.21142 0.93360 0.99342
1.10884 0.91820 0.85210 0.81115 0.73488 0.85879 0.87523 0.92315
0.84333 0.73846 0.88710 0.84007 0.83825 0.86980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -57.06 13.67 21.61 0.30 -56.77 16
2 C -0.02 -1.21 5.49 84.82 0.47 -0.74 16
3 Si 1.01 44.51 29.55 68.60 2.03 46.53 16
4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16
5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16
7 C -0.41 -24.86 9.48 67.91 0.64 -24.22 16
8 H 0.10 5.37 5.21 -2.91 -0.02 5.35 16
9 O -0.23 -14.03 9.76 -23.04 -0.22 -14.25 16
10 C 0.10 5.12 6.64 22.59 0.15 5.27 16
11 C -0.18 -7.17 9.99 22.38 0.22 -6.95 16
12 C -0.08 -2.46 9.93 22.38 0.22 -2.24 16
13 C 0.08 2.65 6.48 38.16 0.25 2.89 16
14 N -0.65 -14.66 5.16 -317.04 -1.64 -16.30 16
15 C 0.70 18.17 8.19 179.05 1.47 19.64 16
16 O -0.61 -22.30 12.58 -4.00 -0.05 -22.35 16
17 N -0.62 -9.83 2.95 -836.08 -2.46 -12.29 16
18 C 0.10 0.46 6.32 86.51 0.55 1.00 16
19 C -0.16 -0.82 5.60 30.82 0.17 -0.65 16
20 C 0.07 0.66 3.00 30.62 0.09 0.75 16
21 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16
22 O -0.58 -6.73 13.21 -148.98 -1.97 -8.70 16
23 C 0.27 4.94 1.84 30.67 0.06 5.00 16
24 F -0.21 -5.91 16.42 44.97 0.74 -5.17 16
25 F -0.20 -4.31 16.99 44.97 0.76 -3.55 16
26 C 0.10 1.54 5.92 86.36 0.51 2.06 16
27 C -0.10 -4.04 8.86 22.38 0.20 -3.84 16
28 C -0.23 -10.89 9.15 22.37 0.20 -10.68 16
29 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
30 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16
31 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16
32 H 0.42 5.19 6.54 -92.70 -0.61 4.59 16
33 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16
34 H 0.11 0.23 5.89 -2.38 -0.01 0.21 16
35 H 0.06 0.73 7.73 -2.39 -0.02 0.71 16
36 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16
37 H 0.41 0.13 9.08 -74.06 -0.67 -0.55 16
38 H 0.09 2.16 7.00 -2.39 -0.02 2.14 16
39 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.14 6.07 5.31 -3.06 -0.02 6.06 16
41 H 0.11 5.61 5.65 -2.91 -0.02 5.59 16
Total: -1.00 -91.28 347.91 2.53 -88.75
By element:
Atomic # 1 Polarization: 16.96 SS G_CDS: -0.15 Total: 16.81 kcal
Atomic # 6 Polarization: -17.92 SS G_CDS: 5.20 Total: -12.72 kcal
Atomic # 7 Polarization: -81.55 SS G_CDS: -3.80 Total: -85.36 kcal
Atomic # 8 Polarization: -43.06 SS G_CDS: -2.24 Total: -45.30 kcal
Atomic # 9 Polarization: -10.22 SS G_CDS: 1.50 Total: -8.72 kcal
Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal
Total: -91.28 2.53 -88.75 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001645964372.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -89.698 kcal
(2) G-P(sol) polarization free energy of solvation -91.284 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.752 kcal
(6) G-S(sol) free energy of system = (1) + (5) -178.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds