Wall clock time and date at job start Sat Apr 11 2020 06:29:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.46528 * 2 1
4 4 C 1.50696 * 109.46886 * 120.00027 * 2 1 3
5 5 H 1.08007 * 119.99587 * 120.00337 * 4 2 1
6 6 C 1.37869 * 120.00475 * 300.00064 * 4 2 1
7 7 N 1.31513 * 120.00057 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 120.00106 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.46749 * 179.97438 * 8 6 4
10 10 H 1.48492 * 109.47141 * 300.00181 * 8 6 4
11 11 H 1.48502 * 109.46845 * 60.00522 * 8 6 4
12 12 N 1.46501 * 109.47021 * 240.00529 * 2 1 3
13 13 C 1.34775 * 120.00134 * 85.00008 * 12 2 1
14 14 O 1.21356 * 120.00059 * 359.97438 * 13 12 2
15 15 C 1.49336 * 119.99710 * 179.97438 * 13 12 2
16 16 O 1.21389 * 120.00144 * 359.97438 * 15 13 12
17 17 N 1.34775 * 119.99710 * 179.97438 * 15 13 12
18 18 C 1.39878 * 119.99916 * 175.52657 * 17 15 13
19 19 C 1.38800 * 120.09787 * 34.66644 * 18 17 15
20 20 C 1.38155 * 119.98079 * 179.97438 * 19 18 17
21 21 C 1.38300 * 120.17882 * 0.02562 * 20 19 18
22 22 C 1.38249 * 120.18910 * 0.02562 * 21 20 19
23 23 C 1.38551 * 120.01944 * 359.67799 * 22 21 20
24 24 O 1.35958 * 120.08631 * 180.31465 * 23 22 21
25 25 C 1.42905 * 117.00073 * 0.28383 * 24 23 22
26 26 C 1.52997 * 109.46791 * 179.97438 * 25 24 23
27 27 F 1.39903 * 109.47499 * 299.99767 * 26 25 24
28 28 F 1.39902 * 109.47464 * 60.00238 * 26 25 24
29 29 H 1.09005 * 109.46907 * 60.00087 * 1 2 3
30 30 H 1.09002 * 109.47041 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47336 * 299.99520 * 1 2 3
32 32 H 0.97003 * 120.00660 * 179.97438 * 7 6 4
33 33 H 0.97003 * 119.99555 * 264.99628 * 12 2 1
34 34 H 0.97005 * 120.00262 * 355.53041 * 17 15 13
35 35 H 1.08004 * 120.00907 * 359.97438 * 19 18 17
36 36 H 1.08008 * 119.91503 * 179.97438 * 20 19 18
37 37 H 1.07995 * 119.91151 * 179.97438 * 21 20 19
38 38 H 1.08003 * 119.98620 * 180.02562 * 22 21 20
39 39 H 1.08994 * 109.46717 * 299.99825 * 25 24 23
40 40 H 1.09000 * 109.46832 * 59.99715 * 25 24 23
41 41 H 1.09005 * 109.46582 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6533 -1.5885 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9427 0.8295 2.6034
8 14 2.3213 -1.1206 4.0079
9 1 1.8269 -0.4201 5.2204
10 1 1.8258 -2.5204 4.0075
11 1 3.8063 -1.1211 4.0081
12 7 2.0183 -0.6905 -1.1963
13 6 2.1471 -0.0181 -2.3572
14 8 1.8580 1.1593 -2.4117
15 6 2.6454 -0.7219 -3.5764
16 8 2.9349 -1.8995 -3.5217
17 7 2.7736 -0.0496 -4.7374
18 6 3.3279 -0.6829 -5.8547
19 6 3.0992 -2.0343 -6.0736
20 6 3.6474 -2.6572 -7.1782
21 6 4.4247 -1.9379 -8.0676
22 6 4.6579 -0.5917 -7.8560
23 6 4.1071 0.0424 -6.7542
24 8 4.3303 1.3677 -6.5483
25 6 5.1378 2.0470 -7.5119
26 6 5.2759 3.5182 -7.1153
27 9 4.0089 4.1096 -7.0687
28 9 5.8787 3.6071 -5.8559
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5137 0.8900
32 1 0.7081 1.1607 3.4845
33 1 2.2491 -1.6317 -1.1527
34 1 2.4816 0.8734 -4.7982
35 1 2.4930 -2.5988 -5.3805
36 1 3.4692 -3.7090 -7.3472
37 1 4.8514 -2.4292 -8.9294
38 1 5.2651 -0.0330 -8.5529
39 1 6.1248 1.5860 -7.5485
40 1 4.6680 1.9780 -8.4930
41 1 5.8923 4.0362 -7.8501
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000123259694.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:52
Heat of formation + Delta-G solvation = -176.880492 kcal
Electronic energy + Delta-G solvation = -29320.515725 eV
Core-core repulsion = 24643.985075 eV
Total energy + Delta-G solvation = -4676.530650 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.122 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.23691 -47.26904 -41.06658 -39.87842 -38.30162 -37.41709 -35.35125 -34.56915
-32.39095 -31.26518 -30.46017 -29.32260 -28.96975 -25.33771 -24.91207 -24.32196
-22.34028 -22.29449 -20.70530 -19.59960 -19.14819 -18.47414 -17.84151 -17.61458
-17.20536 -16.91340 -16.33641 -16.02514 -15.72659 -15.61834 -15.26944 -14.96863
-14.87071 -14.33678 -14.13283 -14.07627 -13.74203 -13.60760 -13.36194 -13.20122
-12.92760 -12.69303 -12.45440 -12.01024 -11.85990 -11.77198 -11.53411 -11.40346
-11.16720 -11.03332 -10.97775 -10.77737 -10.49639 -10.34919 -10.25225 -9.13603
-9.05922 -8.85343 -8.59952 -8.12978 -8.05050 -6.15001 -4.24751 0.95894
1.13871 1.90303 2.43769 2.71878 3.27200 3.31736 3.32673 3.34148
3.48572 3.70359 3.76392 3.96939 4.09413 4.35291 4.36395 4.50774
4.57492 4.73156 4.86565 4.94722 5.11266 5.16440 5.18213 5.30556
5.54957 5.84587 5.99250 6.23473 6.33064 6.51427 6.74505 6.87209
6.94841 7.04742 7.14295 7.25315 7.43569 7.63854 7.80320 7.94443
8.07504 8.46723 8.64071 8.87746 9.42155 10.91041
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.002691 C = 0.002370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.686471 B =10401.507711 C =11810.656096
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.262 3.738
3 H 0.054 0.946
4 C -0.537 4.537
5 H 0.064 0.936
6 C 0.068 3.932
7 N -0.883 5.883
8 Si 0.905 3.095
9 H -0.285 1.285
10 H -0.275 1.275
11 H -0.275 1.275
12 N -0.668 5.668
13 C 0.495 3.505
14 O -0.532 6.532
15 C 0.509 3.491
16 O -0.509 6.509
17 N -0.642 5.642
18 C 0.126 3.874
19 C -0.085 4.085
20 C -0.134 4.134
21 C -0.097 4.097
22 C -0.192 4.192
23 C 0.102 3.898
24 O -0.301 6.301
25 C 0.007 3.993
26 C 0.273 3.727
27 F -0.196 7.196
28 F -0.194 7.194
29 H 0.016 0.984
30 H 0.030 0.970
31 H 0.094 0.906
32 H 0.266 0.734
33 H 0.402 0.598
34 H 0.426 0.574
35 H 0.150 0.850
36 H 0.129 0.871
37 H 0.126 0.874
38 H 0.130 0.870
39 H 0.094 0.906
40 H 0.094 0.906
41 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.565 -0.421 -25.736 27.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.161 3.839
3 H 0.072 0.928
4 C -0.576 4.576
5 H 0.082 0.918
6 C -0.136 4.136
7 N -0.521 5.521
8 Si 0.732 3.268
9 H -0.211 1.211
10 H -0.200 1.200
11 H -0.201 1.201
12 N -0.317 5.317
13 C 0.273 3.727
14 O -0.410 6.410
15 C 0.293 3.707
16 O -0.384 6.384
17 N -0.289 5.289
18 C 0.031 3.969
19 C -0.105 4.105
20 C -0.153 4.153
21 C -0.116 4.116
22 C -0.211 4.211
23 C 0.056 3.944
24 O -0.215 6.215
25 C -0.069 4.069
26 C 0.219 3.781
27 F -0.177 7.177
28 F -0.176 7.176
29 H 0.035 0.965
30 H 0.049 0.951
31 H 0.113 0.887
32 H 0.076 0.924
33 H 0.236 0.764
34 H 0.265 0.735
35 H 0.168 0.832
36 H 0.147 0.853
37 H 0.144 0.856
38 H 0.148 0.852
39 H 0.112 0.888
40 H 0.112 0.888
41 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 8.362 -0.116 -25.257 26.606
hybrid contribution 0.437 -0.404 0.648 0.879
sum 8.799 -0.520 -24.609 26.140
Atomic orbital electron populations
1.22100 0.97821 0.99542 1.01228 1.18973 0.91446 0.94168 0.79308
0.92778 1.21161 1.32848 1.13499 0.90057 0.91788 1.24873 0.94690
0.94927 0.99074 1.69883 1.35634 1.22375 1.24174 0.86448 0.79235
0.79596 0.81505 1.21090 1.20046 1.20081 1.46485 1.61447 1.14489
1.09303 1.19623 0.81220 0.87307 0.84518 1.90745 1.50452 1.15163
1.84631 1.20973 0.78066 0.87091 0.84616 1.90702 1.47431 1.15289
1.84943 1.43070 1.59978 1.17691 1.08209 1.17130 0.98629 0.92538
0.88593 1.21288 0.99357 0.92372 0.97470 1.21019 0.99251 1.00370
0.94615 1.20930 0.98177 0.93209 0.99267 1.20995 1.05205 0.96521
0.98417 1.18739 0.96721 0.82904 0.96066 1.86136 1.67516 1.19457
1.48376 1.24028 0.97639 0.91494 0.93779 1.22011 0.79861 0.92083
0.84146 1.93048 1.42527 1.85345 1.96786 1.93065 1.83086 1.96990
1.44418 0.96452 0.95098 0.88715 0.92391 0.76357 0.73535 0.83216
0.85268 0.85557 0.85182 0.88812 0.88832 0.85221
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16
2 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16
3 H 0.05 1.57 7.58 -51.93 -0.39 1.17 16
4 C -0.54 -14.41 8.73 -34.44 -0.30 -14.71 16
5 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16
6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16
7 N -0.88 -24.78 11.32 55.43 0.63 -24.15 16
8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16
9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16
10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
12 N -0.67 -14.72 5.06 -55.40 -0.28 -15.00 16
13 C 0.50 10.38 7.85 -11.64 -0.09 10.29 16
14 O -0.53 -12.37 16.14 5.49 0.09 -12.28 16
15 C 0.51 9.15 7.73 -11.64 -0.09 9.06 16
16 O -0.51 -9.40 13.89 5.46 0.08 -9.33 16
17 N -0.64 -10.02 5.18 -10.19 -0.05 -10.07 16
18 C 0.13 1.75 6.32 -83.56 -0.53 1.22 16
19 C -0.08 -1.09 8.70 -39.40 -0.34 -1.43 16
20 C -0.13 -1.33 10.04 -39.59 -0.40 -1.72 16
21 C -0.10 -0.82 10.04 -39.55 -0.40 -1.21 16
22 C -0.19 -1.69 9.04 -39.46 -0.36 -2.04 16
23 C 0.10 1.20 6.70 -39.05 -0.26 0.94 16
24 O -0.30 -3.49 9.58 -19.61 -0.19 -3.68 16
25 C 0.01 0.05 4.97 37.16 0.18 0.23 16
26 C 0.27 1.93 5.63 37.16 0.21 2.14 16
27 F -0.20 -2.03 17.28 2.25 0.04 -1.99 16
28 F -0.19 -2.16 17.28 2.25 0.04 -2.12 16
29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16
30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16
32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16
33 H 0.40 8.20 8.01 -40.82 -0.33 7.87 16
34 H 0.43 6.51 8.03 -40.82 -0.33 6.18 16
35 H 0.15 2.08 6.19 -52.48 -0.33 1.75 16
36 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16
37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16
38 H 0.13 0.72 6.30 -52.48 -0.33 0.39 16
39 H 0.09 0.43 7.65 -51.93 -0.40 0.03 16
40 H 0.09 0.38 7.68 -51.93 -0.40 -0.02 16
41 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16
LS Contribution 363.54 15.07 5.48 5.48
Total: -1.00 -32.96 363.54 -5.96 -38.92
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: -4.47 Total: 10.72 kcal
Atomic # 6 Polarization: 10.02 SS G_CDS: -2.30 Total: 7.72 kcal
Atomic # 7 Polarization: -49.51 SS G_CDS: 0.29 Total: -49.22 kcal
Atomic # 8 Polarization: -25.27 SS G_CDS: -0.02 Total: -25.29 kcal
Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.11 kcal
Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.96 -5.96 -38.92 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000123259694.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -137.956 kcal
(2) G-P(sol) polarization free energy of solvation -32.961 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.918 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal
(6) G-S(sol) free energy of system = (1) + (5) -176.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds