Wall clock time and date at job start Sat Apr 11 2020 06:29:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.46528 * 2 1
4 4 C 1.50696 * 109.46886 * 120.00027 * 2 1 3
5 5 H 1.08007 * 119.99587 * 120.00337 * 4 2 1
6 6 C 1.37869 * 120.00475 * 300.00064 * 4 2 1
7 7 N 1.31513 * 120.00057 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 120.00106 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.46749 * 179.97438 * 8 6 4
10 10 H 1.48492 * 109.47141 * 300.00181 * 8 6 4
11 11 H 1.48502 * 109.46845 * 60.00522 * 8 6 4
12 12 N 1.46501 * 109.47021 * 240.00529 * 2 1 3
13 13 C 1.34775 * 120.00134 * 85.00008 * 12 2 1
14 14 O 1.21356 * 120.00059 * 359.97438 * 13 12 2
15 15 C 1.49336 * 119.99710 * 179.97438 * 13 12 2
16 16 O 1.21389 * 120.00144 * 359.97438 * 15 13 12
17 17 N 1.34775 * 119.99710 * 179.97438 * 15 13 12
18 18 C 1.39878 * 119.99916 * 175.52657 * 17 15 13
19 19 C 1.38800 * 120.09787 * 34.66644 * 18 17 15
20 20 C 1.38155 * 119.98079 * 179.97438 * 19 18 17
21 21 C 1.38300 * 120.17882 * 0.02562 * 20 19 18
22 22 C 1.38249 * 120.18910 * 0.02562 * 21 20 19
23 23 C 1.38551 * 120.01944 * 359.67799 * 22 21 20
24 24 O 1.35958 * 120.08631 * 180.31465 * 23 22 21
25 25 C 1.42905 * 117.00073 * 0.28383 * 24 23 22
26 26 C 1.52997 * 109.46791 * 179.97438 * 25 24 23
27 27 F 1.39903 * 109.47499 * 299.99767 * 26 25 24
28 28 F 1.39902 * 109.47464 * 60.00238 * 26 25 24
29 29 H 1.09005 * 109.46907 * 60.00087 * 1 2 3
30 30 H 1.09002 * 109.47041 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47336 * 299.99520 * 1 2 3
32 32 H 0.97003 * 120.00660 * 179.97438 * 7 6 4
33 33 H 0.97003 * 119.99555 * 264.99628 * 12 2 1
34 34 H 0.97005 * 120.00262 * 355.53041 * 17 15 13
35 35 H 1.08004 * 120.00907 * 359.97438 * 19 18 17
36 36 H 1.08008 * 119.91503 * 179.97438 * 20 19 18
37 37 H 1.07995 * 119.91151 * 179.97438 * 21 20 19
38 38 H 1.08003 * 119.98620 * 180.02562 * 22 21 20
39 39 H 1.08994 * 109.46717 * 299.99825 * 25 24 23
40 40 H 1.09000 * 109.46832 * 59.99715 * 25 24 23
41 41 H 1.09005 * 109.46582 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7104 1.2304
5 1 2.6533 -1.5885 1.1313
6 6 1.6992 -0.2395 2.4827
7 7 0.9427 0.8295 2.6034
8 14 2.3213 -1.1206 4.0079
9 1 1.8269 -0.4201 5.2204
10 1 1.8258 -2.5204 4.0075
11 1 3.8063 -1.1211 4.0081
12 7 2.0183 -0.6905 -1.1963
13 6 2.1471 -0.0181 -2.3572
14 8 1.8580 1.1593 -2.4117
15 6 2.6454 -0.7219 -3.5764
16 8 2.9349 -1.8995 -3.5217
17 7 2.7736 -0.0496 -4.7374
18 6 3.3279 -0.6829 -5.8547
19 6 3.0992 -2.0343 -6.0736
20 6 3.6474 -2.6572 -7.1782
21 6 4.4247 -1.9379 -8.0676
22 6 4.6579 -0.5917 -7.8560
23 6 4.1071 0.0424 -6.7542
24 8 4.3303 1.3677 -6.5483
25 6 5.1378 2.0470 -7.5119
26 6 5.2759 3.5182 -7.1153
27 9 4.0089 4.1096 -7.0687
28 9 5.8787 3.6071 -5.8559
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5137 0.8900
32 1 0.7081 1.1607 3.4845
33 1 2.2491 -1.6317 -1.1527
34 1 2.4816 0.8734 -4.7982
35 1 2.4930 -2.5988 -5.3805
36 1 3.4692 -3.7090 -7.3472
37 1 4.8514 -2.4292 -8.9294
38 1 5.2651 -0.0330 -8.5529
39 1 6.1248 1.5860 -7.5485
40 1 4.6680 1.9780 -8.4930
41 1 5.8923 4.0362 -7.8501
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000123259694.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:29:51
Heat of formation + Delta-G solvation = -200.395926 kcal
Electronic energy + Delta-G solvation = -29321.535430 eV
Core-core repulsion = 24643.985075 eV
Total energy + Delta-G solvation = -4677.550356 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.122 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-49.89854 -47.96782 -42.22513 -41.05502 -39.75623 -38.35087 -37.08322 -35.96206
-34.36165 -31.88507 -31.39818 -31.01940 -29.96961 -27.40554 -26.34392 -25.03354
-23.55271 -23.03269 -22.27028 -21.25751 -20.32075 -19.55046 -18.66561 -18.47537
-18.17349 -17.85264 -17.77687 -17.24953 -17.14259 -16.90866 -16.55716 -16.20012
-15.87837 -15.68524 -15.26793 -15.12386 -14.83250 -14.81882 -14.46712 -14.33495
-14.24457 -13.80747 -13.72284 -13.41232 -13.10842 -12.94732 -12.88094 -12.74755
-12.71317 -12.34020 -12.28233 -12.15873 -12.13916 -11.92570 -11.54702 -11.19893
-10.70316 -10.61287 -10.02773 -9.68469 -8.99130 -8.21642 -6.39785 -0.07637
0.35862 0.56078 1.27737 1.45265 1.46948 1.55204 1.85998 2.09137
2.37943 2.68778 2.75462 2.83366 3.08904 3.31348 3.43706 3.50490
3.80937 3.94161 3.97307 4.16119 4.29984 4.39937 4.40554 4.46039
4.66723 4.69350 4.85571 4.98577 5.03481 5.19247 5.27122 5.35568
5.40769 5.53365 5.56954 5.71872 5.73767 5.92881 6.00597 6.22567
6.48098 6.61947 6.74195 7.03302 7.32507 8.84569
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.002691 C = 0.002370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.686471 B =10401.507711 C =11810.656096
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.268 3.732
3 H 0.012 0.988
4 C -0.556 4.556
5 H 0.071 0.929
6 C 0.020 3.980
7 N -0.913 5.913
8 Si 0.974 3.026
9 H -0.282 1.282
10 H -0.264 1.264
11 H -0.272 1.272
12 N -0.668 5.668
13 C 0.494 3.506
14 O -0.559 6.559
15 C 0.517 3.483
16 O -0.518 6.518
17 N -0.630 5.630
18 C 0.080 3.920
19 C -0.101 4.101
20 C -0.138 4.138
21 C -0.081 4.081
22 C -0.184 4.184
23 C 0.099 3.901
24 O -0.334 6.334
25 C -0.003 4.003
26 C 0.258 3.742
27 F -0.220 7.220
28 F -0.223 7.223
29 H 0.018 0.982
30 H 0.041 0.959
31 H 0.075 0.925
32 H 0.268 0.732
33 H 0.411 0.589
34 H 0.424 0.576
35 H 0.130 0.870
36 H 0.151 0.849
37 H 0.167 0.833
38 H 0.171 0.829
39 H 0.120 0.880
40 H 0.126 0.874
41 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.548 -1.796 -28.456 30.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.166 3.834
3 H 0.030 0.970
4 C -0.593 4.593
5 H 0.089 0.911
6 C -0.181 4.181
7 N -0.551 5.551
8 Si 0.798 3.202
9 H -0.207 1.207
10 H -0.189 1.189
11 H -0.197 1.197
12 N -0.318 5.318
13 C 0.274 3.726
14 O -0.439 6.439
15 C 0.299 3.701
16 O -0.394 6.394
17 N -0.276 5.276
18 C -0.013 4.013
19 C -0.121 4.121
20 C -0.157 4.157
21 C -0.100 4.100
22 C -0.203 4.203
23 C 0.053 3.947
24 O -0.248 6.248
25 C -0.078 4.078
26 C 0.206 3.794
27 F -0.201 7.201
28 F -0.205 7.205
29 H 0.037 0.963
30 H 0.061 0.939
31 H 0.093 0.907
32 H 0.078 0.922
33 H 0.247 0.753
34 H 0.262 0.738
35 H 0.147 0.853
36 H 0.169 0.831
37 H 0.184 0.816
38 H 0.188 0.812
39 H 0.138 0.862
40 H 0.144 0.856
41 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 10.362 -1.506 -28.038 29.929
hybrid contribution -0.117 0.087 1.291 1.299
sum 10.245 -1.419 -26.747 28.677
Atomic orbital electron populations
1.21926 0.97318 0.99900 1.00291 1.18632 0.91812 0.92307 0.80696
0.96994 1.21466 1.33268 1.13891 0.90721 0.91075 1.25760 0.94673
0.95540 1.02151 1.70017 1.36489 1.23638 1.24970 0.85364 0.78630
0.78716 0.77449 1.20731 1.18917 1.19679 1.46247 1.61821 1.14779
1.08933 1.20157 0.80206 0.87010 0.85240 1.90718 1.51405 1.16496
1.85288 1.20171 0.78771 0.86827 0.84339 1.90698 1.48434 1.15221
1.85006 1.42911 1.59246 1.17360 1.08115 1.17474 1.01326 0.93489
0.89035 1.21264 1.00165 0.92108 0.98597 1.21323 0.98980 1.01581
0.93801 1.21436 0.96140 0.93006 0.99374 1.21476 1.04330 0.96934
0.97581 1.18890 0.96389 0.83193 0.96272 1.86102 1.68543 1.19580
1.50585 1.24470 0.98650 0.90591 0.94099 1.22893 0.79400 0.93264
0.83888 1.92995 1.44462 1.85847 1.96843 1.93002 1.83501 1.97182
1.46808 0.96250 0.93939 0.90682 0.92240 0.75330 0.73787 0.85268
0.83132 0.81572 0.81168 0.86226 0.85631 0.79484
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.95 9.26 71.98 0.67 -6.28 16
2 C 0.27 14.30 2.56 44.24 0.11 14.41 16
3 H 0.01 0.74 7.58 -2.39 -0.02 0.73 16
4 C -0.56 -30.32 8.73 25.60 0.22 -30.10 16
5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16
6 C 0.02 1.06 5.30 84.65 0.45 1.51 16
7 N -0.91 -52.38 11.32 21.44 0.24 -52.14 16
8 Si 0.97 42.68 29.54 68.60 2.03 44.71 16
9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16
11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
12 N -0.67 -30.58 5.06 -447.56 -2.27 -32.84 16
13 C 0.49 21.73 7.85 87.23 0.68 22.42 16
14 O -0.56 -27.49 16.14 -3.27 -0.05 -27.54 16
15 C 0.52 19.38 7.73 87.23 0.67 20.05 16
16 O -0.52 -19.74 13.89 -3.37 -0.05 -19.78 16
17 N -0.63 -20.54 5.18 -304.49 -1.58 -22.11 16
18 C 0.08 2.23 6.32 38.26 0.24 2.47 16
19 C -0.10 -2.58 8.70 22.38 0.19 -2.38 16
20 C -0.14 -2.41 10.04 22.26 0.22 -2.18 16
21 C -0.08 -1.01 10.04 22.29 0.22 -0.78 16
22 C -0.18 -2.48 9.04 22.35 0.20 -2.28 16
23 C 0.10 2.17 6.70 22.62 0.15 2.32 16
24 O -0.33 -7.37 9.58 -93.08 -0.89 -8.26 16
25 C 0.00 -0.03 4.97 71.98 0.36 0.33 16
26 C 0.26 3.16 5.63 71.98 0.41 3.57 16
27 F -0.22 -4.45 17.28 44.97 0.78 -3.67 16
28 F -0.22 -4.89 17.28 44.97 0.78 -4.11 16
29 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16
30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16
31 H 0.07 4.15 6.07 -2.39 -0.01 4.13 16
32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16
33 H 0.41 17.23 8.01 -92.71 -0.74 16.49 16
34 H 0.42 13.79 8.03 -92.70 -0.74 13.04 16
35 H 0.13 3.73 6.19 -2.91 -0.02 3.71 16
36 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16
37 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16
38 H 0.17 0.85 6.30 -2.91 -0.02 0.83 16
39 H 0.12 0.59 7.65 -2.39 -0.02 0.57 16
40 H 0.13 0.45 7.68 -2.39 -0.02 0.44 16
41 H 0.19 0.05 8.14 -2.38 -0.02 0.03 16
Total: -1.00 -75.94 363.54 3.43 -72.51
By element:
Atomic # 1 Polarization: 30.55 SS G_CDS: -0.37 Total: 30.18 kcal
Atomic # 6 Polarization: 18.26 SS G_CDS: 4.81 Total: 23.07 kcal
Atomic # 7 Polarization: -103.50 SS G_CDS: -3.60 Total: -107.10 kcal
Atomic # 8 Polarization: -54.59 SS G_CDS: -0.99 Total: -55.58 kcal
Atomic # 9 Polarization: -9.33 SS G_CDS: 1.55 Total: -7.78 kcal
Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal
Total: -75.94 3.43 -72.51 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000123259694.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -127.889 kcal
(2) G-P(sol) polarization free energy of solvation -75.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -200.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds