Wall clock time and date at job start Sat Apr 11 2020 06:32:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46499 * 120.00225 * 2 1
4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1
5 5 H 1.09000 * 109.47402 * 60.00317 * 4 3 2
6 6 O 1.42897 * 109.46977 * 300.00294 * 4 3 2
7 7 C 1.52996 * 109.47245 * 180.02562 * 4 3 2
8 8 N 1.46502 * 109.47627 * 185.00002 * 7 4 3
9 9 C 1.34768 * 120.00372 * 179.97438 * 8 7 4
10 10 O 1.21610 * 119.99951 * 0.02562 * 9 8 7
11 11 C 1.47429 * 120.00162 * 179.97438 * 9 8 7
12 12 C 1.41290 * 126.41106 * 359.69798 * 11 9 8
13 13 N 1.30449 * 108.02175 * 179.87774 * 12 11 9
14 14 N 1.39938 * 108.89407 * 0.37439 * 13 12 11
15 15 H 0.97003 * 125.75145 * 179.72934 * 14 13 12
16 16 C 1.34259 * 108.49697 * 359.76009 * 14 13 12
17 17 C 1.34780 * 120.00229 * 179.97438 * 2 1 3
18 18 O 1.21279 * 120.00031 * 180.02562 * 17 2 1
19 19 C 1.50699 * 119.99563 * 0.02562 * 17 2 1
20 20 S 1.81004 * 109.46896 * 179.97438 * 19 17 2
21 21 C 1.76205 * 99.99950 * 180.02562 * 20 19 17
22 22 H 1.07997 * 120.00211 * 359.97438 * 21 20 19
23 23 C 1.38799 * 119.99841 * 179.97438 * 21 20 19
24 24 N 1.31634 * 119.99716 * 179.97438 * 23 21 20
25 25 Si 1.86800 * 120.00102 * 359.97438 * 23 21 20
26 26 H 1.48497 * 109.47028 * 89.99849 * 25 23 21
27 27 H 1.48506 * 109.47024 * 210.00175 * 25 23 21
28 28 H 1.48500 * 109.47007 * 329.99819 * 25 23 21
29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3
30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3
31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3
32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1
33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1
34 34 H 0.96703 * 114.00499 * 299.99593 * 6 4 3
35 35 H 1.09001 * 109.47044 * 305.00068 * 7 4 3
36 36 H 1.09000 * 109.47161 * 64.99629 * 7 4 3
37 37 H 0.97000 * 119.99346 * 0.02562 * 8 7 4
38 38 H 1.07994 * 125.98959 * 359.97438 * 12 11 9
39 39 H 1.07997 * 126.29379 * 180.02562 * 16 14 13
40 40 H 1.09004 * 109.47017 * 299.99442 * 19 17 2
41 41 H 1.09002 * 109.47507 * 59.99434 * 19 17 2
42 42 H 0.97001 * 119.99678 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7104 1.4426
5 1 3.0416 0.9508 1.9565
6 8 1.2038 1.8813 2.1161
7 6 3.2170 3.0357 1.4426
8 7 3.5654 3.3985 2.8185
9 6 4.2465 4.5353 3.0638
10 8 4.5715 5.2601 2.1430
11 6 4.5966 4.9007 4.4485
12 6 4.2830 4.1668 5.6144
13 7 4.7648 4.8131 6.6400
14 7 5.3930 5.9785 6.1868
15 1 5.8306 6.6403 6.7450
16 6 5.2873 6.0268 4.8492
17 6 2.1389 -1.1672 0.0005
18 8 3.3517 -1.1672 0.0010
19 6 1.3854 -2.4723 0.0005
20 16 2.5616 -3.8480 0.0005
21 6 1.4415 -5.2082 -0.0003
22 1 0.3762 -5.0306 -0.0001
23 6 1.9283 -6.5081 -0.0010
24 7 1.0914 -7.5242 -0.0011
25 14 3.7708 -6.8154 -0.0019
26 1 4.2596 -6.8974 1.3979
27 1 4.0592 -8.0926 -0.7027
28 1 4.4582 -5.7006 -0.7018
29 1 -0.3634 0.0000 1.0277
30 1 -0.3633 -0.8900 -0.5138
31 1 -0.3633 0.8900 -0.5139
32 1 3.1499 1.1384 -0.5137
33 1 1.6085 2.0284 -0.5138
34 1 0.6267 2.5440 1.7126
35 1 4.1277 2.9298 0.8531
36 1 2.5917 3.8158 1.0083
37 1 3.3065 2.8202 3.5529
38 1 3.7408 3.2335 5.6501
39 1 5.6722 6.8036 4.2052
40 1 0.7585 -2.5298 0.8904
41 1 0.7590 -2.5302 -0.8896
42 1 1.4316 -8.4326 -0.0020
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001572463628.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:45
Heat of formation + Delta-G solvation = -44.537526 kcal
Electronic energy + Delta-G solvation = -26307.674188 eV
Core-core repulsion = 22223.015497 eV
Total energy + Delta-G solvation = -4084.658691 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.119 amu
Computer time = 1.55 seconds
Orbital eigenvalues (eV)
-41.79261 -40.00263 -39.35273 -37.72744 -35.16818 -34.54566 -32.43914 -32.36895
-31.38127 -30.67586 -29.08303 -27.10325 -25.72723 -25.37096 -23.18163 -22.47519
-22.12980 -20.39356 -19.46386 -19.09239 -17.73521 -17.30461 -16.79260 -16.49598
-16.36069 -15.84113 -15.65764 -15.36315 -15.18940 -15.05447 -14.93252 -14.47619
-14.12262 -13.90344 -13.75009 -13.32657 -13.17169 -13.04463 -12.79356 -12.71804
-12.44831 -12.15771 -11.83597 -11.65652 -11.42479 -11.25779 -11.01091 -10.72920
-10.58118 -10.36931 -10.21656 -9.86080 -9.52843 -9.50230 -9.19032 -9.00395
-8.60641 -8.49355 -6.92296 -6.29024 -4.00825 1.07586 1.71461 2.18800
2.63061 2.84708 2.97737 3.13097 3.20775 3.33240 3.50346 3.58735
4.05418 4.16977 4.32699 4.33600 4.37480 4.57607 4.65691 4.72183
4.77227 4.85712 4.98328 5.08538 5.10158 5.19048 5.23074 5.40132
5.43524 5.54063 5.69472 5.76743 5.78689 5.84363 6.01256 6.10228
6.47175 6.56078 6.95596 7.22956 7.29086 7.38228 7.94012 7.97611
8.38442 8.41525 9.17179 10.80145
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.016155 B = 0.002014 C = 0.001893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1732.788915 B =13900.783783 C =14789.088348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.081 3.919
2 N -0.614 5.614
3 C 0.091 3.909
4 C 0.078 3.922
5 H 0.113 0.887
6 O -0.550 6.550
7 C 0.093 3.907
8 N -0.719 5.719
9 C 0.595 3.405
10 O -0.553 6.553
11 C -0.295 4.295
12 C 0.087 3.913
13 N -0.294 5.294
14 N -0.464 5.464
15 H 0.445 0.555
16 C 0.135 3.865
17 C 0.532 3.468
18 O -0.519 6.519
19 C -0.120 4.120
20 S -0.144 6.144
21 C -0.521 4.521
22 H 0.088 0.912
23 C 0.095 3.905
24 N -0.880 5.880
25 Si 0.857 3.143
26 H -0.267 1.267
27 H -0.274 1.274
28 H -0.235 1.235
29 H 0.063 0.937
30 H 0.074 0.926
31 H 0.066 0.934
32 H 0.096 0.904
33 H 0.081 0.919
34 H 0.372 0.628
35 H 0.081 0.919
36 H 0.073 0.927
37 H 0.405 0.595
38 H 0.192 0.808
39 H 0.192 0.808
40 H 0.097 0.903
41 H 0.097 0.903
42 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.815 29.410 7.525 30.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.349 5.349
3 C -0.034 4.034
4 C 0.018 3.982
5 H 0.131 0.869
6 O -0.355 6.355
7 C -0.031 4.031
8 N -0.370 5.370
9 C 0.383 3.617
10 O -0.432 6.432
11 C -0.310 4.310
12 C -0.102 4.102
13 N -0.115 5.115
14 N -0.169 5.169
15 H 0.290 0.710
16 C -0.019 4.019
17 C 0.320 3.680
18 O -0.394 6.394
19 C -0.271 4.271
20 S 0.082 5.918
21 C -0.668 4.668
22 H 0.106 0.894
23 C -0.113 4.113
24 N -0.517 5.517
25 Si 0.682 3.318
26 H -0.192 1.192
27 H -0.200 1.200
28 H -0.159 1.159
29 H 0.081 0.919
30 H 0.093 0.907
31 H 0.085 0.915
32 H 0.115 0.885
33 H 0.100 0.900
34 H 0.219 0.781
35 H 0.099 0.901
36 H 0.091 0.909
37 H 0.240 0.760
38 H 0.209 0.791
39 H 0.209 0.791
40 H 0.115 0.885
41 H 0.115 0.885
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 4.165 29.228 8.500 30.723
hybrid contribution -1.057 0.065 -0.594 1.214
sum 3.108 29.293 7.906 30.500
Atomic orbital electron populations
1.21832 0.79073 1.02917 1.02374 1.47638 1.07073 1.04975 1.75259
1.21961 0.99423 0.86005 0.95989 1.22685 0.85341 0.95745 0.94476
0.86930 1.86661 1.28742 1.63556 1.56565 1.21989 1.00781 0.96666
0.83702 1.45601 1.57883 1.24164 1.09364 1.17208 0.76996 0.80530
0.86973 1.90784 1.55051 1.51692 1.45649 1.20294 1.15708 1.00595
0.94381 1.24169 0.97393 0.99555 0.89068 1.77215 1.15216 0.95991
1.23057 1.46278 1.44737 1.20071 1.05807 0.70985 1.23074 0.95250
0.98268 0.85274 1.20342 0.87911 0.84695 0.75041 1.90692 1.13693
1.86858 1.48124 1.23305 1.03068 0.95054 1.05644 1.84781 1.11990
0.97578 1.97418 1.22304 0.94860 0.90876 1.58771 0.89387 1.24716
0.98536 0.94886 0.93195 1.69941 1.34780 0.98872 1.48064 0.86733
0.85367 0.79807 0.79928 1.19216 1.19962 1.15934 0.91885 0.90742
0.91542 0.88546 0.90046 0.78136 0.90091 0.90914 0.76026 0.79105
0.79089 0.88453 0.88508 0.91950
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.73 9.74 59.85 0.58 1.31 16
2 N -0.61 -7.43 2.80 -181.57 -0.51 -7.93 16
3 C 0.09 0.85 5.14 -4.04 -0.02 0.82 16
4 C 0.08 0.67 3.27 -26.73 -0.09 0.58 16
5 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16
6 O -0.55 -4.30 12.51 -35.23 -0.44 -4.74 16
7 C 0.09 0.75 5.31 -4.04 -0.02 0.72 16
8 N -0.72 -5.92 5.49 -61.38 -0.34 -6.26 16
9 C 0.60 5.99 7.81 -12.52 -0.10 5.89 16
10 O -0.55 -7.32 16.90 5.27 0.09 -7.23 16
11 C -0.29 -2.44 6.13 -105.07 -0.64 -3.08 16
12 C 0.09 0.65 11.50 -16.98 -0.20 0.46 16
13 N -0.29 -2.45 12.63 30.86 0.39 -2.06 16
14 N -0.46 -2.55 7.29 30.85 0.22 -2.32 16
15 H 0.45 0.89 8.96 -182.72 -1.64 -0.75 16
16 C 0.13 0.83 11.82 -16.56 -0.20 0.64 16
17 C 0.53 9.17 7.69 -10.98 -0.08 9.09 16
18 O -0.52 -10.69 15.44 5.56 0.09 -10.60 16
19 C -0.12 -2.29 4.71 36.00 0.17 -2.12 16
20 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16
21 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16
22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16
23 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16
24 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16
25 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16
26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16
27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16
28 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16
29 H 0.06 0.56 8.01 -51.93 -0.42 0.14 16
30 H 0.07 0.72 6.44 -51.93 -0.33 0.38 16
31 H 0.07 0.41 7.89 -51.93 -0.41 0.00 16
32 H 0.10 1.05 7.42 -51.93 -0.39 0.67 16
33 H 0.08 0.50 7.89 -51.93 -0.41 0.09 16
34 H 0.37 1.62 9.05 45.56 0.41 2.03 16
35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
37 H 0.40 2.77 7.43 -40.82 -0.30 2.47 16
38 H 0.19 0.95 7.50 -52.49 -0.39 0.56 16
39 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16
40 H 0.10 1.76 8.11 -51.91 -0.42 1.34 16
41 H 0.10 1.72 7.40 -51.91 -0.38 1.33 16
42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
LS Contribution 377.87 15.07 5.69 5.69
Total: -1.00 -39.18 377.87 -7.07 -46.24
By element:
Atomic # 1 Polarization: 7.01 SS G_CDS: -5.95 Total: 1.06 kcal
Atomic # 6 Polarization: 2.80 SS G_CDS: -0.38 Total: 2.42 kcal
Atomic # 7 Polarization: -44.77 SS G_CDS: 0.54 Total: -44.23 kcal
Atomic # 8 Polarization: -22.31 SS G_CDS: -0.27 Total: -22.58 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal
Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -39.18 -7.07 -46.24 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001572463628.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.703 kcal
(2) G-P(sol) polarization free energy of solvation -39.175 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.55 seconds