Wall clock time and date at job start Sat Apr 11 2020 06:32:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46499 * 120.00225 * 2 1
4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1
5 5 H 1.09000 * 109.47402 * 60.00317 * 4 3 2
6 6 O 1.42897 * 109.46977 * 300.00294 * 4 3 2
7 7 C 1.52996 * 109.47245 * 180.02562 * 4 3 2
8 8 N 1.46502 * 109.47627 * 185.00002 * 7 4 3
9 9 C 1.34768 * 120.00372 * 179.97438 * 8 7 4
10 10 O 1.21610 * 119.99951 * 0.02562 * 9 8 7
11 11 C 1.47429 * 120.00162 * 179.97438 * 9 8 7
12 12 C 1.41290 * 126.41106 * 359.69798 * 11 9 8
13 13 N 1.30449 * 108.02175 * 179.87774 * 12 11 9
14 14 N 1.39938 * 108.89407 * 0.37439 * 13 12 11
15 15 H 0.97003 * 125.75145 * 179.72934 * 14 13 12
16 16 C 1.34259 * 108.49697 * 359.76009 * 14 13 12
17 17 C 1.34780 * 120.00229 * 179.97438 * 2 1 3
18 18 O 1.21279 * 120.00031 * 180.02562 * 17 2 1
19 19 C 1.50699 * 119.99563 * 0.02562 * 17 2 1
20 20 S 1.81004 * 109.46896 * 179.97438 * 19 17 2
21 21 C 1.76205 * 99.99950 * 180.02562 * 20 19 17
22 22 H 1.07997 * 120.00211 * 359.97438 * 21 20 19
23 23 C 1.38799 * 119.99841 * 179.97438 * 21 20 19
24 24 N 1.31634 * 119.99716 * 179.97438 * 23 21 20
25 25 Si 1.86800 * 120.00102 * 359.97438 * 23 21 20
26 26 H 1.48497 * 109.47028 * 89.99849 * 25 23 21
27 27 H 1.48506 * 109.47024 * 210.00175 * 25 23 21
28 28 H 1.48500 * 109.47007 * 329.99819 * 25 23 21
29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3
30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3
31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3
32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1
33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1
34 34 H 0.96703 * 114.00499 * 299.99593 * 6 4 3
35 35 H 1.09001 * 109.47044 * 305.00068 * 7 4 3
36 36 H 1.09000 * 109.47161 * 64.99629 * 7 4 3
37 37 H 0.97000 * 119.99346 * 0.02562 * 8 7 4
38 38 H 1.07994 * 125.98959 * 359.97438 * 12 11 9
39 39 H 1.07997 * 126.29379 * 180.02562 * 16 14 13
40 40 H 1.09004 * 109.47017 * 299.99442 * 19 17 2
41 41 H 1.09002 * 109.47507 * 59.99434 * 19 17 2
42 42 H 0.97001 * 119.99678 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7104 1.4426
5 1 3.0416 0.9508 1.9565
6 8 1.2038 1.8813 2.1161
7 6 3.2170 3.0357 1.4426
8 7 3.5654 3.3985 2.8185
9 6 4.2465 4.5353 3.0638
10 8 4.5715 5.2601 2.1430
11 6 4.5966 4.9007 4.4485
12 6 4.2830 4.1668 5.6144
13 7 4.7648 4.8131 6.6400
14 7 5.3930 5.9785 6.1868
15 1 5.8306 6.6403 6.7450
16 6 5.2873 6.0268 4.8492
17 6 2.1389 -1.1672 0.0005
18 8 3.3517 -1.1672 0.0010
19 6 1.3854 -2.4723 0.0005
20 16 2.5616 -3.8480 0.0005
21 6 1.4415 -5.2082 -0.0003
22 1 0.3762 -5.0306 -0.0001
23 6 1.9283 -6.5081 -0.0010
24 7 1.0914 -7.5242 -0.0011
25 14 3.7708 -6.8154 -0.0019
26 1 4.2596 -6.8974 1.3979
27 1 4.0592 -8.0926 -0.7027
28 1 4.4582 -5.7006 -0.7018
29 1 -0.3634 0.0000 1.0277
30 1 -0.3633 -0.8900 -0.5138
31 1 -0.3633 0.8900 -0.5139
32 1 3.1499 1.1384 -0.5137
33 1 1.6085 2.0284 -0.5138
34 1 0.6267 2.5440 1.7126
35 1 4.1277 2.9298 0.8531
36 1 2.5917 3.8158 1.0083
37 1 3.3065 2.8202 3.5529
38 1 3.7408 3.2335 5.6501
39 1 5.6722 6.8036 4.2052
40 1 0.7585 -2.5298 0.8904
41 1 0.7590 -2.5302 -0.8896
42 1 1.4316 -8.4326 -0.0020
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001572463628.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:44
Heat of formation + Delta-G solvation = -78.125379 kcal
Electronic energy + Delta-G solvation = -26309.130667 eV
Core-core repulsion = 22223.015497 eV
Total energy + Delta-G solvation = -4086.115169 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.119 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-42.32962 -41.04449 -40.21110 -38.57585 -36.23194 -35.27121 -34.66349 -32.92136
-32.22313 -31.40396 -30.21594 -27.92782 -27.83154 -26.36790 -23.87952 -23.05592
-22.77147 -21.08519 -20.69840 -19.66069 -19.57520 -18.26770 -17.83385 -17.28789
-17.19501 -17.09399 -16.70983 -16.58270 -16.18272 -15.99244 -15.62420 -15.55426
-15.16768 -15.03639 -14.89725 -14.58400 -14.32195 -13.92049 -13.78551 -13.58223
-13.45570 -13.33828 -13.18393 -13.01222 -12.75723 -12.48381 -12.26048 -12.12804
-11.86115 -11.41526 -11.16471 -11.01028 -10.88763 -10.88481 -10.51430 -10.21304
-9.76975 -9.59043 -8.98951 -8.50872 -6.21511 0.54216 0.99343 1.12663
1.31738 1.46639 1.52207 1.56636 1.76953 2.06530 2.25430 2.36751
2.45090 2.70226 2.87311 3.44864 3.58634 3.63620 3.75059 3.89700
3.98897 4.03698 4.12446 4.19434 4.35276 4.39520 4.41892 4.48451
4.64254 4.72109 4.81338 4.81532 5.00567 5.06790 5.30451 5.42804
5.56362 5.71474 6.12042 6.20637 6.24720 6.43231 6.60291 6.86161
6.94378 7.11460 7.26789 8.61414
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.016155 B = 0.002014 C = 0.001893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1732.788915 B =13900.783783 C =14789.088348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.599 5.599
3 C 0.086 3.914
4 C 0.097 3.903
5 H 0.082 0.918
6 O -0.557 6.557
7 C 0.099 3.901
8 N -0.712 5.712
9 C 0.594 3.406
10 O -0.591 6.591
11 C -0.322 4.322
12 C 0.088 3.912
13 N -0.324 5.324
14 N -0.451 5.451
15 H 0.460 0.540
16 C 0.147 3.853
17 C 0.530 3.470
18 O -0.562 6.562
19 C -0.106 4.106
20 S -0.178 6.178
21 C -0.528 4.528
22 H 0.062 0.938
23 C 0.045 3.955
24 N -0.916 5.916
25 Si 0.914 3.086
26 H -0.263 1.263
27 H -0.259 1.259
28 H -0.237 1.237
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.106 0.894
32 H 0.079 0.921
33 H 0.125 0.875
34 H 0.391 0.609
35 H 0.068 0.932
36 H 0.088 0.912
37 H 0.411 0.589
38 H 0.209 0.791
39 H 0.216 0.784
40 H 0.107 0.893
41 H 0.111 0.889
42 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.543 31.701 7.719 32.664
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.332 5.332
3 C -0.037 4.037
4 C 0.036 3.964
5 H 0.100 0.900
6 O -0.364 6.364
7 C -0.026 4.026
8 N -0.363 5.363
9 C 0.383 3.617
10 O -0.473 6.473
11 C -0.337 4.337
12 C -0.101 4.101
13 N -0.146 5.146
14 N -0.157 5.157
15 H 0.308 0.692
16 C -0.007 4.007
17 C 0.317 3.683
18 O -0.440 6.440
19 C -0.256 4.256
20 S 0.049 5.951
21 C -0.675 4.675
22 H 0.080 0.920
23 C -0.160 4.160
24 N -0.554 5.554
25 Si 0.736 3.264
26 H -0.188 1.188
27 H -0.184 1.184
28 H -0.161 1.161
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.125 0.875
32 H 0.097 0.903
33 H 0.143 0.857
34 H 0.240 0.760
35 H 0.086 0.914
36 H 0.106 0.894
37 H 0.248 0.752
38 H 0.225 0.775
39 H 0.232 0.768
40 H 0.126 0.874
41 H 0.129 0.871
42 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 3.835 31.552 8.726 32.960
hybrid contribution -1.123 -0.469 -0.621 1.366
sum 2.712 31.083 8.105 32.236
Atomic orbital electron populations
1.22118 0.76717 1.04664 1.03370 1.47621 1.08492 1.04273 1.72773
1.22220 0.99305 0.85381 0.96787 1.22271 0.85579 0.95058 0.93486
0.89974 1.86640 1.28528 1.64465 1.56783 1.21926 1.00399 0.96688
0.83541 1.45572 1.57254 1.23766 1.09750 1.17446 0.76530 0.80383
0.87292 1.90756 1.56780 1.52938 1.46790 1.20323 1.17615 1.02005
0.93726 1.24461 0.97011 1.00004 0.88580 1.77165 1.16350 0.97198
1.23846 1.46297 1.43934 1.19633 1.05868 0.69215 1.23463 0.93742
0.97956 0.85585 1.20010 0.87270 0.85455 0.75518 1.90678 1.15229
1.87452 1.50685 1.23280 1.01725 0.93780 1.06862 1.84695 1.13883
0.99015 1.97556 1.22450 0.94380 0.92500 1.58190 0.91962 1.25563
1.02717 0.94797 0.92941 1.70018 1.36728 0.99507 1.49157 0.85870
0.80268 0.80067 0.80182 1.18756 1.18353 1.16083 0.91202 0.91395
0.87533 0.90276 0.85659 0.75956 0.91362 0.89357 0.75228 0.77471
0.76772 0.87439 0.87086 0.91390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.06 9.74 127.77 1.25 2.31 16
2 N -0.60 -13.10 2.80 -846.75 -2.37 -15.46 16
3 C 0.09 1.40 5.14 86.38 0.44 1.84 16
4 C 0.10 1.49 3.27 30.59 0.10 1.59 16
5 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
6 O -0.56 -7.07 12.51 -148.98 -1.86 -8.93 16
7 C 0.10 1.44 5.31 86.38 0.46 1.89 16
8 N -0.71 -10.99 5.49 -466.37 -2.56 -13.56 16
9 C 0.59 11.49 7.81 86.67 0.68 12.17 16
10 O -0.59 -15.28 16.90 -4.06 -0.07 -15.35 16
11 C -0.32 -4.99 6.13 -20.15 -0.12 -5.11 16
12 C 0.09 1.23 11.50 85.65 0.99 2.22 16
13 N -0.32 -5.05 12.63 -56.28 -0.71 -5.76 16
14 N -0.45 -4.26 7.29 -56.32 -0.41 -4.67 16
15 H 0.46 1.04 8.96 -213.42 -1.91 -0.87 16
16 C 0.15 1.59 11.82 84.28 1.00 2.59 16
17 C 0.53 17.82 7.69 87.66 0.67 18.49 16
18 O -0.56 -23.23 15.44 -3.02 -0.05 -23.27 16
19 C -0.11 -3.97 4.71 71.24 0.34 -3.64 16
20 S -0.18 -9.00 18.55 -56.49 -1.05 -10.05 16
21 C -0.53 -30.70 10.04 67.95 0.68 -30.01 16
22 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16
23 C 0.05 2.66 5.50 84.86 0.47 3.12 16
24 N -0.92 -55.71 13.97 21.65 0.30 -55.41 16
25 Si 0.91 45.09 27.74 68.60 1.90 46.99 16
26 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16
27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16
28 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16
29 H 0.07 0.99 8.01 -2.39 -0.02 0.97 16
30 H 0.07 1.12 6.44 -2.39 -0.02 1.10 16
31 H 0.11 0.76 7.89 -2.38 -0.02 0.74 16
32 H 0.08 1.64 7.42 -2.39 -0.02 1.62 16
33 H 0.13 0.97 7.89 -2.39 -0.02 0.95 16
34 H 0.39 1.79 9.05 -74.06 -0.67 1.12 16
35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.41 5.20 7.43 -92.71 -0.69 4.51 16
38 H 0.21 1.85 7.50 -2.91 -0.02 1.83 16
39 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16
40 H 0.11 3.81 8.11 -2.39 -0.02 3.79 16
41 H 0.11 3.84 7.40 -2.39 -0.02 3.82 16
42 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16
Total: -1.00 -86.79 377.87 -2.14 -88.93
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: -2.21 Total: 9.08 kcal
Atomic # 6 Polarization: 0.52 SS G_CDS: 6.94 Total: 7.46 kcal
Atomic # 7 Polarization: -89.12 SS G_CDS: -5.75 Total: -94.87 kcal
Atomic # 8 Polarization: -45.58 SS G_CDS: -1.98 Total: -47.56 kcal
Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal
Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.05 kcal
Total: -86.79 -2.14 -88.93 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001572463628.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.807 kcal
(2) G-P(sol) polarization free energy of solvation -86.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.142 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.932 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds