Wall clock time and date at job start Sat Apr 11 2020 06:30:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99910 * 2 1
4 4 H 1.48498 * 109.46942 * 269.99578 * 3 2 1
5 5 H 1.48496 * 109.47165 * 29.99542 * 3 2 1
6 6 H 1.48497 * 109.47097 * 149.99687 * 3 2 1
7 7 C 1.38815 * 119.99795 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00532 * 0.02562 * 7 2 1
9 9 N 1.36943 * 119.99610 * 180.02562 * 7 2 1
10 10 C 1.46500 * 119.99587 * 179.97438 * 9 7 2
11 11 C 1.53005 * 109.46787 * 174.68634 * 10 9 7
12 12 H 1.09001 * 109.58601 * 312.74663 * 11 10 9
13 13 C 1.53185 * 109.70317 * 192.38991 * 11 10 9
14 14 C 1.53046 * 109.31496 * 185.50682 * 13 11 10
15 15 C 1.53352 * 109.60460 * 61.37334 * 14 13 11
16 16 C 1.53200 * 109.14999 * 298.71461 * 15 14 13
17 17 N 1.46926 * 109.58508 * 73.02506 * 11 10 9
18 18 C 1.34775 * 120.63379 * 353.51892 * 17 11 10
19 19 O 1.21588 * 119.99681 * 356.83681 * 18 17 11
20 20 C 1.47573 * 120.00168 * 176.83069 * 18 17 11
21 21 C 1.39747 * 120.13012 * 35.90940 * 20 18 17
22 22 C 1.37748 * 119.94453 * 179.74001 * 21 20 18
23 23 C 1.38720 * 120.21236 * 0.53280 * 22 21 20
24 24 F 1.35100 * 119.86842 * 179.69869 * 23 22 21
25 25 C 1.38663 * 120.26555 * 359.71928 * 23 22 21
26 26 F 1.35103 * 119.97448 * 179.97438 * 25 23 22
27 27 C 1.38384 * 120.05268 * 0.02562 * 25 23 22
28 28 F 1.35106 * 120.10446 * 179.97438 * 27 25 23
29 29 H 0.96998 * 120.00086 * 0.02562 * 1 2 3
30 30 H 0.97002 * 119.99950 * 0.02562 * 9 7 2
31 31 H 1.09002 * 109.47077 * 54.69310 * 10 9 7
32 32 H 1.08997 * 109.47472 * 294.68669 * 10 9 7
33 33 H 1.09002 * 109.49888 * 305.46066 * 13 11 10
34 34 H 1.09000 * 109.49891 * 65.52658 * 13 11 10
35 35 H 1.08999 * 109.46235 * 181.38297 * 14 13 11
36 36 H 1.09001 * 109.45750 * 301.36070 * 14 13 11
37 37 H 1.09000 * 109.68222 * 178.75238 * 15 14 13
38 38 H 1.08995 * 109.47427 * 58.55090 * 15 14 13
39 39 H 1.09003 * 109.58152 * 294.72290 * 16 15 14
40 40 H 1.08995 * 109.58503 * 174.43873 * 16 15 14
41 41 H 1.07997 * 120.02697 * 359.97310 * 21 20 18
42 42 H 1.08002 * 119.89771 * 180.27452 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 1.4703 -2.1375 0.0005
9 7 3.3797 -1.2022 0.0011
10 6 4.1121 -2.4709 0.0022
11 6 5.6111 -2.1945 -0.1310
12 1 5.7806 -1.4791 -0.9357
13 6 6.3515 -3.4995 -0.4396
14 6 7.8596 -3.2392 -0.4350
15 6 8.2939 -2.7542 0.9535
16 6 7.5727 -1.4415 1.2755
17 7 6.1249 -1.6463 1.1316
18 6 5.2842 -1.3369 2.1385
19 8 4.0838 -1.4564 1.9867
20 6 5.8206 -0.8531 3.4254
21 6 6.9495 -0.0298 3.4498
22 6 7.4438 0.4239 4.6528
23 6 6.8310 0.0574 5.8421
24 9 7.3253 0.5015 7.0184
25 6 5.7135 -0.7634 5.8285
26 9 5.1216 -1.1172 6.9903
27 6 5.2045 -1.2213 4.6258
28 9 4.1160 -2.0215 4.6114
29 1 -0.4850 0.8400 -0.0004
30 1 3.8646 -0.3621 0.0014
31 1 3.7797 -3.0831 -0.8362
32 1 3.9217 -2.9996 0.9362
33 1 6.1085 -4.2438 0.3189
34 1 6.0483 -3.8668 -1.4200
35 1 8.3880 -4.1609 -0.6785
36 1 8.0987 -2.4767 -1.1764
37 1 9.3713 -2.5895 0.9644
38 1 8.0325 -3.5052 1.6989
39 1 7.9022 -0.6648 0.5854
40 1 7.7994 -1.1415 2.2986
41 1 7.4318 0.2535 2.5259
42 1 8.3137 1.0638 4.6704
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266875845.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:26
Heat of formation + Delta-G solvation = -63.591674 kcal
Electronic energy + Delta-G solvation = -31475.440351 eV
Core-core repulsion = 26816.195063 eV
Total energy + Delta-G solvation = -4659.245289 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-49.92263 -49.29435 -48.54910 -40.78835 -38.68867 -37.11818 -34.76305 -33.08001
-32.16944 -30.96525 -30.61881 -30.21998 -26.66297 -24.90118 -24.13468 -23.58869
-22.45095 -21.67349 -20.67788 -19.64907 -18.47288 -18.25703 -17.89592 -17.26269
-16.96047 -16.37393 -15.96018 -15.67581 -15.58215 -15.28200 -15.12477 -14.92287
-14.72195 -14.50376 -14.45849 -14.14352 -13.94275 -13.75698 -13.29658 -12.95002
-12.64639 -12.53859 -12.48557 -12.27082 -12.14866 -12.08004 -11.78613 -11.29087
-11.15874 -10.92893 -10.78465 -10.61727 -10.34652 -10.03841 -9.43916 -9.22308
-9.15975 -8.81111 -8.70318 -8.32817 -6.88002 -5.60349 -2.84779 0.17573
0.44661 2.50372 2.85798 3.17950 3.31516 3.45711 3.48373 3.53122
3.87761 3.97628 4.14090 4.15753 4.42162 4.59075 4.72347 4.74009
4.77881 4.93113 5.06493 5.19242 5.24239 5.31474 5.33082 5.44091
5.45872 5.55597 5.58032 5.65534 5.71396 5.77170 5.82940 5.93731
5.95811 6.06942 6.25710 6.27717 6.44440 6.73312 7.06736 7.56583
8.15440 8.50770 8.58775 9.38488 10.11444 10.31726 11.59216
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.009223 B = 0.005286 C = 0.003952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3035.207325 B = 5296.112095 C = 7083.505838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.940 5.940
2 C -0.003 4.003
3 Si 0.883 3.117
4 H -0.288 1.288
5 H -0.294 1.294
6 H -0.281 1.281
7 C -0.209 4.209
8 H 0.087 0.913
9 N -0.719 5.719
10 C 0.163 3.837
11 C 0.140 3.860
12 H 0.072 0.928
13 C -0.127 4.127
14 C -0.118 4.118
15 C -0.134 4.134
16 C 0.080 3.920
17 N -0.607 5.607
18 C 0.509 3.491
19 O -0.420 6.420
20 C -0.135 4.135
21 C -0.061 4.061
22 C -0.143 4.143
23 C 0.108 3.892
24 F -0.119 7.119
25 C 0.026 3.974
26 F -0.115 7.115
27 C 0.149 3.851
28 F -0.095 7.095
29 H 0.256 0.744
30 H 0.356 0.644
31 H 0.030 0.970
32 H 0.046 0.954
33 H 0.068 0.932
34 H 0.077 0.923
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.072 0.928
38 H 0.067 0.933
39 H 0.070 0.930
40 H 0.101 0.899
41 H 0.167 0.833
42 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.548 -2.914 6.404 25.536
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.589 5.589
2 C -0.198 4.198
3 Si 0.715 3.285
4 H -0.216 1.216
5 H -0.221 1.221
6 H -0.207 1.207
7 C -0.339 4.339
8 H 0.105 0.895
9 N -0.363 5.363
10 C 0.036 3.964
11 C 0.038 3.962
12 H 0.090 0.910
13 C -0.166 4.166
14 C -0.156 4.156
15 C -0.173 4.173
16 C -0.042 4.042
17 N -0.345 5.345
18 C 0.293 3.707
19 O -0.288 6.288
20 C -0.140 4.140
21 C -0.080 4.080
22 C -0.162 4.162
23 C 0.087 3.913
24 F -0.097 7.097
25 C 0.005 3.995
26 F -0.094 7.094
27 C 0.127 3.873
28 F -0.073 7.073
29 H 0.066 0.934
30 H 0.189 0.811
31 H 0.048 0.952
32 H 0.063 0.937
33 H 0.087 0.913
34 H 0.095 0.905
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.091 0.909
38 H 0.085 0.915
39 H 0.088 0.912
40 H 0.118 0.882
41 H 0.184 0.816
42 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 23.515 -3.105 6.398 24.566
hybrid contribution 0.443 1.224 0.662 1.460
sum 23.958 -1.881 7.059 25.047
Atomic orbital electron populations
1.69697 1.05021 1.25373 1.58825 1.24578 0.95131 0.96865 1.03186
0.86527 0.79249 0.85486 0.77224 1.21566 1.22068 1.20724 1.19036
0.80777 0.94435 1.39688 0.89500 1.42625 1.03810 1.01671 1.88186
1.20881 0.86204 0.90361 0.99000 1.21599 0.95809 0.94356 0.84472
0.90979 1.21906 0.94697 0.97420 1.02594 1.21563 0.96037 1.01232
0.96769 1.21981 0.99685 0.97573 0.98037 1.22475 0.80775 0.97873
1.03122 1.47745 1.06042 1.65787 1.14923 1.17869 0.87276 0.82437
0.83128 1.91381 1.12663 1.46370 1.78387 1.20332 0.97602 1.02185
0.93834 1.21511 0.93274 0.94203 0.98988 1.21055 1.02639 1.02811
0.89732 1.17501 0.93527 0.97504 0.82770 1.91565 1.86309 1.87149
1.44706 1.17435 0.96408 1.03812 0.81882 1.91574 1.82660 1.90380
1.44738 1.17293 0.85942 0.92834 0.91202 1.91680 1.49551 1.69186
1.96894 0.93398 0.81100 0.95227 0.93683 0.91320 0.90457 0.91811
0.91799 0.90926 0.91471 0.91223 0.88166 0.81632 0.82469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 32.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -31.03 13.97 55.49 0.78 -30.25 16
2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16
3 Si 0.88 23.53 27.74 -169.99 -4.71 18.81 16
4 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16
5 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16
6 H -0.28 -7.14 6.52 56.52 0.37 -6.78 16
7 C -0.21 -6.23 10.22 -15.06 -0.15 -6.39 16
8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16
9 N -0.72 -17.87 3.03 -59.91 -0.18 -18.05 16
10 C 0.16 3.26 4.90 -4.04 -0.02 3.24 16
11 C 0.14 2.06 2.90 -67.60 -0.20 1.86 16
12 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
13 C -0.13 -1.41 5.35 -26.61 -0.14 -1.55 16
14 C -0.12 -0.98 5.89 -26.53 -0.16 -1.14 16
15 C -0.13 -1.02 6.11 -26.45 -0.16 -1.18 16
16 C 0.08 0.70 4.96 -3.71 -0.02 0.68 16
17 N -0.61 -8.33 2.97 -166.42 -0.49 -8.82 16
18 C 0.51 8.73 6.91 -12.45 -0.09 8.64 16
19 O -0.42 -9.55 9.86 5.29 0.05 -9.50 16
20 C -0.13 -1.89 5.47 -104.92 -0.57 -2.46 16
21 C -0.06 -0.58 7.39 -39.20 -0.29 -0.87 16
22 C -0.14 -1.17 10.00 -39.58 -0.40 -1.56 16
23 C 0.11 1.17 7.31 -39.25 -0.29 0.88 16
24 F -0.12 -1.30 17.17 2.25 0.04 -1.26 16
25 C 0.03 0.35 7.30 -39.37 -0.29 0.06 16
26 F -0.12 -1.67 17.09 2.25 0.04 -1.63 16
27 C 0.15 2.28 7.25 -38.92 -0.28 2.00 16
28 F -0.10 -1.76 16.05 2.25 0.04 -1.73 16
29 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16
30 H 0.36 8.78 5.11 -40.82 -0.21 8.58 16
31 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16
32 H 0.05 1.00 6.30 -51.93 -0.33 0.68 16
33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16
37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
40 H 0.10 0.73 3.63 -51.99 -0.19 0.54 16
41 H 0.17 1.14 5.58 -52.49 -0.29 0.85 16
42 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16
LS Contribution 344.34 15.07 5.19 5.19
Total: -1.00 -36.46 344.34 -7.24 -43.70
By element:
Atomic # 1 Polarization: 6.35 SS G_CDS: -4.83 Total: 1.52 kcal
Atomic # 6 Polarization: 5.16 SS G_CDS: -3.15 Total: 2.02 kcal
Atomic # 7 Polarization: -57.23 SS G_CDS: 0.10 Total: -57.13 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: 0.05 Total: -9.50 kcal
Atomic # 9 Polarization: -4.73 SS G_CDS: 0.11 Total: -4.62 kcal
Atomic # 14 Polarization: 23.53 SS G_CDS: -4.71 Total: 18.81 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -36.46 -7.24 -43.70 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266875845.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.887 kcal
(2) G-P(sol) polarization free energy of solvation -36.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.350 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.592 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds