Wall clock time and date at job start Sat Apr 11 2020 06:30:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99910 * 2 1
4 4 H 1.48498 * 109.46942 * 269.99578 * 3 2 1
5 5 H 1.48496 * 109.47165 * 29.99542 * 3 2 1
6 6 H 1.48497 * 109.47097 * 149.99687 * 3 2 1
7 7 C 1.38815 * 119.99795 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00532 * 0.02562 * 7 2 1
9 9 N 1.36943 * 119.99610 * 180.02562 * 7 2 1
10 10 C 1.46500 * 119.99587 * 179.97438 * 9 7 2
11 11 C 1.53005 * 109.46787 * 174.68634 * 10 9 7
12 12 H 1.09001 * 109.58601 * 312.74663 * 11 10 9
13 13 C 1.53185 * 109.70317 * 192.38991 * 11 10 9
14 14 C 1.53046 * 109.31496 * 185.50682 * 13 11 10
15 15 C 1.53352 * 109.60460 * 61.37334 * 14 13 11
16 16 C 1.53200 * 109.14999 * 298.71461 * 15 14 13
17 17 N 1.46926 * 109.58508 * 73.02506 * 11 10 9
18 18 C 1.34775 * 120.63379 * 353.51892 * 17 11 10
19 19 O 1.21588 * 119.99681 * 356.83681 * 18 17 11
20 20 C 1.47573 * 120.00168 * 176.83069 * 18 17 11
21 21 C 1.39747 * 120.13012 * 35.90940 * 20 18 17
22 22 C 1.37748 * 119.94453 * 179.74001 * 21 20 18
23 23 C 1.38720 * 120.21236 * 0.53280 * 22 21 20
24 24 F 1.35100 * 119.86842 * 179.69869 * 23 22 21
25 25 C 1.38663 * 120.26555 * 359.71928 * 23 22 21
26 26 F 1.35103 * 119.97448 * 179.97438 * 25 23 22
27 27 C 1.38384 * 120.05268 * 0.02562 * 25 23 22
28 28 F 1.35106 * 120.10446 * 179.97438 * 27 25 23
29 29 H 0.96998 * 120.00086 * 0.02562 * 1 2 3
30 30 H 0.97002 * 119.99950 * 0.02562 * 9 7 2
31 31 H 1.09002 * 109.47077 * 54.69310 * 10 9 7
32 32 H 1.08997 * 109.47472 * 294.68669 * 10 9 7
33 33 H 1.09002 * 109.49888 * 305.46066 * 13 11 10
34 34 H 1.09000 * 109.49891 * 65.52658 * 13 11 10
35 35 H 1.08999 * 109.46235 * 181.38297 * 14 13 11
36 36 H 1.09001 * 109.45750 * 301.36070 * 14 13 11
37 37 H 1.09000 * 109.68222 * 178.75238 * 15 14 13
38 38 H 1.08995 * 109.47427 * 58.55090 * 15 14 13
39 39 H 1.09003 * 109.58152 * 294.72290 * 16 15 14
40 40 H 1.08995 * 109.58503 * 174.43873 * 16 15 14
41 41 H 1.07997 * 120.02697 * 359.97310 * 21 20 18
42 42 H 1.08002 * 119.89771 * 180.27452 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 1.4703 -2.1375 0.0005
9 7 3.3797 -1.2022 0.0011
10 6 4.1121 -2.4709 0.0022
11 6 5.6111 -2.1945 -0.1310
12 1 5.7806 -1.4791 -0.9357
13 6 6.3515 -3.4995 -0.4396
14 6 7.8596 -3.2392 -0.4350
15 6 8.2939 -2.7542 0.9535
16 6 7.5727 -1.4415 1.2755
17 7 6.1249 -1.6463 1.1316
18 6 5.2842 -1.3369 2.1385
19 8 4.0838 -1.4564 1.9867
20 6 5.8206 -0.8531 3.4254
21 6 6.9495 -0.0298 3.4498
22 6 7.4438 0.4239 4.6528
23 6 6.8310 0.0574 5.8421
24 9 7.3253 0.5015 7.0184
25 6 5.7135 -0.7634 5.8285
26 9 5.1216 -1.1172 6.9903
27 6 5.2045 -1.2213 4.6258
28 9 4.1160 -2.0215 4.6114
29 1 -0.4850 0.8400 -0.0004
30 1 3.8646 -0.3621 0.0014
31 1 3.7797 -3.0831 -0.8362
32 1 3.9217 -2.9996 0.9362
33 1 6.1085 -4.2438 0.3189
34 1 6.0483 -3.8668 -1.4200
35 1 8.3880 -4.1609 -0.6785
36 1 8.0987 -2.4767 -1.1764
37 1 9.3713 -2.5895 0.9644
38 1 8.0325 -3.5052 1.6989
39 1 7.9022 -0.6648 0.5854
40 1 7.7994 -1.1415 2.2986
41 1 7.4318 0.2535 2.5259
42 1 8.3137 1.0638 4.6704
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266875845.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:25
Heat of formation + Delta-G solvation = -88.656302 kcal
Electronic energy + Delta-G solvation = -31476.527235 eV
Core-core repulsion = 26816.195063 eV
Total energy + Delta-G solvation = -4660.332173 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-50.96417 -50.36392 -49.65256 -41.92704 -39.68671 -38.24327 -36.52312 -34.25084
-33.73376 -32.21274 -31.83955 -31.36793 -28.02504 -26.19637 -25.05961 -24.66107
-23.91560 -23.01891 -21.75336 -20.72041 -19.78328 -19.45022 -19.10514 -18.72281
-18.01087 -17.48509 -17.04392 -16.73816 -16.72853 -16.58537 -16.23566 -16.09259
-15.94362 -15.76754 -15.69926 -15.50045 -15.10387 -14.84493 -14.61127 -14.19214
-14.09142 -13.82175 -13.73664 -13.45671 -13.31079 -13.09961 -13.05989 -12.84399
-12.48501 -12.23312 -12.00300 -11.84975 -11.71303 -11.45215 -11.31740 -10.94024
-10.34335 -10.13019 -9.95550 -9.56698 -8.95867 -7.95712 -5.19095 -0.76684
-0.48925 1.28486 1.36969 1.43051 1.51458 1.79012 2.18069 2.22608
2.52229 2.95338 2.97172 3.15317 3.31887 3.35481 3.53664 3.65891
3.83799 3.96147 4.12416 4.20886 4.30004 4.32385 4.35397 4.40017
4.57285 4.60883 4.62668 4.70328 4.76335 4.84447 4.96887 5.03948
5.14549 5.16083 5.28137 5.31895 5.35243 5.54480 5.72939 5.78783
6.27203 6.43470 7.16201 7.29134 7.94984 8.14717 9.28151
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.009223 B = 0.005286 C = 0.003952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3035.207325 B = 5296.112095 C = 7083.505838
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.997 5.997
2 C -0.080 4.080
3 Si 0.961 3.039
4 H -0.271 1.271
5 H -0.302 1.302
6 H -0.261 1.261
7 C -0.197 4.197
8 H 0.041 0.959
9 N -0.719 5.719
10 C 0.163 3.837
11 C 0.147 3.853
12 H 0.084 0.916
13 C -0.122 4.122
14 C -0.114 4.114
15 C -0.131 4.131
16 C 0.069 3.931
17 N -0.600 5.600
18 C 0.510 3.490
19 O -0.498 6.498
20 C -0.151 4.151
21 C -0.039 4.039
22 C -0.107 4.107
23 C 0.119 3.881
24 F -0.116 7.116
25 C 0.008 3.992
26 F -0.130 7.130
27 C 0.114 3.886
28 F -0.130 7.130
29 H 0.252 0.748
30 H 0.360 0.640
31 H 0.023 0.977
32 H 0.015 0.985
33 H 0.053 0.947
34 H 0.082 0.918
35 H 0.079 0.921
36 H 0.078 0.922
37 H 0.109 0.891
38 H 0.053 0.947
39 H 0.102 0.898
40 H 0.120 0.880
41 H 0.207 0.793
42 H 0.213 0.787
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 31.230 -0.574 6.091 31.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.650 5.650
2 C -0.269 4.269
3 Si 0.789 3.211
4 H -0.197 1.197
5 H -0.230 1.230
6 H -0.186 1.186
7 C -0.329 4.329
8 H 0.059 0.941
9 N -0.362 5.362
10 C 0.037 3.963
11 C 0.044 3.956
12 H 0.102 0.898
13 C -0.161 4.161
14 C -0.151 4.151
15 C -0.169 4.169
16 C -0.051 4.051
17 N -0.336 5.336
18 C 0.296 3.704
19 O -0.371 6.371
20 C -0.156 4.156
21 C -0.057 4.057
22 C -0.125 4.125
23 C 0.098 3.902
24 F -0.094 7.094
25 C -0.013 4.013
26 F -0.109 7.109
27 C 0.093 3.907
28 F -0.109 7.109
29 H 0.061 0.939
30 H 0.193 0.807
31 H 0.040 0.960
32 H 0.033 0.967
33 H 0.072 0.928
34 H 0.101 0.899
35 H 0.098 0.902
36 H 0.097 0.903
37 H 0.128 0.872
38 H 0.072 0.928
39 H 0.120 0.880
40 H 0.137 0.863
41 H 0.223 0.777
42 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges 30.342 -0.801 6.090 30.958
hybrid contribution -1.444 0.351 0.918 1.747
sum 28.898 -0.450 7.007 29.739
Atomic orbital electron populations
1.69912 1.07153 1.26056 1.61911 1.25434 0.96118 1.01136 1.04215
0.85288 0.78183 0.79610 0.77977 1.19692 1.22958 1.18648 1.18950
0.83250 0.92712 1.37971 0.94079 1.42444 1.01796 1.03367 1.88639
1.20894 0.90140 0.88306 0.96952 1.21474 0.92105 0.96705 0.85348
0.89813 1.21883 0.97011 0.94834 1.02366 1.21568 0.93024 1.02661
0.97846 1.21997 1.01607 0.96313 0.96955 1.22974 0.77110 0.99813
1.05250 1.47951 1.08224 1.63890 1.13517 1.18464 0.86868 0.80724
0.84369 1.91366 1.15736 1.49878 1.80112 1.20255 0.99576 1.04160
0.91578 1.21956 0.90817 0.91672 1.01265 1.21614 1.02635 1.00833
0.87397 1.17720 0.92324 0.96211 0.83904 1.91587 1.85981 1.86868
1.44949 1.17672 0.97687 1.05106 0.80834 1.91528 1.83236 1.90759
1.45338 1.17722 0.86011 0.94151 0.92827 1.91583 1.51580 1.70567
1.97139 0.93894 0.80731 0.95970 0.96690 0.92767 0.89896 0.90201
0.90321 0.87229 0.92784 0.87982 0.86298 0.77669 0.76981
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -1.00 -69.78 13.97 21.65 0.30 -69.48 16
2 C -0.08 -5.17 5.50 84.86 0.47 -4.71 16
3 Si 0.96 50.06 27.74 68.60 1.90 51.96 16
4 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16
5 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16
6 H -0.26 -12.54 6.52 99.48 0.65 -11.89 16
7 C -0.20 -12.53 10.22 84.03 0.86 -11.67 16
8 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16
9 N -0.72 -37.08 3.03 -343.44 -1.04 -38.12 16
10 C 0.16 6.89 4.90 86.38 0.42 7.31 16
11 C 0.15 4.12 2.90 44.97 0.13 4.25 16
12 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
13 C -0.12 -2.48 5.35 30.67 0.16 -2.31 16
14 C -0.11 -1.35 5.89 30.73 0.18 -1.17 16
15 C -0.13 -1.26 6.11 30.78 0.19 -1.07 16
16 C 0.07 0.81 4.96 86.36 0.43 1.24 16
17 N -0.60 -15.01 2.97 -798.70 -2.37 -17.39 16
18 C 0.51 17.32 6.91 86.71 0.60 17.92 16
19 O -0.50 -23.83 9.86 -3.99 -0.04 -23.87 16
20 C -0.15 -3.99 5.47 -20.06 -0.11 -4.10 16
21 C -0.04 -0.53 7.39 22.52 0.17 -0.36 16
22 C -0.11 -1.04 10.00 22.27 0.22 -0.82 16
23 C 0.12 2.13 7.31 22.49 0.16 2.30 16
24 F -0.12 -2.09 17.17 44.97 0.77 -1.32 16
25 C 0.01 0.21 7.30 22.41 0.16 0.38 16
26 F -0.13 -3.89 17.09 44.97 0.77 -3.12 16
27 C 0.11 3.58 7.25 22.70 0.16 3.74 16
28 F -0.13 -5.31 16.05 44.97 0.72 -4.58 16
29 H 0.25 16.81 8.31 -92.71 -0.77 16.03 16
30 H 0.36 17.72 5.11 -92.71 -0.47 17.25 16
31 H 0.02 0.95 8.09 -2.39 -0.02 0.93 16
32 H 0.02 0.74 6.30 -2.39 -0.02 0.72 16
33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16
38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
39 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16
40 H 0.12 0.93 3.63 -2.45 -0.01 0.93 16
41 H 0.21 1.18 5.58 -2.91 -0.02 1.17 16
42 H 0.21 -0.04 8.06 -2.91 -0.02 -0.07 16
Total: -1.00 -92.40 344.34 5.78 -86.61
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: 0.56 Total: 8.39 kcal
Atomic # 6 Polarization: 6.71 SS G_CDS: 4.21 Total: 10.92 kcal
Atomic # 7 Polarization: -121.88 SS G_CDS: -3.11 Total: -124.99 kcal
Atomic # 8 Polarization: -23.83 SS G_CDS: -0.04 Total: -23.87 kcal
Atomic # 9 Polarization: -11.29 SS G_CDS: 2.26 Total: -9.02 kcal
Atomic # 14 Polarization: 50.06 SS G_CDS: 1.90 Total: 51.96 kcal
Total: -92.40 5.78 -86.61 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266875845.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.042 kcal
(2) G-P(sol) polarization free energy of solvation -92.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.615 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.656 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds