Wall clock time and date at job start Sat Apr 11 2020 06:31:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.36640 * 126.60259 * 2 1
4 4 C 1.47504 * 125.77089 * 359.97438 * 3 2 1
5 5 O 1.21621 * 119.99544 * 359.97438 * 4 3 2
6 6 N 1.34771 * 120.00039 * 179.97438 * 4 3 2
7 7 C 1.40556 * 119.99551 * 179.97438 * 6 4 3
8 8 C 1.40658 * 126.08687 * 359.96307 * 7 6 4
9 9 N 1.30907 * 108.39004 * 179.77438 * 8 7 6
10 10 N 1.40065 * 108.40706 * 0.40225 * 9 8 7
11 11 C 1.37320 * 126.06888 * 179.85606 * 10 9 8
12 12 H 1.08002 * 120.00430 * 179.69231 * 11 10 9
13 13 C 1.38992 * 119.99664 * 359.41107 * 11 10 9
14 14 N 1.31294 * 120.00157 * 0.27652 * 13 11 10
15 15 Si 1.86803 * 119.99838 * 180.27798 * 13 11 10
16 16 H 1.48504 * 109.47034 * 59.99910 * 15 13 11
17 17 H 1.48498 * 109.47326 * 180.02562 * 15 13 11
18 18 H 1.48501 * 109.46993 * 299.99983 * 15 13 11
19 19 C 1.35688 * 126.08209 * 179.97438 * 7 6 4
20 20 N 1.34406 * 108.46646 * 180.23911 * 3 2 1
21 21 N 1.28754 * 109.57411 * 359.55360 * 20 3 2
22 22 N 1.35062 * 126.60522 * 179.97438 * 2 1 3
23 23 C 1.40352 * 126.61402 * 0.04497 * 22 2 1
24 24 C 1.40387 * 125.97317 * 154.71798 * 23 22 2
25 25 C 1.35221 * 107.87249 * 179.82855 * 24 23 22
26 26 N 1.34983 * 107.86504 * 0.42710 * 25 24 23
27 27 C 1.46493 * 125.97931 * 179.72765 * 26 25 24
28 28 N 1.31222 * 125.96811 * 335.02256 * 23 22 2
29 29 H 1.09008 * 109.47123 * 90.02458 * 1 2 3
30 30 H 1.09004 * 109.47236 * 210.01743 * 1 2 3
31 31 H 1.08998 * 109.47231 * 330.02620 * 1 2 3
32 32 H 0.96997 * 120.00192 * 359.97438 * 6 4 3
33 33 H 1.07996 * 125.80498 * 0.05704 * 8 7 6
34 34 H 0.96996 * 120.00263 * 179.97438 * 14 13 11
35 35 H 1.08003 * 126.24819 * 359.97438 * 19 7 6
36 36 H 1.07994 * 126.06232 * 359.95621 * 24 23 22
37 37 H 1.08005 * 126.06602 * 180.15707 * 25 24 23
38 38 H 1.09000 * 109.47458 * 270.01758 * 27 26 25
39 39 H 1.08994 * 109.47656 * 30.03013 * 27 26 25
40 40 H 1.09008 * 109.46834 * 150.02584 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3217 1.0969 0.0000
4 6 1.8750 2.5027 -0.0005
5 8 0.6871 2.7632 -0.0015
6 7 2.7833 3.4984 0.0000
7 6 2.3576 4.8379 -0.0010
8 6 1.0234 5.2832 -0.0034
9 7 1.0249 6.5922 0.0012
10 7 2.3543 7.0330 -0.0027
11 6 2.7724 8.3410 -0.0026
12 1 3.8277 8.5707 -0.0007
13 6 1.8374 9.3694 -0.0107
14 7 0.5545 9.0903 -0.0131
15 14 2.4062 11.1488 -0.0184
16 1 3.2273 11.4007 -1.2299
17 1 1.2233 12.0465 -0.0260
18 1 3.2201 11.4135 1.1951
19 6 3.1606 5.9316 -0.0001
20 7 3.5990 0.6786 -0.0053
21 7 3.6313 -0.6086 0.0008
22 7 2.3123 -1.0842 0.0005
23 6 1.9071 -2.4280 0.0002
24 6 2.6529 -3.5141 -0.4846
25 6 1.9196 -4.6355 -0.3022
26 7 0.7494 -4.2769 0.2671
27 6 -0.3432 -5.1820 0.6318
28 7 0.7626 -2.8879 0.4479
29 1 -0.3634 -0.0004 -1.0277
30 1 -0.3634 -0.8899 0.5141
31 1 -0.3633 0.8902 0.5134
32 1 3.7308 3.2906 0.0012
33 1 0.1468 4.6524 -0.0039
34 1 -0.0980 9.8080 -0.0184
35 1 4.2407 5.9309 0.0020
36 1 3.6384 -3.4633 -0.9233
37 1 2.2158 -5.6393 -0.5689
38 1 -1.0289 -5.2815 -0.2097
39 1 0.0647 -6.1603 0.8857
40 1 -0.8787 -4.7775 1.4908
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001327798159.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:11
Heat of formation + Delta-G solvation = 246.570203 kcal
Electronic energy + Delta-G solvation = -27841.341033 eV
Core-core repulsion = 23698.447271 eV
Total energy + Delta-G solvation = -4142.893761 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.129 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.60699 -41.63085 -39.74795 -38.31855 -35.45843 -34.21908 -33.20952 -32.96842
-31.96027 -30.78117 -30.18219 -28.47474 -27.28201 -27.11964 -24.92685 -23.83255
-23.27208 -21.77616 -20.90688 -20.31689 -20.02825 -19.29921 -18.30996 -17.33711
-16.94155 -16.60596 -16.15585 -15.82962 -15.38502 -15.07044 -14.50561 -14.36216
-14.28406 -14.12432 -13.83218 -13.52532 -13.38972 -13.19021 -13.07360 -13.02663
-12.88653 -12.76044 -12.09607 -11.67202 -11.61580 -11.44052 -11.35026 -11.19588
-10.99207 -10.89549 -10.51714 -10.10770 -9.72001 -9.34653 -9.25910 -9.10996
-9.01292 -8.75458 -7.99689 -6.62285 -6.50305 -4.16585 0.54169 1.15539
1.37040 1.74886 2.25121 2.29337 3.00684 3.09073 3.12845 3.39381
3.56229 3.83582 3.85846 3.94798 4.02348 4.26512 4.50208 4.52685
4.55444 4.59119 4.72548 4.83120 4.95902 5.01609 5.06652 5.07899
5.25426 5.50043 5.62066 5.70938 5.76341 6.05376 6.29132 6.33429
6.51554 6.53309 6.87939 6.96009 7.01435 7.17569 7.29275 7.80284
7.91938 8.25477 8.34693 8.67128 8.88875 9.43722 9.72950 10.45711
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.040573 B = 0.001905 C = 0.001827
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 689.940193 B =14691.264169 C =15324.157865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.143 3.857
3 C -0.087 4.087
4 C 0.588 3.412
5 O -0.530 6.530
6 N -0.604 5.604
7 C -0.059 4.059
8 C -0.031 4.031
9 N -0.260 5.260
10 N -0.143 5.143
11 C -0.322 4.322
12 H 0.116 0.884
13 C 0.046 3.954
14 N -0.771 5.771
15 Si 0.934 3.066
16 H -0.267 1.267
17 H -0.277 1.277
18 H -0.267 1.267
19 C -0.079 4.079
20 N -0.191 5.191
21 N -0.048 5.048
22 N -0.299 5.299
23 C 0.300 3.700
24 C -0.246 4.246
25 C 0.074 3.926
26 N -0.357 5.357
27 C 0.100 3.900
28 N -0.284 5.284
29 H 0.090 0.910
30 H 0.087 0.913
31 H 0.117 0.883
32 H 0.405 0.595
33 H 0.178 0.822
34 H 0.275 0.725
35 H 0.147 0.853
36 H 0.163 0.837
37 H 0.189 0.811
38 H 0.082 0.918
39 H 0.095 0.905
40 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.675 -28.598 -0.349 28.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.008 3.992
3 C -0.225 4.225
4 C 0.371 3.629
5 O -0.407 6.407
6 N -0.244 5.244
7 C -0.164 4.164
8 C -0.206 4.206
9 N -0.092 5.092
10 N 0.090 4.910
11 C -0.455 4.455
12 H 0.134 0.866
13 C -0.171 4.171
14 N -0.397 5.397
15 Si 0.758 3.242
16 H -0.192 1.192
17 H -0.202 1.202
18 H -0.192 1.192
19 C -0.231 4.231
20 N -0.066 5.066
21 N -0.028 5.028
22 N -0.081 5.081
23 C 0.047 3.953
24 C -0.276 4.276
25 C -0.073 4.073
26 N -0.141 5.141
27 C -0.041 4.041
28 N -0.112 5.112
29 H 0.109 0.891
30 H 0.106 0.894
31 H 0.135 0.865
32 H 0.239 0.761
33 H 0.194 0.806
34 H 0.085 0.915
35 H 0.165 0.835
36 H 0.181 0.819
37 H 0.206 0.794
38 H 0.100 0.900
39 H 0.113 0.887
40 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -0.861 -27.405 0.221 27.419
hybrid contribution 1.264 -0.327 -0.369 1.357
sum 0.403 -27.732 -0.148 27.735
Atomic orbital electron populations
1.20859 0.84143 1.06094 1.04779 1.22102 0.96597 0.85124 0.95389
1.21314 0.88372 0.95791 1.17025 1.16390 0.85705 0.81614 0.79159
1.90665 1.15850 1.82447 1.51753 1.42226 1.09115 1.03630 1.69466
1.17247 0.93758 0.81553 1.23889 1.24122 0.95775 0.92927 1.07818
1.78245 0.96230 1.08959 1.25718 1.44535 1.03242 1.04077 1.39153
1.19829 0.94259 0.77957 1.53428 0.86644 1.25635 0.94865 1.01064
0.95524 1.70207 1.00427 1.33697 1.35394 0.85902 0.78628 0.80183
0.79463 1.19176 1.20181 1.19179 1.21280 0.95897 0.86321 1.19554
1.74598 1.19246 1.03569 1.09174 1.82155 0.93708 1.03338 1.23558
1.46574 1.07331 1.02414 1.51796 1.18428 0.93935 0.82141 1.00845
1.21272 1.04203 0.89278 1.12882 1.22600 0.86233 1.00648 0.97779
1.48327 1.14565 1.03968 1.47238 1.22037 0.87839 0.91288 1.02918
1.77487 1.19072 0.89901 1.24730 0.89146 0.89444 0.86477 0.76076
0.80574 0.91460 0.83527 0.81913 0.79391 0.89985 0.88667 0.88716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.27 9.50 36.00 0.34 -0.93 16
2 C 0.14 2.14 7.00 -81.75 -0.57 1.57 16
3 C -0.09 -1.47 6.99 -83.54 -0.58 -2.05 16
4 C 0.59 11.43 7.79 -12.49 -0.10 11.33 16
5 O -0.53 -11.29 11.87 5.26 0.06 -11.23 16
6 N -0.60 -12.00 5.46 -10.94 -0.06 -12.06 16
7 C -0.06 -1.41 6.90 -83.85 -0.58 -1.99 16
8 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16
9 N -0.26 -7.67 10.40 30.80 0.32 -7.35 16
10 N -0.14 -3.99 3.74 -11.41 -0.04 -4.03 16
11 C -0.32 -8.68 10.25 -14.81 -0.15 -8.83 16
12 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16
13 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16
14 N -0.77 -21.77 11.81 55.50 0.66 -21.12 16
15 Si 0.93 19.22 29.55 -169.99 -5.02 14.20 16
16 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16
17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16
19 C -0.08 -1.94 11.49 -16.39 -0.19 -2.12 16
20 N -0.19 -3.14 12.03 32.85 0.40 -2.74 16
21 N -0.05 -0.74 13.71 60.35 0.83 0.08 16
22 N -0.30 -4.24 3.82 -7.98 -0.03 -4.27 16
23 C 0.30 3.55 7.77 -154.20 -1.20 2.36 16
24 C -0.25 -2.13 10.78 -39.85 -0.43 -2.56 16
25 C 0.07 0.40 11.48 -17.24 -0.20 0.20 16
26 N -0.36 -2.38 4.01 -68.18 -0.27 -2.66 16
27 C 0.10 0.21 11.47 59.84 0.69 0.90 16
28 N -0.28 -3.04 10.70 31.47 0.34 -2.71 16
29 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16
30 H 0.09 1.00 6.38 -51.93 -0.33 0.67 16
31 H 0.12 1.64 6.43 -51.93 -0.33 1.30 16
32 H 0.41 6.95 8.51 -40.82 -0.35 6.61 16
33 H 0.18 4.57 5.91 -52.49 -0.31 4.26 16
34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16
35 H 0.15 3.02 8.06 -52.48 -0.42 2.59 16
36 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16
37 H 0.19 0.15 8.06 -52.48 -0.42 -0.27 16
38 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16
39 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16
40 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16
LS Contribution 356.29 15.07 5.37 5.37
Total: -1.00 -36.41 356.29 -4.54 -40.95
By element:
Atomic # 1 Polarization: 13.42 SS G_CDS: -3.83 Total: 9.59 kcal
Atomic # 6 Polarization: 1.23 SS G_CDS: -3.25 Total: -2.02 kcal
Atomic # 7 Polarization: -58.99 SS G_CDS: 2.13 Total: -56.86 kcal
Atomic # 8 Polarization: -11.29 SS G_CDS: 0.06 Total: -11.23 kcal
Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -36.41 -4.54 -40.95 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327798159.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 287.518 kcal
(2) G-P(sol) polarization free energy of solvation -36.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 251.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) 246.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds