Wall clock time and date at job start Sat Apr 11 2020 06:31:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.36640 * 126.60259 * 2 1
4 4 C 1.47504 * 125.77089 * 359.97438 * 3 2 1
5 5 O 1.21621 * 119.99544 * 359.97438 * 4 3 2
6 6 N 1.34771 * 120.00039 * 179.97438 * 4 3 2
7 7 C 1.40556 * 119.99551 * 179.97438 * 6 4 3
8 8 C 1.40658 * 126.08687 * 359.96307 * 7 6 4
9 9 N 1.30907 * 108.39004 * 179.77438 * 8 7 6
10 10 N 1.40065 * 108.40706 * 0.40225 * 9 8 7
11 11 C 1.37320 * 126.06888 * 179.85606 * 10 9 8
12 12 H 1.08002 * 120.00430 * 179.69231 * 11 10 9
13 13 C 1.38992 * 119.99664 * 359.41107 * 11 10 9
14 14 N 1.31294 * 120.00157 * 0.27652 * 13 11 10
15 15 Si 1.86803 * 119.99838 * 180.27798 * 13 11 10
16 16 H 1.48504 * 109.47034 * 59.99910 * 15 13 11
17 17 H 1.48498 * 109.47326 * 180.02562 * 15 13 11
18 18 H 1.48501 * 109.46993 * 299.99983 * 15 13 11
19 19 C 1.35688 * 126.08209 * 179.97438 * 7 6 4
20 20 N 1.34406 * 108.46646 * 180.23911 * 3 2 1
21 21 N 1.28754 * 109.57411 * 359.55360 * 20 3 2
22 22 N 1.35062 * 126.60522 * 179.97438 * 2 1 3
23 23 C 1.40352 * 126.61402 * 0.04497 * 22 2 1
24 24 C 1.40387 * 125.97317 * 154.71798 * 23 22 2
25 25 C 1.35221 * 107.87249 * 179.82855 * 24 23 22
26 26 N 1.34983 * 107.86504 * 0.42710 * 25 24 23
27 27 C 1.46493 * 125.97931 * 179.72765 * 26 25 24
28 28 N 1.31222 * 125.96811 * 335.02256 * 23 22 2
29 29 H 1.09008 * 109.47123 * 90.02458 * 1 2 3
30 30 H 1.09004 * 109.47236 * 210.01743 * 1 2 3
31 31 H 1.08998 * 109.47231 * 330.02620 * 1 2 3
32 32 H 0.96997 * 120.00192 * 359.97438 * 6 4 3
33 33 H 1.07996 * 125.80498 * 0.05704 * 8 7 6
34 34 H 0.96996 * 120.00263 * 179.97438 * 14 13 11
35 35 H 1.08003 * 126.24819 * 359.97438 * 19 7 6
36 36 H 1.07994 * 126.06232 * 359.95621 * 24 23 22
37 37 H 1.08005 * 126.06602 * 180.15707 * 25 24 23
38 38 H 1.09000 * 109.47458 * 270.01758 * 27 26 25
39 39 H 1.08994 * 109.47656 * 30.03013 * 27 26 25
40 40 H 1.09008 * 109.46834 * 150.02584 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3217 1.0969 0.0000
4 6 1.8750 2.5027 -0.0005
5 8 0.6871 2.7632 -0.0015
6 7 2.7833 3.4984 0.0000
7 6 2.3576 4.8379 -0.0010
8 6 1.0234 5.2832 -0.0034
9 7 1.0249 6.5922 0.0012
10 7 2.3543 7.0330 -0.0027
11 6 2.7724 8.3410 -0.0026
12 1 3.8277 8.5707 -0.0007
13 6 1.8374 9.3694 -0.0107
14 7 0.5545 9.0903 -0.0131
15 14 2.4062 11.1488 -0.0184
16 1 3.2273 11.4007 -1.2299
17 1 1.2233 12.0465 -0.0260
18 1 3.2201 11.4135 1.1951
19 6 3.1606 5.9316 -0.0001
20 7 3.5990 0.6786 -0.0053
21 7 3.6313 -0.6086 0.0008
22 7 2.3123 -1.0842 0.0005
23 6 1.9071 -2.4280 0.0002
24 6 2.6529 -3.5141 -0.4846
25 6 1.9196 -4.6355 -0.3022
26 7 0.7494 -4.2769 0.2671
27 6 -0.3432 -5.1820 0.6318
28 7 0.7626 -2.8879 0.4479
29 1 -0.3634 -0.0004 -1.0277
30 1 -0.3634 -0.8899 0.5141
31 1 -0.3633 0.8902 0.5134
32 1 3.7308 3.2906 0.0012
33 1 0.1468 4.6524 -0.0039
34 1 -0.0980 9.8080 -0.0184
35 1 4.2407 5.9309 0.0020
36 1 3.6384 -3.4633 -0.9233
37 1 2.2158 -5.6393 -0.5689
38 1 -1.0289 -5.2815 -0.2097
39 1 0.0647 -6.1603 0.8857
40 1 -0.8787 -4.7775 1.4908
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001327798159.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:11
Heat of formation + Delta-G solvation = 220.501480 kcal
Electronic energy + Delta-G solvation = -27842.471457 eV
Core-core repulsion = 23698.447271 eV
Total energy + Delta-G solvation = -4144.024186 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.129 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-43.71793 -42.32760 -41.64297 -40.03261 -36.43822 -35.93009 -34.95301 -33.97800
-32.96107 -32.19302 -31.38920 -30.03192 -28.80563 -27.68248 -26.82169 -24.93286
-24.46683 -22.89343 -22.44994 -21.60125 -21.23274 -21.01036 -19.52169 -18.89866
-17.99234 -17.63292 -17.39394 -17.15716 -16.72557 -16.51985 -15.94173 -15.88250
-15.42119 -15.23299 -15.00949 -14.84011 -14.77419 -14.32115 -14.13534 -14.11232
-13.75746 -13.47056 -13.35763 -13.26721 -13.22156 -12.86139 -12.85169 -12.65072
-12.35480 -12.11616 -11.86370 -11.82197 -11.00073 -10.98094 -10.79263 -10.52838
-10.31545 -10.07367 -9.72798 -8.53014 -8.44759 -6.21692 -0.49744 0.30583
0.38038 0.76944 1.32070 1.41488 1.52613 1.57940 1.65825 1.73168
2.00897 2.04070 2.24003 2.61088 2.81454 3.00845 3.11204 3.19349
3.38198 3.57655 3.87120 3.89755 4.31639 4.41238 4.46898 4.47407
4.49235 4.53520 4.61424 4.61847 4.73866 4.77346 4.94248 5.01287
5.03324 5.09161 5.30218 5.42314 5.56956 5.90485 5.96911 6.20571
6.30944 6.53260 6.73106 6.76248 7.23483 7.47061 7.69080 8.54510
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.040573 B = 0.001905 C = 0.001827
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 689.940193 B =14691.264169 C =15324.157865
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.092 4.092
2 C 0.146 3.854
3 C -0.106 4.106
4 C 0.592 3.408
5 O -0.551 6.551
6 N -0.601 5.601
7 C -0.047 4.047
8 C -0.051 4.051
9 N -0.307 5.307
10 N -0.166 5.166
11 C -0.355 4.355
12 H 0.140 0.860
13 C -0.006 4.006
14 N -0.823 5.823
15 Si 1.020 2.980
16 H -0.254 1.254
17 H -0.277 1.277
18 H -0.254 1.254
19 C -0.078 4.078
20 N -0.200 5.200
21 N -0.051 5.051
22 N -0.289 5.289
23 C 0.258 3.742
24 C -0.268 4.268
25 C 0.102 3.898
26 N -0.347 5.347
27 C 0.088 3.912
28 N -0.314 5.314
29 H 0.101 0.899
30 H 0.101 0.899
31 H 0.102 0.898
32 H 0.419 0.581
33 H 0.175 0.825
34 H 0.277 0.723
35 H 0.186 0.814
36 H 0.167 0.833
37 H 0.242 0.758
38 H 0.096 0.904
39 H 0.133 0.867
40 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.908 -31.286 -0.534 31.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.010 3.990
3 C -0.244 4.244
4 C 0.378 3.622
5 O -0.429 6.429
6 N -0.244 5.244
7 C -0.153 4.153
8 C -0.227 4.227
9 N -0.139 5.139
10 N 0.065 4.935
11 C -0.486 4.486
12 H 0.157 0.843
13 C -0.218 4.218
14 N -0.451 5.451
15 Si 0.838 3.162
16 H -0.178 1.178
17 H -0.202 1.202
18 H -0.178 1.178
19 C -0.229 4.229
20 N -0.075 5.075
21 N -0.031 5.031
22 N -0.070 5.070
23 C 0.007 3.993
24 C -0.298 4.298
25 C -0.045 4.045
26 N -0.131 5.131
27 C -0.051 4.051
28 N -0.143 5.143
29 H 0.120 0.880
30 H 0.120 0.880
31 H 0.121 0.879
32 H 0.256 0.744
33 H 0.192 0.808
34 H 0.087 0.913
35 H 0.203 0.797
36 H 0.185 0.815
37 H 0.259 0.741
38 H 0.115 0.885
39 H 0.151 0.849
40 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 0.396 -30.159 0.043 30.162
hybrid contribution 0.813 0.088 -0.298 0.870
sum 1.209 -30.071 -0.255 30.097
Atomic orbital electron populations
1.20838 0.82818 1.05980 1.05423 1.22340 0.97382 0.85019 0.94280
1.20900 0.89218 0.94707 1.19608 1.16696 0.85292 0.82495 0.77754
1.90650 1.16839 1.83113 1.52281 1.42147 1.10051 1.02156 1.70044
1.17295 0.92691 0.83336 1.21932 1.24223 0.97087 0.92590 1.08774
1.78143 0.98084 1.10227 1.27451 1.44825 1.03108 1.05245 1.40295
1.20589 0.95772 0.78098 1.54100 0.84262 1.26881 0.94602 1.06181
0.94120 1.70385 1.02122 1.35431 1.37141 0.84648 0.78158 0.73136
0.80225 1.17782 1.20173 1.17805 1.21950 0.97545 0.85470 1.17924
1.74561 1.19047 1.04125 1.09726 1.82059 0.94657 1.02820 1.23557
1.46615 1.06569 1.03542 1.50302 1.18784 0.95553 0.81367 1.03546
1.21546 1.04939 0.89399 1.13938 1.23356 0.84548 1.01801 0.94834
1.48803 1.15808 1.02822 1.45693 1.22502 0.87350 0.91804 1.03423
1.77374 1.18917 0.92528 1.25522 0.88024 0.88031 0.87928 0.74410
0.80780 0.91332 0.79730 0.81529 0.74141 0.88513 0.84872 0.89138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.36 9.50 71.23 0.68 -1.69 16
2 C 0.15 4.42 7.00 41.69 0.29 4.72 16
3 C -0.11 -3.63 6.99 40.82 0.29 -3.34 16
4 C 0.59 23.56 7.79 86.69 0.68 24.23 16
5 O -0.55 -24.28 11.87 -4.10 -0.05 -24.33 16
6 N -0.60 -24.11 5.46 -306.79 -1.68 -25.79 16
7 C -0.05 -2.27 6.90 37.74 0.26 -2.01 16
8 C -0.05 -2.86 10.85 85.42 0.93 -1.93 16
9 N -0.31 -18.84 10.40 -56.46 -0.59 -19.43 16
10 N -0.17 -9.49 3.74 -190.00 -0.71 -10.20 16
11 C -0.35 -19.23 10.25 84.01 0.86 -18.37 16
12 H 0.14 6.57 7.83 -2.91 -0.02 6.54 16
13 C -0.01 -0.32 5.50 84.95 0.47 0.14 16
14 N -0.82 -48.09 11.81 21.66 0.26 -47.84 16
15 Si 1.02 39.33 29.55 68.60 2.03 41.36 16
16 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16
17 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16
18 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16
19 C -0.08 -3.82 11.49 83.38 0.96 -2.86 16
20 N -0.20 -6.59 12.03 -49.98 -0.60 -7.20 16
21 N -0.05 -1.57 13.71 37.02 0.51 -1.07 16
22 N -0.29 -8.16 3.82 -179.16 -0.68 -8.85 16
23 C 0.26 5.87 7.77 133.25 1.03 6.91 16
24 C -0.27 -4.10 10.78 22.10 0.24 -3.87 16
25 C 0.10 0.70 11.48 83.51 0.96 1.66 16
26 N -0.35 -3.54 4.01 -369.63 -1.48 -5.02 16
27 C 0.09 0.04 11.47 127.77 1.47 1.50 16
28 N -0.31 -6.28 10.70 -54.33 -0.58 -6.86 16
29 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16
30 H 0.10 2.30 6.38 -2.38 -0.02 2.28 16
31 H 0.10 2.97 6.43 -2.39 -0.02 2.96 16
32 H 0.42 14.27 8.51 -92.71 -0.79 13.49 16
33 H 0.18 9.52 5.91 -2.91 -0.02 9.51 16
34 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16
35 H 0.19 7.30 8.06 -2.91 -0.02 7.28 16
36 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16
37 H 0.24 -1.10 8.06 -2.91 -0.02 -1.12 16
38 H 0.10 -0.17 8.14 -2.39 -0.02 -0.18 16
39 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16
40 H 0.09 0.18 8.14 -2.38 -0.02 0.16 16
Total: -1.00 -84.05 356.29 5.86 -78.18
By element:
Atomic # 1 Polarization: 31.59 SS G_CDS: 0.34 Total: 31.93 kcal
Atomic # 6 Polarization: -4.00 SS G_CDS: 9.10 Total: 5.10 kcal
Atomic # 7 Polarization: -126.69 SS G_CDS: -5.56 Total: -132.25 kcal
Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal
Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal
Total: -84.05 5.86 -78.18 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001327798159.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 298.686 kcal
(2) G-P(sol) polarization free energy of solvation -84.046 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.640 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) 220.501 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds