Wall clock time and date at job start Sat Apr 11 2020 06:31:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52995 * 115.56194 * 2 1
4 4 C 1.53003 * 117.49444 * 145.69424 * 2 1 3
5 5 H 1.08994 * 117.49197 * 214.99743 * 4 2 1
6 6 C 1.52996 * 117.49944 * 359.97438 * 4 2 1
7 7 N 1.46507 * 109.47100 * 184.91694 * 6 4 2
8 8 C 1.34775 * 120.00125 * 180.02562 * 7 6 4
9 9 O 1.21366 * 120.00029 * 359.97438 * 8 7 6
10 10 C 1.49304 * 119.99763 * 179.97438 * 8 7 6
11 11 O 1.21402 * 120.00077 * 0.02562 * 10 8 7
12 12 N 1.34775 * 119.99763 * 180.02562 * 10 8 7
13 13 C 1.40296 * 120.00141 * 180.02562 * 12 10 8
14 14 C 1.40718 * 126.09919 * 0.02562 * 13 12 10
15 15 N 1.30875 * 108.37793 * 179.97438 * 14 13 12
16 16 N 1.40063 * 108.43411 * 359.97438 * 15 14 13
17 17 C 1.37295 * 126.05232 * 180.02562 * 16 15 14
18 18 H 1.07998 * 119.99593 * 174.10844 * 17 16 15
19 19 C 1.39004 * 120.00139 * 354.11113 * 17 16 15
20 20 N 1.31275 * 119.99996 * 5.91593 * 19 17 16
21 21 Si 1.86804 * 119.99737 * 185.91882 * 19 17 16
22 22 H 1.48494 * 109.47118 * 94.98143 * 21 19 17
23 23 H 1.48503 * 109.46697 * 214.98049 * 21 19 17
24 24 H 1.48502 * 109.47217 * 334.97505 * 21 19 17
25 25 C 1.35787 * 126.09962 * 179.71754 * 13 12 10
26 26 C 1.52999 * 60.02971 * 107.49593 * 4 2 1
27 27 F 1.39903 * 117.49687 * 107.47388 * 26 4 2
28 28 F 1.39901 * 117.50140 * 252.46634 * 26 4 2
29 29 H 1.08998 * 109.47101 * 274.31462 * 1 2 3
30 30 H 1.09003 * 109.46974 * 34.30417 * 1 2 3
31 31 H 1.08994 * 109.47478 * 154.30474 * 1 2 3
32 32 H 1.09007 * 109.47123 * 205.68682 * 3 2 1
33 33 H 1.09001 * 109.47626 * 325.69287 * 3 2 1
34 34 H 1.09007 * 109.46989 * 85.69512 * 3 2 1
35 35 H 1.09000 * 109.47084 * 64.91341 * 6 4 2
36 36 H 1.09003 * 109.47217 * 304.91134 * 6 4 2
37 37 H 0.97004 * 119.99434 * 0.26789 * 7 6 4
38 38 H 0.97001 * 120.00242 * 359.97438 * 12 10 8
39 39 H 1.08006 * 125.80842 * 359.97438 * 14 13 12
40 40 H 0.97007 * 119.99819 * 179.97438 * 20 19 17
41 41 H 1.08000 * 126.25305 * 359.97385 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1902 1.3802 0.0000
4 6 2.2364 -1.1211 0.7649
5 1 3.1713 -0.8752 1.2685
6 6 1.3587 -2.1560 1.4717
7 7 2.2059 -3.0718 2.2399
8 6 1.6468 -4.0728 2.9483
9 8 0.4415 -4.2152 2.9504
10 6 2.5102 -5.0064 3.7306
11 8 3.7158 -4.8637 3.7289
12 7 1.9511 -6.0077 4.4387
13 6 2.7624 -6.8848 5.1742
14 6 4.1659 -6.8377 5.2637
15 7 4.5629 -7.8148 6.0387
16 7 3.4346 -8.5214 6.4738
17 6 3.4366 -9.6156 7.3030
18 1 2.5025 -10.0289 7.6539
19 6 4.6408 -10.1914 7.6911
20 7 5.7769 -9.6223 7.3613
21 14 4.6424 -11.7750 8.6819
22 1 4.7916 -12.9329 7.7643
23 1 5.7740 -11.7562 9.6433
24 1 3.3628 -11.8947 9.4260
25 6 2.3328 -7.9268 5.9314
26 6 2.2370 -1.1216 -0.7651
27 9 3.4374 -0.8059 -1.4106
28 9 1.4355 -2.0689 -1.4111
29 1 -0.3633 0.0773 1.0247
30 1 -0.3633 0.8489 -0.5792
31 1 -0.3634 -0.9260 -0.4455
32 1 3.1825 1.3084 -0.4455
33 1 1.5812 2.0743 -0.5792
34 1 2.2774 1.7413 1.0248
35 1 0.7930 -2.7199 0.7301
36 1 0.6689 -1.6478 2.1456
37 1 3.1689 -2.9556 2.2413
38 1 0.9878 -6.1216 4.4403
39 1 4.8065 -6.1178 4.7759
40 1 6.6172 -10.0240 7.6324
41 1 1.3066 -8.2303 6.0769
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001330450359.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:16
Heat of formation + Delta-G solvation = -53.415242 kcal
Electronic energy + Delta-G solvation = -28611.995027 eV
Core-core repulsion = 23973.110984 eV
Total energy + Delta-G solvation = -4638.884044 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.129 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-49.07776 -47.73940 -40.57014 -39.59793 -38.67995 -37.85026 -35.14675 -34.12172
-33.17377 -30.38045 -30.25675 -28.38197 -28.10580 -27.08748 -25.20342 -23.59976
-21.84403 -21.07845 -20.62273 -19.83449 -19.46055 -18.33774 -17.88317 -17.49277
-17.04593 -16.53614 -16.33810 -15.71944 -15.56249 -15.30665 -15.14947 -14.59434
-14.40328 -14.28143 -14.14268 -13.98464 -13.80400 -13.64208 -13.48057 -13.34011
-13.02765 -13.00628 -12.89320 -12.73417 -12.44909 -11.77040 -11.75171 -11.61194
-11.34234 -11.27471 -10.94538 -10.80851 -10.55855 -10.31353 -10.17083 -9.41236
-9.25215 -9.18645 -8.89541 -8.14811 -6.80413 -6.62621 -4.29604 1.58769
2.34069 2.52074 2.58771 2.91954 3.02902 3.08178 3.28804 3.53496
3.68591 3.68778 3.77390 3.98844 4.14332 4.27838 4.34619 4.44130
4.58002 4.78073 4.95558 4.96290 5.00529 5.06458 5.13310 5.23820
5.25430 5.28858 5.44146 5.53507 5.67981 6.02083 6.18043 6.33882
6.72034 6.86963 6.87462 7.10857 7.14538 7.69871 7.81007 8.05279
8.16128 8.45136 8.66942 9.29483 9.57763 10.33449
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.032278 B = 0.001814 C = 0.001771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 867.243450 B =15435.777436 C =15802.431622
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.105 4.105
3 C -0.124 4.124
4 C -0.161 4.161
5 H 0.140 0.860
6 C 0.146 3.854
7 N -0.705 5.705
8 C 0.517 3.483
9 O -0.526 6.526
10 C 0.484 3.516
11 O -0.522 6.522
12 N -0.582 5.582
13 C -0.070 4.070
14 C -0.026 4.026
15 N -0.261 5.261
16 N -0.138 5.138
17 C -0.322 4.322
18 H 0.118 0.882
19 C 0.047 3.953
20 N -0.767 5.767
21 Si 0.936 3.064
22 H -0.270 1.270
23 H -0.275 1.275
24 H -0.263 1.263
25 C -0.076 4.076
26 C 0.200 3.800
27 F -0.157 7.157
28 F -0.154 7.154
29 H 0.078 0.922
30 H 0.073 0.927
31 H 0.072 0.928
32 H 0.070 0.930
33 H 0.073 0.927
34 H 0.076 0.924
35 H 0.085 0.915
36 H 0.090 0.910
37 H 0.415 0.585
38 H 0.409 0.591
39 H 0.178 0.822
40 H 0.276 0.724
41 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.137 18.734 -12.648 24.381
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.107 4.107
3 C -0.181 4.181
4 C -0.181 4.181
5 H 0.158 0.842
6 C 0.023 3.977
7 N -0.360 5.360
8 C 0.299 3.701
9 O -0.401 6.401
10 C 0.265 3.735
11 O -0.400 6.400
12 N -0.224 5.224
13 C -0.176 4.176
14 C -0.202 4.202
15 N -0.092 5.092
16 N 0.095 4.905
17 C -0.455 4.455
18 H 0.136 0.864
19 C -0.171 4.171
20 N -0.393 5.393
21 Si 0.760 3.240
22 H -0.196 1.196
23 H -0.201 1.201
24 H -0.187 1.187
25 C -0.228 4.228
26 C 0.164 3.836
27 F -0.137 7.137
28 F -0.134 7.134
29 H 0.097 0.903
30 H 0.092 0.908
31 H 0.091 0.909
32 H 0.089 0.911
33 H 0.092 0.908
34 H 0.095 0.905
35 H 0.103 0.897
36 H 0.108 0.892
37 H 0.252 0.748
38 H 0.244 0.756
39 H 0.194 0.806
40 H 0.087 0.913
41 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -7.885 18.093 -12.135 23.169
hybrid contribution -0.633 -0.418 -0.255 0.800
sum -8.517 17.675 -12.391 23.205
Atomic orbital electron populations
1.21474 0.89647 1.03804 1.03653 1.23029 0.97364 0.92490 0.97838
1.21447 1.01008 0.92180 1.03502 1.24111 1.03316 0.99214 0.91416
0.84181 1.20887 0.92137 0.89503 0.95219 1.45641 1.11903 1.29878
1.48533 1.20301 0.88099 0.81687 0.80020 1.90741 1.14533 1.72129
1.62724 1.19561 0.88027 0.83135 0.82822 1.90661 1.13952 1.72126
1.63240 1.42133 1.10212 1.26419 1.43666 1.17250 0.90995 0.99731
1.09645 1.24146 0.92192 1.00719 1.03105 1.78260 1.06923 1.06863
1.17138 1.44571 1.02463 1.17200 1.26262 1.19934 0.95556 1.03968
1.26006 0.86397 1.25672 0.94614 0.99538 0.97294 1.70211 0.97836
1.35563 1.35690 0.85786 0.78953 0.80189 0.79099 1.19575 1.20052
1.18700 1.21311 0.93171 1.00701 1.07578 1.20366 0.81070 0.93995
0.88198 1.93019 1.44812 1.92486 1.83391 1.93008 1.72105 1.65165
1.83163 0.90318 0.90770 0.90929 0.91107 0.90813 0.90474 0.89664
0.89184 0.74790 0.75553 0.80553 0.91342 0.83307
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.64 8.83 37.16 0.33 -0.32 16
2 C -0.11 -0.63 2.70 -154.47 -0.42 -1.05 16
3 C -0.12 -0.56 9.82 37.15 0.36 -0.19 16
4 C -0.16 -1.13 5.55 -90.62 -0.50 -1.63 16
5 H 0.14 0.82 8.04 -51.93 -0.42 0.40 16
6 C 0.15 1.28 5.02 -4.04 -0.02 1.26 16
7 N -0.70 -7.92 5.55 -60.77 -0.34 -8.26 16
8 C 0.52 7.57 7.88 -11.65 -0.09 7.48 16
9 O -0.53 -8.37 16.47 5.48 0.09 -8.28 16
10 C 0.48 8.58 7.85 -11.65 -0.09 8.49 16
11 O -0.52 -10.36 13.62 5.45 0.07 -10.28 16
12 N -0.58 -10.82 5.45 -10.46 -0.06 -10.88 16
13 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16
14 C -0.03 -0.66 10.85 -17.02 -0.18 -0.85 16
15 N -0.26 -7.46 10.41 30.81 0.32 -7.14 16
16 N -0.14 -3.74 3.73 -11.40 -0.04 -3.78 16
17 C -0.32 -8.39 10.24 -14.82 -0.15 -8.54 16
18 H 0.12 2.74 7.84 -52.49 -0.41 2.33 16
19 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16
20 N -0.77 -21.07 11.84 55.50 0.66 -20.41 16
21 Si 0.94 18.63 29.56 -169.99 -5.02 13.61 16
22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16
23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16
24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16
25 C -0.08 -1.78 11.50 -16.38 -0.19 -1.96 16
26 C 0.20 1.73 5.08 -26.70 -0.14 1.59 16
27 F -0.16 -1.54 16.50 2.25 0.04 -1.50 16
28 F -0.15 -1.59 15.38 2.25 0.03 -1.55 16
29 H 0.08 0.33 7.83 -51.93 -0.41 -0.07 16
30 H 0.07 0.28 7.92 -51.93 -0.41 -0.13 16
31 H 0.07 0.43 7.11 -51.93 -0.37 0.06 16
32 H 0.07 0.36 7.10 -51.93 -0.37 -0.01 16
33 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16
34 H 0.08 0.28 8.14 -51.92 -0.42 -0.15 16
35 H 0.09 0.83 7.06 -51.93 -0.37 0.47 16
36 H 0.09 0.72 7.77 -51.93 -0.40 0.32 16
37 H 0.42 4.28 7.87 -40.82 -0.32 3.96 16
38 H 0.41 6.53 8.29 -40.82 -0.34 6.19 16
39 H 0.18 4.40 5.92 -52.48 -0.31 4.09 16
40 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16
41 H 0.15 2.90 8.06 -52.49 -0.42 2.48 16
LS Contribution 362.73 15.07 5.47 5.47
Total: -1.00 -32.97 362.73 -5.06 -38.04
By element:
Atomic # 1 Polarization: 16.32 SS G_CDS: -4.52 Total: 11.80 kcal
Atomic # 6 Polarization: 4.93 SS G_CDS: -1.77 Total: 3.17 kcal
Atomic # 7 Polarization: -51.00 SS G_CDS: 0.54 Total: -50.46 kcal
Atomic # 8 Polarization: -18.73 SS G_CDS: 0.16 Total: -18.56 kcal
Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal
Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -32.97 -5.06 -38.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330450359.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.377 kcal
(2) G-P(sol) polarization free energy of solvation -32.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.352 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds