Wall clock time and date at job start Sat Apr 11 2020 06:31:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52995 * 115.56194 * 2 1
4 4 C 1.53003 * 117.49444 * 145.69424 * 2 1 3
5 5 H 1.08994 * 117.49197 * 214.99743 * 4 2 1
6 6 C 1.52996 * 117.49944 * 359.97438 * 4 2 1
7 7 N 1.46507 * 109.47100 * 184.91694 * 6 4 2
8 8 C 1.34775 * 120.00125 * 180.02562 * 7 6 4
9 9 O 1.21366 * 120.00029 * 359.97438 * 8 7 6
10 10 C 1.49304 * 119.99763 * 179.97438 * 8 7 6
11 11 O 1.21402 * 120.00077 * 0.02562 * 10 8 7
12 12 N 1.34775 * 119.99763 * 180.02562 * 10 8 7
13 13 C 1.40296 * 120.00141 * 180.02562 * 12 10 8
14 14 C 1.40718 * 126.09919 * 0.02562 * 13 12 10
15 15 N 1.30875 * 108.37793 * 179.97438 * 14 13 12
16 16 N 1.40063 * 108.43411 * 359.97438 * 15 14 13
17 17 C 1.37295 * 126.05232 * 180.02562 * 16 15 14
18 18 H 1.07998 * 119.99593 * 174.10844 * 17 16 15
19 19 C 1.39004 * 120.00139 * 354.11113 * 17 16 15
20 20 N 1.31275 * 119.99996 * 5.91593 * 19 17 16
21 21 Si 1.86804 * 119.99737 * 185.91882 * 19 17 16
22 22 H 1.48494 * 109.47118 * 94.98143 * 21 19 17
23 23 H 1.48503 * 109.46697 * 214.98049 * 21 19 17
24 24 H 1.48502 * 109.47217 * 334.97505 * 21 19 17
25 25 C 1.35787 * 126.09962 * 179.71754 * 13 12 10
26 26 C 1.52999 * 60.02971 * 107.49593 * 4 2 1
27 27 F 1.39903 * 117.49687 * 107.47388 * 26 4 2
28 28 F 1.39901 * 117.50140 * 252.46634 * 26 4 2
29 29 H 1.08998 * 109.47101 * 274.31462 * 1 2 3
30 30 H 1.09003 * 109.46974 * 34.30417 * 1 2 3
31 31 H 1.08994 * 109.47478 * 154.30474 * 1 2 3
32 32 H 1.09007 * 109.47123 * 205.68682 * 3 2 1
33 33 H 1.09001 * 109.47626 * 325.69287 * 3 2 1
34 34 H 1.09007 * 109.46989 * 85.69512 * 3 2 1
35 35 H 1.09000 * 109.47084 * 64.91341 * 6 4 2
36 36 H 1.09003 * 109.47217 * 304.91134 * 6 4 2
37 37 H 0.97004 * 119.99434 * 0.26789 * 7 6 4
38 38 H 0.97001 * 120.00242 * 359.97438 * 12 10 8
39 39 H 1.08006 * 125.80842 * 359.97438 * 14 13 12
40 40 H 0.97007 * 119.99819 * 179.97438 * 20 19 17
41 41 H 1.08000 * 126.25305 * 359.97385 * 25 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1902 1.3802 0.0000
4 6 2.2364 -1.1211 0.7649
5 1 3.1713 -0.8752 1.2685
6 6 1.3587 -2.1560 1.4717
7 7 2.2059 -3.0718 2.2399
8 6 1.6468 -4.0728 2.9483
9 8 0.4415 -4.2152 2.9504
10 6 2.5102 -5.0064 3.7306
11 8 3.7158 -4.8637 3.7289
12 7 1.9511 -6.0077 4.4387
13 6 2.7624 -6.8848 5.1742
14 6 4.1659 -6.8377 5.2637
15 7 4.5629 -7.8148 6.0387
16 7 3.4346 -8.5214 6.4738
17 6 3.4366 -9.6156 7.3030
18 1 2.5025 -10.0289 7.6539
19 6 4.6408 -10.1914 7.6911
20 7 5.7769 -9.6223 7.3613
21 14 4.6424 -11.7750 8.6819
22 1 4.7916 -12.9329 7.7643
23 1 5.7740 -11.7562 9.6433
24 1 3.3628 -11.8947 9.4260
25 6 2.3328 -7.9268 5.9314
26 6 2.2370 -1.1216 -0.7651
27 9 3.4374 -0.8059 -1.4106
28 9 1.4355 -2.0689 -1.4111
29 1 -0.3633 0.0773 1.0247
30 1 -0.3633 0.8489 -0.5792
31 1 -0.3634 -0.9260 -0.4455
32 1 3.1825 1.3084 -0.4455
33 1 1.5812 2.0743 -0.5792
34 1 2.2774 1.7413 1.0248
35 1 0.7930 -2.7199 0.7301
36 1 0.6689 -1.6478 2.1456
37 1 3.1689 -2.9556 2.2413
38 1 0.9878 -6.1216 4.4403
39 1 4.8065 -6.1178 4.7759
40 1 6.6172 -10.0240 7.6324
41 1 1.3066 -8.2303 6.0769
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001330450359.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:16
Heat of formation + Delta-G solvation = -76.647153 kcal
Electronic energy + Delta-G solvation = -28613.002439 eV
Core-core repulsion = 23973.110984 eV
Total energy + Delta-G solvation = -4639.891455 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.129 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-49.76580 -48.44686 -42.04489 -41.20611 -39.67178 -38.98569 -36.42379 -35.57757
-34.89905 -32.30142 -30.91797 -29.90672 -28.77960 -27.97252 -26.92221 -24.96530
-22.93087 -22.52290 -21.85814 -21.28337 -20.58613 -19.58106 -19.14327 -18.66347
-17.79472 -17.67819 -17.44763 -17.09840 -16.92142 -16.68565 -16.48233 -15.72298
-15.66962 -15.15377 -15.11945 -15.06971 -14.90792 -14.82470 -14.71513 -14.37496
-14.10608 -13.91653 -13.52506 -13.43817 -13.38552 -13.15802 -13.01490 -12.93380
-12.87197 -12.54324 -12.19580 -12.06679 -11.97479 -11.42962 -11.08052 -10.87377
-10.81259 -10.57843 -10.34664 -10.14366 -8.62717 -8.49707 -6.26927 0.25527
1.21497 1.29060 1.41619 1.59056 1.71862 1.91708 1.94328 2.03061
2.11537 2.52053 2.52600 2.86923 3.06529 3.08346 3.19969 3.50379
3.52984 3.80826 3.90418 4.21743 4.39577 4.40226 4.44578 4.52604
4.72184 4.78196 4.86134 4.89255 4.93772 4.95470 4.98424 5.06314
5.21210 5.21984 5.30130 5.32109 5.87911 5.95396 6.23399 6.45368
6.66205 6.75121 7.05670 7.41295 7.62560 8.49814
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.032278 B = 0.001814 C = 0.001771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 867.243450 B =15435.777436 C =15802.431622
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.081 4.081
3 C -0.125 4.125
4 C -0.155 4.155
5 H 0.155 0.845
6 C 0.145 3.855
7 N -0.689 5.689
8 C 0.528 3.472
9 O -0.536 6.536
10 C 0.486 3.514
11 O -0.543 6.543
12 N -0.581 5.581
13 C -0.057 4.057
14 C -0.048 4.048
15 N -0.309 5.309
16 N -0.164 5.164
17 C -0.353 4.353
18 H 0.142 0.858
19 C -0.005 4.005
20 N -0.821 5.821
21 Si 1.019 2.981
22 H -0.267 1.267
23 H -0.276 1.276
24 H -0.243 1.243
25 C -0.073 4.073
26 C 0.169 3.831
27 F -0.168 7.168
28 F -0.169 7.169
29 H 0.091 0.909
30 H 0.088 0.912
31 H 0.061 0.939
32 H 0.063 0.937
33 H 0.086 0.914
34 H 0.091 0.909
35 H 0.078 0.922
36 H 0.106 0.894
37 H 0.421 0.579
38 H 0.424 0.576
39 H 0.176 0.824
40 H 0.278 0.722
41 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.194 19.680 -12.482 25.854
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.083 4.083
3 C -0.182 4.182
4 C -0.175 4.175
5 H 0.172 0.828
6 C 0.023 3.977
7 N -0.343 5.343
8 C 0.308 3.692
9 O -0.413 6.413
10 C 0.268 3.732
11 O -0.421 6.421
12 N -0.226 5.226
13 C -0.163 4.163
14 C -0.223 4.223
15 N -0.141 5.141
16 N 0.068 4.932
17 C -0.484 4.484
18 H 0.159 0.841
19 C -0.217 4.217
20 N -0.448 5.448
21 Si 0.838 3.162
22 H -0.192 1.192
23 H -0.201 1.201
24 H -0.166 1.166
25 C -0.224 4.224
26 C 0.133 3.867
27 F -0.149 7.149
28 F -0.150 7.150
29 H 0.110 0.890
30 H 0.107 0.893
31 H 0.080 0.920
32 H 0.082 0.918
33 H 0.105 0.895
34 H 0.110 0.890
35 H 0.096 0.904
36 H 0.124 0.876
37 H 0.258 0.742
38 H 0.262 0.738
39 H 0.193 0.807
40 H 0.088 0.912
41 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -9.972 19.088 -12.004 24.656
hybrid contribution -0.051 -0.528 -0.457 0.700
sum -10.023 18.560 -12.461 24.500
Atomic orbital electron populations
1.21565 0.88725 1.03959 1.04675 1.23163 0.97948 0.92411 0.94767
1.21523 1.00707 0.91320 1.04656 1.24123 1.03906 0.99298 0.90140
0.82783 1.21049 0.92219 0.89326 0.95114 1.45651 1.12556 1.28877
1.47174 1.19594 0.87325 0.81951 0.80350 1.90749 1.14551 1.72582
1.63433 1.20225 0.88145 0.82861 0.81990 1.90654 1.15296 1.72546
1.63608 1.42070 1.10580 1.26247 1.43706 1.17287 0.90352 0.99777
1.08911 1.24258 0.93809 1.00702 1.03566 1.78154 1.08984 1.08237
1.18678 1.44846 1.02852 1.18035 1.27449 1.20654 0.96999 1.04200
1.26586 0.84078 1.26886 0.93773 1.03073 0.97997 1.70377 0.98739
1.37840 1.37880 0.84571 0.79607 0.74790 0.77217 1.19234 1.20064
1.16566 1.22018 0.94183 0.99928 1.06270 1.20859 0.81353 0.95747
0.88765 1.92987 1.45582 1.92615 1.83703 1.92968 1.72467 1.65976
1.83557 0.89012 0.89274 0.92014 0.91814 0.89504 0.88978 0.90373
0.87563 0.74157 0.73826 0.80716 0.91238 0.79424
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.00 8.83 71.98 0.64 -0.36 16
2 C -0.08 -0.79 2.70 -52.16 -0.14 -0.94 16
3 C -0.13 -0.80 9.82 71.98 0.71 -0.09 16
4 C -0.16 -1.88 5.55 -10.79 -0.06 -1.94 16
5 H 0.15 1.44 8.04 -2.39 -0.02 1.42 16
6 C 0.15 2.25 5.02 86.38 0.43 2.68 16
7 N -0.69 -14.25 5.55 -464.55 -2.58 -16.83 16
8 C 0.53 14.57 7.88 87.22 0.69 15.26 16
9 O -0.54 -15.98 16.47 -3.30 -0.05 -16.03 16
10 C 0.49 16.80 7.85 87.22 0.69 17.48 16
11 O -0.54 -21.46 13.62 -3.41 -0.05 -21.51 16
12 N -0.58 -20.98 5.45 -305.34 -1.66 -22.65 16
13 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16
14 C -0.05 -2.53 10.85 85.44 0.93 -1.60 16
15 N -0.31 -18.25 10.41 -56.43 -0.59 -18.84 16
16 N -0.16 -8.97 3.73 -189.98 -0.71 -9.68 16
17 C -0.35 -18.44 10.24 84.02 0.86 -17.58 16
18 H 0.14 6.38 7.84 -2.91 -0.02 6.36 16
19 C -0.01 -0.26 5.50 84.96 0.47 0.21 16
20 N -0.82 -46.61 11.84 21.66 0.26 -46.36 16
21 Si 1.02 38.03 29.56 68.60 2.03 40.06 16
22 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16
23 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16
24 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16
25 C -0.07 -3.36 11.50 83.41 0.96 -2.40 16
26 C 0.17 2.76 5.08 30.62 0.16 2.91 16
27 F -0.17 -3.24 16.50 44.97 0.74 -2.50 16
28 F -0.17 -3.45 15.38 44.97 0.69 -2.76 16
29 H 0.09 0.49 7.83 -2.39 -0.02 0.47 16
30 H 0.09 0.43 7.92 -2.39 -0.02 0.41 16
31 H 0.06 0.63 7.11 -2.39 -0.02 0.61 16
32 H 0.06 0.53 7.10 -2.38 -0.02 0.51 16
33 H 0.09 0.36 7.92 -2.39 -0.02 0.34 16
34 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16
35 H 0.08 1.40 7.06 -2.39 -0.02 1.39 16
36 H 0.11 1.39 7.77 -2.39 -0.02 1.37 16
37 H 0.42 8.01 7.87 -92.71 -0.73 7.28 16
38 H 0.42 12.75 8.29 -92.71 -0.77 11.99 16
39 H 0.18 9.05 5.92 -2.91 -0.02 9.03 16
40 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16
41 H 0.19 6.86 8.06 -2.91 -0.02 6.84 16
Total: -1.00 -73.96 362.73 4.28 -69.68
By element:
Atomic # 1 Polarization: 36.49 SS G_CDS: -0.38 Total: 36.12 kcal
Atomic # 6 Polarization: 4.72 SS G_CDS: 6.58 Total: 11.29 kcal
Atomic # 7 Polarization: -109.07 SS G_CDS: -5.28 Total: -114.35 kcal
Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal
Atomic # 9 Polarization: -6.69 SS G_CDS: 1.43 Total: -5.26 kcal
Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal
Total: -73.96 4.28 -69.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330450359.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.969 kcal
(2) G-P(sol) polarization free energy of solvation -73.958 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.928 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds