Wall clock time and date at job start Sat Apr 11 2020 06:31:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00259 * 2 1
4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1
5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1
6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1
7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1
9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1
10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2
11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7
12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9
13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9
14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10
15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11
16 16 H 1.08998 * 110.48342 * 80.73709 * 15 14 13
17 17 N 1.46498 * 110.59848 * 203.32368 * 15 14 13
18 18 C 1.34777 * 120.00044 * 269.83809 * 17 15 14
19 19 O 1.21567 * 120.00285 * 0.02562 * 18 17 15
20 20 C 1.47732 * 119.99759 * 179.97438 * 18 17 15
21 21 C 1.39624 * 120.10363 * 359.72800 * 20 18 17
22 22 C 1.38081 * 119.89919 * 179.71881 * 21 20 18
23 23 F 1.35092 * 119.95042 * 180.31847 * 22 21 20
24 24 C 1.38784 * 120.09821 * 0.57996 * 22 21 20
25 25 F 1.35102 * 119.89927 * 179.71507 * 24 22 21
26 26 C 1.38783 * 120.20575 * 359.69622 * 24 22 21
27 27 F 1.35097 * 119.95298 * 180.02562 * 26 24 22
28 28 C 1.38075 * 120.09688 * 0.02562 * 26 24 22
29 29 C 1.53877 * 110.03508 * 174.99756 * 11 10 9
30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3
31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2
32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7
33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7
34 34 H 1.09000 * 110.48832 * 335.78097 * 13 11 10
35 35 H 1.09000 * 110.48619 * 98.42458 * 13 11 10
36 36 H 1.09003 * 110.75717 * 279.62730 * 14 13 11
37 37 H 1.08999 * 110.75960 * 156.25494 * 14 13 11
38 38 H 0.96997 * 120.00308 * 89.84738 * 17 15 14
39 39 H 1.07995 * 120.05195 * 0.02562 * 21 20 18
40 40 H 1.08002 * 120.04639 * 180.02562 * 28 26 24
41 41 H 1.08996 * 110.03408 * 238.57457 * 29 11 10
42 42 H 1.09006 * 110.02846 * 0.02562 * 29 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0463 1.4002
5 1 3.5478 1.4401 -0.7000
6 1 1.4477 2.6527 -0.6999
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3256 -2.3881 -0.0016
10 6 2.0580 -3.6568 -0.0016
11 6 1.0637 -4.8197 -0.0022
12 1 0.3597 -4.7082 -0.8269
13 6 0.3042 -4.8663 1.3396
14 6 0.1413 -6.3787 1.6316
15 6 1.4871 -6.9683 1.1414
16 1 2.2620 -6.8283 1.8950
17 7 1.3396 -8.3894 0.8172
18 6 1.5528 -9.3226 1.7659
19 8 1.8669 -8.9852 2.8908
20 6 1.4035 -10.7556 1.4392
21 6 1.0361 -11.1452 0.1497
22 6 0.9035 -12.4860 -0.1527
23 9 0.5544 -12.8644 -1.4017
24 6 1.1230 -13.4452 0.8260
25 9 0.9864 -14.7556 0.5273
26 6 1.4826 -13.0624 2.1106
27 9 1.6955 -14.0004 3.0593
28 6 1.6232 -11.7242 2.4206
29 6 1.8158 -6.1562 -0.1283
30 1 -0.4850 -0.8401 -0.0004
31 1 0.3556 -2.3880 -0.0016
32 1 2.6853 -3.7142 -0.8912
33 1 2.6841 -3.7150 0.8887
34 1 0.8880 -4.3869 2.1254
35 1 -0.6711 -4.3893 1.2427
36 1 -0.6918 -6.7941 1.0645
37 1 0.0088 -6.5540 2.6992
38 1 1.0887 -8.6586 -0.0802
39 1 0.8609 -10.3993 -0.6114
40 1 1.9036 -11.4273 3.4204
41 1 1.4763 -6.6937 -1.0137
42 1 2.8892 -5.9763 -0.1886
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001332309590.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:34
Heat of formation + Delta-G solvation = -139.414423 kcal
Electronic energy + Delta-G solvation = -28408.941232 eV
Core-core repulsion = 23746.408022 eV
Total energy + Delta-G solvation = -4662.533210 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 1.32 seconds
Orbital eigenvalues (eV)
-50.40710 -49.80796 -49.08577 -40.84899 -39.05185 -37.97581 -35.20209 -33.88942
-31.76470 -31.31811 -30.84582 -28.84519 -27.75069 -24.99707 -24.17059 -23.87553
-22.44628 -21.53107 -20.76792 -19.74552 -19.20369 -18.60940 -18.30365 -17.43096
-17.25407 -17.13479 -16.86820 -16.23875 -16.09171 -15.59500 -15.56629 -15.36451
-15.24763 -15.02217 -14.92018 -14.16708 -13.85136 -13.65530 -13.49368 -13.32828
-13.28558 -13.22309 -12.55493 -12.44356 -12.28639 -11.92706 -11.53230 -11.07265
-10.83801 -10.76278 -10.55453 -10.50004 -10.40625 -10.21706 -10.00863 -9.74473
-9.69431 -9.34881 -9.15975 -8.87225 -6.99464 -6.10490 -3.09678 -0.39153
0.00162 1.86968 2.44486 2.68225 2.84879 3.37993 3.46513 3.51608
3.56513 3.62745 3.70391 3.82803 4.09342 4.47886 4.57660 4.65511
4.67836 4.71351 4.87755 4.91156 5.02510 5.18677 5.33929 5.41697
5.43868 5.46992 5.61815 5.70773 5.74388 5.78636 5.92777 5.99078
6.04639 6.13934 6.27908 6.38813 6.49797 6.69060 6.81264 7.01547
7.68696 7.81527 8.76281 9.23962 10.10299 10.25369 11.38319
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.030706 B = 0.001735 C = 0.001686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.659608 B =16136.846662 C =16607.682460
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.945 5.945
2 C -0.047 4.047
3 Si 1.083 2.917
4 H -0.295 1.295
5 H -0.295 1.295
6 H -0.288 1.288
7 C -0.331 4.331
8 H 0.064 0.936
9 N -0.743 5.743
10 C 0.164 3.836
11 C -0.097 4.097
12 H 0.073 0.927
13 C -0.112 4.112
14 C -0.133 4.133
15 C 0.138 3.862
16 H 0.100 0.900
17 N -0.711 5.711
18 C 0.560 3.440
19 O -0.520 6.520
20 C -0.082 4.082
21 C -0.105 4.105
22 C 0.097 3.903
23 F -0.113 7.113
24 C 0.055 3.945
25 F -0.111 7.111
26 C 0.096 3.904
27 F -0.113 7.113
28 C -0.077 4.077
29 C -0.121 4.121
30 H 0.255 0.745
31 H 0.367 0.633
32 H 0.018 0.982
33 H 0.021 0.979
34 H 0.074 0.926
35 H 0.068 0.932
36 H 0.067 0.933
37 H 0.069 0.931
38 H 0.399 0.601
39 H 0.159 0.841
40 H 0.170 0.830
41 H 0.067 0.933
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.337 -29.565 0.638 29.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.244 4.244
3 Si 0.914 3.086
4 H -0.223 1.223
5 H -0.222 1.222
6 H -0.214 1.214
7 C -0.462 4.462
8 H 0.082 0.918
9 N -0.389 5.389
10 C 0.037 3.963
11 C -0.117 4.117
12 H 0.092 0.908
13 C -0.150 4.150
14 C -0.172 4.172
15 C 0.034 3.966
16 H 0.118 0.882
17 N -0.362 5.362
18 C 0.345 3.655
19 O -0.397 6.397
20 C -0.085 4.085
21 C -0.124 4.124
22 C 0.076 3.924
23 F -0.092 7.092
24 C 0.033 3.967
25 F -0.090 7.090
26 C 0.075 3.925
27 F -0.091 7.091
28 C -0.097 4.097
29 C -0.160 4.160
30 H 0.066 0.934
31 H 0.200 0.800
32 H 0.035 0.965
33 H 0.039 0.961
34 H 0.093 0.907
35 H 0.087 0.913
36 H 0.086 0.914
37 H 0.088 0.912
38 H 0.235 0.765
39 H 0.177 0.823
40 H 0.187 0.813
41 H 0.086 0.914
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 1.660 -27.735 1.407 27.820
hybrid contribution -0.288 -2.446 -0.676 2.554
sum 1.373 -30.181 0.731 30.221
Atomic orbital electron populations
1.70855 1.06025 1.28370 1.53836 1.25777 0.97085 1.01008 1.00558
0.83193 0.73857 0.75320 0.76253 1.22316 1.22188 1.21399 1.20067
0.92040 0.85891 1.48183 0.91798 1.42356 1.04872 1.00954 1.90706
1.20729 0.92915 0.84858 0.97803 1.21910 0.97753 0.93900 0.98109
0.90805 1.22329 1.00948 0.94301 0.97394 1.22898 0.96421 0.96489
1.01381 1.22069 0.98871 0.77354 0.98257 0.88153 1.46053 1.69809
1.06901 1.13460 1.17813 0.77872 0.84501 0.85296 1.90850 1.46516
1.81724 1.20607 1.19698 1.01575 0.94488 0.92759 1.21319 0.99559
0.94063 0.97492 1.17108 1.03248 0.91832 0.80213 1.91612 1.89209
1.91770 1.36571 1.17831 1.06687 0.79181 0.92952 1.91598 1.93161
1.30790 1.93402 1.17159 1.03723 0.86940 0.84638 1.91611 1.92110
1.63489 1.61893 1.21279 0.97428 0.88787 1.02169 1.22408 1.01672
0.95771 0.96110 0.93425 0.80015 0.96458 0.96135 0.90749 0.91306
0.91384 0.91190 0.76486 0.82341 0.81292 0.91415 0.90541
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -29.16 13.70 55.49 0.76 -28.40 16
2 C -0.05 -1.37 5.50 -17.43 -0.10 -1.46 16
3 Si 1.08 25.99 29.92 -169.99 -5.09 20.90 16
4 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16
5 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
7 C -0.33 -9.35 9.99 -15.06 -0.15 -9.50 16
8 H 0.06 1.79 7.83 -52.49 -0.41 1.37 16
9 N -0.74 -18.44 5.45 -59.91 -0.33 -18.77 16
10 C 0.16 3.19 5.31 -4.05 -0.02 3.17 16
11 C -0.10 -1.41 2.96 -89.50 -0.26 -1.67 16
12 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
13 C -0.11 -1.58 6.08 -25.07 -0.15 -1.73 16
14 C -0.13 -1.50 6.58 -24.74 -0.16 -1.67 16
15 C 0.14 1.43 3.21 -66.28 -0.21 1.22 16
16 H 0.10 1.22 7.55 -51.93 -0.39 0.82 16
17 N -0.71 -5.57 5.11 -53.18 -0.27 -5.84 16
18 C 0.56 5.14 7.77 -12.38 -0.10 5.05 16
19 O -0.52 -6.74 15.99 5.31 0.08 -6.65 16
20 C -0.08 -0.55 5.87 -104.98 -0.62 -1.17 16
21 C -0.10 -0.53 9.51 -39.12 -0.37 -0.90 16
22 C 0.10 0.62 7.29 -39.44 -0.29 0.34 16
23 F -0.11 -0.83 17.17 2.25 0.04 -0.79 16
24 C 0.06 0.41 7.32 -39.18 -0.29 0.12 16
25 F -0.11 -0.97 17.08 2.25 0.04 -0.93 16
26 C 0.10 0.69 7.29 -39.44 -0.29 0.40 16
27 F -0.11 -0.92 17.17 2.25 0.04 -0.88 16
28 C -0.08 -0.52 9.57 -39.12 -0.37 -0.90 16
29 C -0.12 -1.29 6.19 -25.62 -0.16 -1.45 16
30 H 0.25 7.70 6.77 -40.82 -0.28 7.42 16
31 H 0.37 9.24 6.38 -40.82 -0.26 8.98 16
32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16
33 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16
34 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16
35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.40 1.94 6.39 -40.82 -0.26 1.68 16
39 H 0.16 0.39 6.40 -52.49 -0.34 0.06 16
40 H 0.17 1.11 7.65 -52.49 -0.40 0.71 16
41 H 0.07 0.57 7.73 -51.93 -0.40 0.17 16
42 H 0.08 0.84 7.67 -51.93 -0.40 0.44 16
LS Contribution 364.23 15.07 5.49 5.49
Total: -1.00 -33.43 364.23 -7.64 -41.07
By element:
Atomic # 1 Polarization: 9.84 SS G_CDS: -4.87 Total: 4.98 kcal
Atomic # 6 Polarization: -6.62 SS G_CDS: -3.54 Total: -10.16 kcal
Atomic # 7 Polarization: -53.18 SS G_CDS: 0.16 Total: -53.01 kcal
Atomic # 8 Polarization: -6.74 SS G_CDS: 0.08 Total: -6.65 kcal
Atomic # 9 Polarization: -2.72 SS G_CDS: 0.12 Total: -2.61 kcal
Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.90 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -33.43 -7.64 -41.07 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332309590.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -98.346 kcal
(2) G-P(sol) polarization free energy of solvation -33.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.414 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.32 seconds