Wall clock time and date at job start Sat Apr 11 2020 06:31:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86800 * 120.00259 * 2 1
4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1
5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1
6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1
7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1
9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1
10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2
11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7
12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9
13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9
14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10
15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11
16 16 H 1.08998 * 110.48342 * 80.73709 * 15 14 13
17 17 N 1.46498 * 110.59848 * 203.32368 * 15 14 13
18 18 C 1.34777 * 120.00044 * 269.83809 * 17 15 14
19 19 O 1.21567 * 120.00285 * 0.02562 * 18 17 15
20 20 C 1.47732 * 119.99759 * 179.97438 * 18 17 15
21 21 C 1.39624 * 120.10363 * 359.72800 * 20 18 17
22 22 C 1.38081 * 119.89919 * 179.71881 * 21 20 18
23 23 F 1.35092 * 119.95042 * 180.31847 * 22 21 20
24 24 C 1.38784 * 120.09821 * 0.57996 * 22 21 20
25 25 F 1.35102 * 119.89927 * 179.71507 * 24 22 21
26 26 C 1.38783 * 120.20575 * 359.69622 * 24 22 21
27 27 F 1.35097 * 119.95298 * 180.02562 * 26 24 22
28 28 C 1.38075 * 120.09688 * 0.02562 * 26 24 22
29 29 C 1.53877 * 110.03508 * 174.99756 * 11 10 9
30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3
31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2
32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7
33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7
34 34 H 1.09000 * 110.48832 * 335.78097 * 13 11 10
35 35 H 1.09000 * 110.48619 * 98.42458 * 13 11 10
36 36 H 1.09003 * 110.75717 * 279.62730 * 14 13 11
37 37 H 1.08999 * 110.75960 * 156.25494 * 14 13 11
38 38 H 0.96997 * 120.00308 * 89.84738 * 17 15 14
39 39 H 1.07995 * 120.05195 * 0.02562 * 21 20 18
40 40 H 1.08002 * 120.04639 * 180.02562 * 28 26 24
41 41 H 1.08996 * 110.03408 * 238.57457 * 29 11 10
42 42 H 1.09006 * 110.02846 * 0.02562 * 29 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4977 2.0463 1.4002
5 1 3.5478 1.4401 -0.7000
6 1 1.4477 2.6527 -0.6999
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3256 -2.3881 -0.0016
10 6 2.0580 -3.6568 -0.0016
11 6 1.0637 -4.8197 -0.0022
12 1 0.3597 -4.7082 -0.8269
13 6 0.3042 -4.8663 1.3396
14 6 0.1413 -6.3787 1.6316
15 6 1.4871 -6.9683 1.1414
16 1 2.2620 -6.8283 1.8950
17 7 1.3396 -8.3894 0.8172
18 6 1.5528 -9.3226 1.7659
19 8 1.8669 -8.9852 2.8908
20 6 1.4035 -10.7556 1.4392
21 6 1.0361 -11.1452 0.1497
22 6 0.9035 -12.4860 -0.1527
23 9 0.5544 -12.8644 -1.4017
24 6 1.1230 -13.4452 0.8260
25 9 0.9864 -14.7556 0.5273
26 6 1.4826 -13.0624 2.1106
27 9 1.6955 -14.0004 3.0593
28 6 1.6232 -11.7242 2.4206
29 6 1.8158 -6.1562 -0.1283
30 1 -0.4850 -0.8401 -0.0004
31 1 0.3556 -2.3880 -0.0016
32 1 2.6853 -3.7142 -0.8912
33 1 2.6841 -3.7150 0.8887
34 1 0.8880 -4.3869 2.1254
35 1 -0.6711 -4.3893 1.2427
36 1 -0.6918 -6.7941 1.0645
37 1 0.0088 -6.5540 2.6992
38 1 1.0887 -8.6586 -0.0802
39 1 0.8609 -10.3993 -0.6114
40 1 1.9036 -11.4273 3.4204
41 1 1.4763 -6.6937 -1.0137
42 1 2.8892 -5.9763 -0.1886
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001332309590.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:33
Heat of formation + Delta-G solvation = -160.032216 kcal
Electronic energy + Delta-G solvation = -28409.835287 eV
Core-core repulsion = 23746.408022 eV
Total energy + Delta-G solvation = -4663.427264 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-50.99392 -50.36548 -49.67575 -41.56408 -39.87343 -38.86952 -36.76235 -35.13757
-33.06297 -32.00350 -31.80183 -30.06633 -28.90523 -26.17898 -25.31767 -24.54307
-24.17723 -22.27279 -21.62830 -20.89439 -19.91185 -19.28827 -19.18758 -18.88078
-18.00140 -17.79887 -17.61491 -17.03984 -16.79233 -16.65165 -16.28510 -16.13760
-16.05961 -15.87571 -15.69451 -15.60024 -15.35316 -15.09536 -14.88181 -14.34829
-14.01709 -13.87880 -13.65128 -13.20244 -13.00846 -12.90651 -12.78208 -12.62891
-12.48183 -12.07518 -11.86247 -11.79838 -11.75431 -11.47912 -11.32813 -11.15479
-10.90543 -10.34339 -10.23927 -10.07178 -9.08657 -8.39569 -5.32553 -0.95037
-0.49108 1.26009 1.58649 1.69218 1.78276 1.83548 2.11668 2.22934
2.71702 2.85236 2.90743 3.13179 3.22582 3.39801 3.53607 3.58507
3.63347 3.83509 3.99773 4.07353 4.16241 4.35058 4.42001 4.44555
4.47118 4.50400 4.57191 4.61072 4.69635 4.70824 4.87378 4.99084
5.04094 5.10007 5.18228 5.25232 5.34996 5.46398 5.48950 5.60042
6.37862 6.50982 7.03205 7.11593 8.02884 8.12916 9.12862
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.030706 B = 0.001735 C = 0.001686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.659608 B =16136.846662 C =16607.682460
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.975 5.975
2 C -0.106 4.106
3 Si 1.130 2.870
4 H -0.286 1.286
5 H -0.273 1.273
6 H -0.292 1.292
7 C -0.335 4.335
8 H 0.064 0.936
9 N -0.756 5.756
10 C 0.161 3.839
11 C -0.089 4.089
12 H 0.075 0.925
13 C -0.112 4.112
14 C -0.122 4.122
15 C 0.147 3.853
16 H 0.081 0.919
17 N -0.696 5.696
18 C 0.564 3.436
19 O -0.563 6.563
20 C -0.083 4.083
21 C -0.079 4.079
22 C 0.096 3.904
23 F -0.117 7.117
24 C 0.050 3.950
25 F -0.122 7.122
26 C 0.090 3.910
27 F -0.121 7.121
28 C -0.072 4.072
29 C -0.109 4.109
30 H 0.245 0.755
31 H 0.362 0.638
32 H 0.019 0.981
33 H 0.014 0.986
34 H 0.047 0.953
35 H 0.057 0.943
36 H 0.088 0.912
37 H 0.061 0.939
38 H 0.418 0.582
39 H 0.192 0.808
40 H 0.168 0.832
41 H 0.103 0.897
42 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.767 -30.614 -0.719 30.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.623 5.623
2 C -0.297 4.297
3 Si 0.955 3.045
4 H -0.213 1.213
5 H -0.198 1.198
6 H -0.218 1.218
7 C -0.466 4.466
8 H 0.082 0.918
9 N -0.401 5.401
10 C 0.034 3.966
11 C -0.108 4.108
12 H 0.093 0.907
13 C -0.150 4.150
14 C -0.161 4.161
15 C 0.042 3.958
16 H 0.099 0.901
17 N -0.348 5.348
18 C 0.350 3.650
19 O -0.442 6.442
20 C -0.086 4.086
21 C -0.098 4.098
22 C 0.076 3.924
23 F -0.095 7.095
24 C 0.028 3.972
25 F -0.100 7.100
26 C 0.070 3.930
27 F -0.100 7.100
28 C -0.092 4.092
29 C -0.148 4.148
30 H 0.055 0.945
31 H 0.194 0.806
32 H 0.037 0.963
33 H 0.032 0.968
34 H 0.066 0.934
35 H 0.075 0.925
36 H 0.107 0.893
37 H 0.080 0.920
38 H 0.257 0.743
39 H 0.209 0.791
40 H 0.186 0.814
41 H 0.121 0.879
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 2.107 -28.846 0.016 28.923
hybrid contribution -0.400 -2.172 -0.243 2.222
sum 1.707 -31.018 -0.226 31.066
Atomic orbital electron populations
1.70964 1.07093 1.27917 1.56358 1.27207 0.97193 1.04667 1.00663
0.82593 0.73567 0.71570 0.76812 1.21279 1.19840 1.21837 1.20426
0.92334 0.87340 1.46542 0.91799 1.42580 1.04877 1.02016 1.90592
1.20936 0.93837 0.84600 0.97179 1.21804 0.96901 0.93989 0.98106
0.90695 1.22247 0.99807 0.96371 0.96607 1.22802 0.97753 0.94160
1.01336 1.21757 0.97661 0.78713 0.97662 0.90055 1.45815 1.69174
1.05566 1.14239 1.18037 0.76894 0.85326 0.84707 1.90846 1.48482
1.82431 1.22433 1.19427 1.02771 0.92933 0.93505 1.21518 0.97042
0.94057 0.97195 1.17106 1.03480 0.92039 0.79819 1.91610 1.89293
1.91864 1.36732 1.18020 1.06836 0.78974 0.93333 1.91571 1.93285
1.31657 1.93486 1.17123 1.04504 0.86862 0.84519 1.91588 1.92309
1.63832 1.62256 1.21279 0.96909 0.88665 1.02332 1.22310 1.01222
0.93682 0.97560 0.94496 0.80630 0.96308 0.96842 0.93374 0.92458
0.89306 0.91987 0.74254 0.79055 0.81438 0.87884 0.90474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.98 -61.03 13.70 21.65 0.30 -60.74 16
2 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16
3 Si 1.13 52.14 29.92 68.60 2.05 54.19 16
4 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16
5 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16
7 C -0.33 -19.00 9.99 84.03 0.84 -18.17 16
8 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16
9 N -0.76 -37.92 5.45 -343.47 -1.87 -39.79 16
10 C 0.16 6.18 5.31 86.38 0.46 6.64 16
11 C -0.09 -2.45 2.96 -10.07 -0.03 -2.48 16
12 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
13 C -0.11 -3.15 6.08 31.67 0.19 -2.96 16
14 C -0.12 -2.55 6.58 31.89 0.21 -2.34 16
15 C 0.15 2.71 3.21 46.06 0.15 2.85 16
16 H 0.08 1.88 7.55 -2.39 -0.02 1.87 16
17 N -0.70 -8.53 5.11 -440.44 -2.25 -10.78 16
18 C 0.56 9.07 7.77 86.75 0.67 9.74 16
19 O -0.56 -14.05 15.99 -3.93 -0.06 -14.12 16
20 C -0.08 -0.91 5.87 -20.10 -0.12 -1.03 16
21 C -0.08 -0.52 9.51 22.57 0.21 -0.30 16
22 C 0.10 0.99 7.29 22.36 0.16 1.16 16
23 F -0.12 -1.42 17.17 44.97 0.77 -0.64 16
24 C 0.05 0.67 7.32 22.53 0.16 0.84 16
25 F -0.12 -2.03 17.08 44.97 0.77 -1.26 16
26 C 0.09 1.21 7.29 22.36 0.16 1.37 16
27 F -0.12 -1.94 17.17 44.97 0.77 -1.17 16
28 C -0.07 -0.89 9.57 22.57 0.22 -0.68 16
29 C -0.11 -2.00 6.19 31.32 0.19 -1.81 16
30 H 0.24 15.18 6.77 -92.71 -0.63 14.55 16
31 H 0.36 18.64 6.38 -92.71 -0.59 18.05 16
32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.01 0.54 8.00 -2.39 -0.02 0.53 16
34 H 0.05 1.59 7.76 -2.39 -0.02 1.57 16
35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
38 H 0.42 1.97 6.39 -92.71 -0.59 1.37 16
39 H 0.19 -0.08 6.40 -2.91 -0.02 -0.09 16
40 H 0.17 2.13 7.65 -2.91 -0.02 2.11 16
41 H 0.10 1.22 7.73 -2.39 -0.02 1.20 16
42 H 0.08 1.47 7.67 -2.38 -0.02 1.45 16
Total: -1.00 -73.76 364.23 4.49 -69.28
By element:
Atomic # 1 Polarization: 17.86 SS G_CDS: 0.05 Total: 17.91 kcal
Atomic # 6 Polarization: -16.84 SS G_CDS: 3.96 Total: -12.88 kcal
Atomic # 7 Polarization: -107.48 SS G_CDS: -3.83 Total: -111.30 kcal
Atomic # 8 Polarization: -14.05 SS G_CDS: -0.06 Total: -14.12 kcal
Atomic # 9 Polarization: -5.39 SS G_CDS: 2.31 Total: -3.07 kcal
Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.19 kcal
Total: -73.76 4.49 -69.28 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001332309590.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -90.757 kcal
(2) G-P(sol) polarization free energy of solvation -73.765 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal
(6) G-S(sol) free energy of system = (1) + (5) -160.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds