Wall clock time and date at job start Sat Apr 11 2020 06:32:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99473 * 2 1
4 4 H 1.48502 * 109.46944 * 179.97438 * 3 2 1
5 5 H 1.48492 * 109.47317 * 299.99820 * 3 2 1
6 6 H 1.48506 * 109.47025 * 59.99913 * 3 2 1
7 7 C 1.38809 * 120.00608 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00275 * 179.97438 * 7 2 1
9 9 N 1.36938 * 119.99568 * 0.02562 * 7 2 1
10 10 C 1.46501 * 119.99664 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.46916 * 179.97438 * 10 9 7
12 12 C 1.53005 * 109.46909 * 179.97438 * 11 10 9
13 13 H 1.08998 * 110.91838 * 302.55458 * 12 11 10
14 14 C 1.55452 * 111.11403 * 178.55543 * 12 11 10
15 15 C 1.54325 * 102.96638 * 206.46670 * 14 12 11
16 16 N 1.47024 * 107.27240 * 22.19453 * 15 14 12
17 17 C 1.34779 * 125.64612 * 181.03839 * 16 15 14
18 18 O 1.21583 * 119.99566 * 174.72127 * 17 16 15
19 19 C 1.47571 * 120.00088 * 354.71666 * 17 16 15
20 20 C 1.39742 * 120.13546 * 315.72096 * 19 17 16
21 21 C 1.37746 * 119.94314 * 179.97438 * 20 19 17
22 22 C 1.38711 * 120.21902 * 0.02562 * 21 20 19
23 23 F 1.35096 * 119.87152 * 179.97438 * 22 21 20
24 24 C 1.38667 * 120.26580 * 359.97438 * 22 21 20
25 25 F 1.35097 * 119.97455 * 180.02562 * 24 22 21
26 26 C 1.38387 * 120.04897 * 359.74274 * 24 22 21
27 27 F 1.35098 * 120.10597 * 180.27565 * 26 24 22
28 28 C 1.47422 * 108.70489 * 1.05964 * 16 15 14
29 29 H 0.96991 * 120.00601 * 0.02562 * 1 2 3
30 30 H 0.96991 * 120.00266 * 359.97438 * 9 7 2
31 31 H 1.09007 * 109.47235 * 59.99924 * 10 9 7
32 32 H 1.08998 * 109.47481 * 299.99936 * 10 9 7
33 33 H 1.08999 * 109.47293 * 60.00215 * 11 10 9
34 34 H 1.09002 * 109.47380 * 299.99891 * 11 10 9
35 35 H 1.09003 * 110.70530 * 88.09558 * 14 12 11
36 36 H 1.09001 * 110.86227 * 324.91206 * 14 12 11
37 37 H 1.09000 * 109.88453 * 262.77981 * 15 14 12
38 38 H 1.09003 * 110.01250 * 141.68823 * 15 14 12
39 39 H 1.07994 * 120.02368 * 359.95619 * 20 19 17
40 40 H 1.08002 * 119.89207 * 180.02562 * 21 20 19
41 41 H 1.08994 * 110.36814 * 94.70624 * 28 16 15
42 42 H 1.09002 * 110.36733 * 216.92432 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.7101 1.3466 0.0006
5 1 1.8913 2.3965 -1.2124
6 1 1.8912 2.3965 1.2125
7 6 2.0104 -1.2021 0.0005
8 1 3.0904 -1.2020 0.0001
9 7 1.3257 -2.3880 0.0005
10 6 2.0583 -3.6567 0.0005
11 6 1.0642 -4.8196 0.0012
12 6 1.8293 -6.1446 0.0005
13 1 2.4977 -6.2076 -0.8581
14 6 0.8540 -7.3545 0.0377
15 6 1.6997 -8.4608 0.7030
16 7 2.7666 -7.7957 1.4652
17 6 3.7298 -8.4171 2.1743
18 8 4.6200 -7.7683 2.6889
19 6 3.7037 -9.8847 2.3260
20 6 2.5050 -10.5380 2.6243
21 6 2.4851 -11.9082 2.7645
22 6 3.6518 -12.6427 2.6112
23 9 3.6244 -13.9861 2.7509
24 6 4.8463 -12.0035 2.3152
25 9 5.9789 -12.7246 2.1667
26 6 4.8777 -10.6280 2.1661
27 9 6.0397 -10.0047 1.8723
28 6 2.6082 -6.3367 1.3258
29 1 -0.4850 0.8399 -0.0004
30 1 0.3558 -2.3881 0.0005
31 1 2.6850 -3.7144 0.8906
32 1 2.6850 -3.7144 -0.8894
33 1 0.4372 -4.7622 -0.8886
34 1 0.4378 -4.7618 0.8914
35 1 0.5628 -7.6460 -0.9715
36 1 -0.0251 -7.1261 0.6404
37 1 2.1359 -9.1041 -0.0612
38 1 1.0779 -9.0526 1.3747
39 1 1.5950 -9.9691 2.7450
40 1 1.5581 -12.4123 2.9946
41 1 2.0371 -5.9354 2.1630
42 1 3.5833 -5.8531 1.2662
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001501611232.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:02
Heat of formation + Delta-G solvation = -125.154022 kcal
Electronic energy + Delta-G solvation = -28861.127338 eV
Core-core repulsion = 24199.212505 eV
Total energy + Delta-G solvation = -4661.914832 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 1.44 seconds
Orbital eigenvalues (eV)
-50.30338 -49.72330 -48.96722 -40.77515 -38.99229 -37.81832 -35.22535 -33.21205
-31.64569 -31.32240 -30.87436 -29.64043 -27.29509 -25.30064 -23.96024 -23.77515
-23.04378 -21.36645 -20.57240 -20.09904 -18.89375 -18.59346 -18.28357 -17.38094
-17.14731 -17.02361 -16.53888 -16.20200 -15.99079 -15.68603 -15.41704 -15.27079
-15.08631 -14.86363 -14.65879 -14.10472 -14.03358 -13.60246 -13.38721 -13.18123
-13.02504 -13.01038 -12.62334 -12.49677 -12.39914 -12.35353 -11.75424 -11.40538
-11.12804 -10.86135 -10.72021 -10.53942 -10.38738 -10.35822 -9.98015 -9.69093
-9.61130 -9.59651 -8.93639 -8.87430 -6.92204 -5.76817 -3.05348 -0.22289
0.06173 2.01194 2.35648 2.69390 2.77169 3.43972 3.48101 3.49998
3.52131 3.57092 3.69267 3.76722 4.01944 4.31670 4.40009 4.57892
4.65666 4.70329 4.88745 4.93290 4.98316 5.07249 5.17442 5.19230
5.29006 5.46513 5.54689 5.59759 5.68499 5.73882 5.81447 5.84493
5.95750 6.03410 6.18638 6.32055 6.33895 6.81543 6.85290 7.11172
7.70991 7.71618 8.42488 9.53654 10.11417 10.45736 11.46239
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.026086 B = 0.001931 C = 0.001838
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.106861 B =14496.380219 C =15227.093011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.016 4.016
3 Si 0.907 3.093
4 H -0.280 1.280
5 H -0.292 1.292
6 H -0.291 1.291
7 C -0.238 4.238
8 H 0.071 0.929
9 N -0.734 5.734
10 C 0.150 3.850
11 C -0.114 4.114
12 C -0.094 4.094
13 H 0.086 0.914
14 C -0.128 4.128
15 C 0.093 3.907
16 N -0.609 5.609
17 C 0.574 3.426
18 O -0.513 6.513
19 C -0.142 4.142
20 C -0.041 4.041
21 C -0.138 4.138
22 C 0.118 3.882
23 F -0.114 7.114
24 C 0.028 3.972
25 F -0.112 7.112
26 C 0.149 3.851
27 F -0.100 7.100
28 C 0.109 3.891
29 H 0.254 0.746
30 H 0.383 0.617
31 H 0.020 0.980
32 H 0.018 0.982
33 H 0.070 0.930
34 H 0.066 0.934
35 H 0.085 0.915
36 H 0.082 0.918
37 H 0.071 0.929
38 H 0.072 0.928
39 H 0.161 0.839
40 H 0.162 0.838
41 H 0.078 0.922
42 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.216 -30.637 3.665 30.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.212 4.212
3 Si 0.738 3.262
4 H -0.205 1.205
5 H -0.219 1.219
6 H -0.219 1.219
7 C -0.369 4.369
8 H 0.089 0.911
9 N -0.378 5.378
10 C 0.023 3.977
11 C -0.152 4.152
12 C -0.114 4.114
13 H 0.105 0.895
14 C -0.166 4.166
15 C -0.030 4.030
16 N -0.343 5.343
17 C 0.360 3.640
18 O -0.389 6.389
19 C -0.146 4.146
20 C -0.059 4.059
21 C -0.157 4.157
22 C 0.098 3.902
23 F -0.092 7.092
24 C 0.007 3.993
25 F -0.091 7.091
26 C 0.127 3.873
27 F -0.078 7.078
28 C -0.012 4.012
29 H 0.064 0.936
30 H 0.217 0.783
31 H 0.038 0.962
32 H 0.036 0.964
33 H 0.088 0.912
34 H 0.085 0.915
35 H 0.103 0.897
36 H 0.101 0.899
37 H 0.089 0.911
38 H 0.090 0.910
39 H 0.178 0.822
40 H 0.180 0.820
41 H 0.096 0.904
42 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 2.008 -30.250 3.977 30.577
hybrid contribution 0.597 0.552 -0.070 0.816
sum 2.606 -29.699 3.907 30.068
Atomic orbital electron populations
1.69663 1.05106 1.25530 1.58047 1.24748 0.95558 0.97744 1.03112
0.86112 0.78843 0.84064 0.77175 1.20521 1.21871 1.21851 1.19292
0.91106 0.84182 1.42318 0.91115 1.42367 1.05861 1.00097 1.89519
1.20690 0.93561 0.85581 0.97911 1.21681 0.98566 0.92351 1.02645
1.22407 0.96838 0.95015 0.97101 0.89522 1.22785 0.98079 0.94125
1.01623 1.22303 0.89091 0.96389 0.95181 1.48396 1.28337 1.08639
1.48950 1.17332 0.81469 0.85740 0.79421 1.90899 1.34356 1.66170
1.47444 1.19986 0.92762 0.94826 1.07028 1.21260 0.97052 0.93455
0.94182 1.21113 0.97634 0.93976 1.02975 1.17570 0.92755 0.78252
1.01649 1.91597 1.96954 1.27979 1.92712 1.17401 0.83478 0.88255
1.10208 1.91595 1.47376 1.76693 1.93404 1.17264 0.82651 0.87844
0.99546 1.91654 1.44694 1.81866 1.89579 1.22508 1.01979 0.78594
0.98130 0.93588 0.78333 0.96244 0.96410 0.91178 0.91496 0.89664
0.89925 0.91111 0.91028 0.82170 0.82000 0.90406 0.89607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16
2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16
3 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16
4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16
8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
9 N -0.73 -18.47 5.60 -59.91 -0.34 -18.81 16
10 C 0.15 2.90 6.11 -4.04 -0.02 2.87 16
11 C -0.11 -1.61 4.86 -26.73 -0.13 -1.74 16
12 C -0.09 -1.01 3.08 -88.30 -0.27 -1.28 16
13 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
14 C -0.13 -0.94 6.43 -24.73 -0.16 -1.10 16
15 C 0.09 0.61 5.91 -3.06 -0.02 0.60 16
16 N -0.61 -6.30 3.33 -171.73 -0.57 -6.87 16
17 C 0.57 6.98 7.22 -12.45 -0.09 6.89 16
18 O -0.51 -8.52 16.69 5.29 0.09 -8.43 16
19 C -0.14 -1.28 5.40 -104.92 -0.57 -1.84 16
20 C -0.04 -0.21 8.42 -39.20 -0.33 -0.54 16
21 C -0.14 -0.58 10.00 -39.59 -0.40 -0.97 16
22 C 0.12 0.80 7.31 -39.25 -0.29 0.51 16
23 F -0.11 -0.84 17.17 2.25 0.04 -0.81 16
24 C 0.03 0.25 7.30 -39.37 -0.29 -0.04 16
25 F -0.11 -1.15 17.09 2.25 0.04 -1.11 16
26 C 0.15 1.51 7.25 -38.92 -0.28 1.22 16
27 F -0.10 -1.28 16.29 2.25 0.04 -1.24 16
28 C 0.11 1.30 5.59 -2.53 -0.01 1.29 16
29 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16
30 H 0.38 10.02 7.67 -40.82 -0.31 9.71 16
31 H 0.02 0.39 7.45 -51.93 -0.39 0.00 16
32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16
35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16
37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.07 0.29 5.69 -51.93 -0.30 -0.01 16
39 H 0.16 0.46 6.10 -52.49 -0.32 0.14 16
40 H 0.16 0.19 8.06 -52.49 -0.42 -0.23 16
41 H 0.08 0.95 8.00 -51.93 -0.42 0.53 16
42 H 0.09 1.20 7.91 -51.93 -0.41 0.79 16
LS Contribution 364.34 15.07 5.49 5.49
Total: -1.00 -34.40 364.34 -7.68 -42.08
By element:
Atomic # 1 Polarization: 6.27 SS G_CDS: -5.06 Total: 1.21 kcal
Atomic # 6 Polarization: 1.56 SS G_CDS: -3.10 Total: -1.54 kcal
Atomic # 7 Polarization: -53.02 SS G_CDS: -0.18 Total: -53.20 kcal
Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal
Atomic # 9 Polarization: -3.27 SS G_CDS: 0.11 Total: -3.16 kcal
Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -34.40 -7.68 -42.08 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001501611232.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.072 kcal
(2) G-P(sol) polarization free energy of solvation -34.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.474 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds