Wall clock time and date at job start Sat Apr 11 2020 06:32:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86802 * 119.99473 * 2 1
4 4 H 1.48502 * 109.46944 * 179.97438 * 3 2 1
5 5 H 1.48492 * 109.47317 * 299.99820 * 3 2 1
6 6 H 1.48506 * 109.47025 * 59.99913 * 3 2 1
7 7 C 1.38809 * 120.00608 * 179.97438 * 2 1 3
8 8 H 1.08001 * 120.00275 * 179.97438 * 7 2 1
9 9 N 1.36938 * 119.99568 * 0.02562 * 7 2 1
10 10 C 1.46501 * 119.99664 * 179.97438 * 9 7 2
11 11 C 1.52998 * 109.46916 * 179.97438 * 10 9 7
12 12 C 1.53005 * 109.46909 * 179.97438 * 11 10 9
13 13 H 1.08998 * 110.91838 * 302.55458 * 12 11 10
14 14 C 1.55452 * 111.11403 * 178.55543 * 12 11 10
15 15 C 1.54325 * 102.96638 * 206.46670 * 14 12 11
16 16 N 1.47024 * 107.27240 * 22.19453 * 15 14 12
17 17 C 1.34779 * 125.64612 * 181.03839 * 16 15 14
18 18 O 1.21583 * 119.99566 * 174.72127 * 17 16 15
19 19 C 1.47571 * 120.00088 * 354.71666 * 17 16 15
20 20 C 1.39742 * 120.13546 * 315.72096 * 19 17 16
21 21 C 1.37746 * 119.94314 * 179.97438 * 20 19 17
22 22 C 1.38711 * 120.21902 * 0.02562 * 21 20 19
23 23 F 1.35096 * 119.87152 * 179.97438 * 22 21 20
24 24 C 1.38667 * 120.26580 * 359.97438 * 22 21 20
25 25 F 1.35097 * 119.97455 * 180.02562 * 24 22 21
26 26 C 1.38387 * 120.04897 * 359.74274 * 24 22 21
27 27 F 1.35098 * 120.10597 * 180.27565 * 26 24 22
28 28 C 1.47422 * 108.70489 * 1.05964 * 16 15 14
29 29 H 0.96991 * 120.00601 * 0.02562 * 1 2 3
30 30 H 0.96991 * 120.00266 * 359.97438 * 9 7 2
31 31 H 1.09007 * 109.47235 * 59.99924 * 10 9 7
32 32 H 1.08998 * 109.47481 * 299.99936 * 10 9 7
33 33 H 1.08999 * 109.47293 * 60.00215 * 11 10 9
34 34 H 1.09002 * 109.47380 * 299.99891 * 11 10 9
35 35 H 1.09003 * 110.70530 * 88.09558 * 14 12 11
36 36 H 1.09001 * 110.86227 * 324.91206 * 14 12 11
37 37 H 1.09000 * 109.88453 * 262.77981 * 15 14 12
38 38 H 1.09003 * 110.01250 * 141.68823 * 15 14 12
39 39 H 1.07994 * 120.02368 * 359.95619 * 20 19 17
40 40 H 1.08002 * 119.89207 * 180.02562 * 21 20 19
41 41 H 1.08994 * 110.36814 * 94.70624 * 28 16 15
42 42 H 1.09002 * 110.36733 * 216.92432 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2500 1.6178 0.0000
4 1 3.7101 1.3466 0.0006
5 1 1.8913 2.3965 -1.2124
6 1 1.8912 2.3965 1.2125
7 6 2.0104 -1.2021 0.0005
8 1 3.0904 -1.2020 0.0001
9 7 1.3257 -2.3880 0.0005
10 6 2.0583 -3.6567 0.0005
11 6 1.0642 -4.8196 0.0012
12 6 1.8293 -6.1446 0.0005
13 1 2.4977 -6.2076 -0.8581
14 6 0.8540 -7.3545 0.0377
15 6 1.6997 -8.4608 0.7030
16 7 2.7666 -7.7957 1.4652
17 6 3.7298 -8.4171 2.1743
18 8 4.6200 -7.7683 2.6889
19 6 3.7037 -9.8847 2.3260
20 6 2.5050 -10.5380 2.6243
21 6 2.4851 -11.9082 2.7645
22 6 3.6518 -12.6427 2.6112
23 9 3.6244 -13.9861 2.7509
24 6 4.8463 -12.0035 2.3152
25 9 5.9789 -12.7246 2.1667
26 6 4.8777 -10.6280 2.1661
27 9 6.0397 -10.0047 1.8723
28 6 2.6082 -6.3367 1.3258
29 1 -0.4850 0.8399 -0.0004
30 1 0.3558 -2.3881 0.0005
31 1 2.6850 -3.7144 0.8906
32 1 2.6850 -3.7144 -0.8894
33 1 0.4372 -4.7622 -0.8886
34 1 0.4378 -4.7618 0.8914
35 1 0.5628 -7.6460 -0.9715
36 1 -0.0251 -7.1261 0.6404
37 1 2.1359 -9.1041 -0.0612
38 1 1.0779 -9.0526 1.3747
39 1 1.5950 -9.9691 2.7450
40 1 1.5581 -12.4123 2.9946
41 1 2.0371 -5.9354 2.1630
42 1 3.5833 -5.8531 1.2662
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001501611232.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:01
Heat of formation + Delta-G solvation = -147.218467 kcal
Electronic energy + Delta-G solvation = -28862.084124 eV
Core-core repulsion = 24199.212505 eV
Total energy + Delta-G solvation = -4662.871619 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-50.98621 -50.40695 -49.67298 -41.57712 -39.66254 -38.75813 -36.86598 -34.63861
-32.96178 -31.89076 -31.84757 -30.71520 -28.55128 -26.40883 -25.20861 -24.43197
-24.10284 -22.70390 -21.38764 -21.03389 -19.53191 -19.28357 -19.12494 -18.98446
-18.07586 -17.79074 -17.40561 -16.91518 -16.72033 -16.64043 -16.47650 -16.15912
-16.09899 -15.74021 -15.59459 -15.36479 -15.20465 -14.98163 -14.65179 -14.23506
-14.00597 -13.89386 -13.37870 -13.31655 -13.10082 -13.08860 -12.96959 -12.93559
-12.82925 -12.26319 -12.13718 -12.00284 -11.69844 -11.50619 -11.40099 -11.31983
-10.94246 -10.21764 -10.19683 -9.75821 -9.00647 -7.97279 -5.25655 -0.81056
-0.49354 1.26241 1.46266 1.46755 1.57057 1.61541 2.03181 2.14951
2.54562 2.90412 2.93844 3.04606 3.29594 3.36224 3.43725 3.62678
3.63318 3.81895 4.12428 4.18574 4.28422 4.30033 4.35828 4.50949
4.51953 4.59270 4.59956 4.71790 4.74375 4.78698 4.87275 4.93060
4.99874 5.11583 5.19770 5.30940 5.33850 5.39975 5.47970 5.50651
6.26551 6.29965 6.83187 7.32561 8.09063 8.32603 9.26255
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.026086 B = 0.001931 C = 0.001838
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.106861 B =14496.380219 C =15227.093011
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.967 5.967
2 C -0.075 4.075
3 Si 0.972 3.028
4 H -0.270 1.270
5 H -0.290 1.290
6 H -0.291 1.291
7 C -0.247 4.247
8 H 0.070 0.930
9 N -0.747 5.747
10 C 0.146 3.854
11 C -0.098 4.098
12 C -0.087 4.087
13 H 0.084 0.916
14 C -0.117 4.117
15 C 0.086 3.914
16 N -0.605 5.605
17 C 0.568 3.432
18 O -0.575 6.575
19 C -0.149 4.149
20 C -0.020 4.020
21 C -0.105 4.105
22 C 0.123 3.877
23 F -0.116 7.116
24 C 0.013 3.987
25 F -0.128 7.128
26 C 0.121 3.879
27 F -0.128 7.128
28 C 0.107 3.893
29 H 0.252 0.748
30 H 0.376 0.624
31 H 0.013 0.987
32 H 0.014 0.986
33 H 0.075 0.925
34 H 0.069 0.931
35 H 0.106 0.894
36 H 0.094 0.906
37 H 0.086 0.914
38 H 0.112 0.888
39 H 0.195 0.805
40 H 0.209 0.791
41 H 0.074 0.926
42 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.247 -32.965 3.639 33.188
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.617 5.617
2 C -0.267 4.267
3 Si 0.801 3.199
4 H -0.195 1.195
5 H -0.217 1.217
6 H -0.218 1.218
7 C -0.379 4.379
8 H 0.088 0.912
9 N -0.390 5.390
10 C 0.020 3.980
11 C -0.137 4.137
12 C -0.107 4.107
13 H 0.102 0.898
14 C -0.155 4.155
15 C -0.034 4.034
16 N -0.336 5.336
17 C 0.357 3.643
18 O -0.455 6.455
19 C -0.154 4.154
20 C -0.038 4.038
21 C -0.123 4.123
22 C 0.102 3.898
23 F -0.094 7.094
24 C -0.008 4.008
25 F -0.106 7.106
26 C 0.099 3.901
27 F -0.106 7.106
28 C -0.015 4.015
29 H 0.061 0.939
30 H 0.208 0.792
31 H 0.031 0.969
32 H 0.032 0.968
33 H 0.093 0.907
34 H 0.087 0.913
35 H 0.125 0.875
36 H 0.113 0.887
37 H 0.104 0.896
38 H 0.130 0.870
39 H 0.212 0.788
40 H 0.226 0.774
41 H 0.092 0.908
42 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -0.464 -32.630 3.924 32.869
hybrid contribution 1.347 1.210 -0.057 1.811
sum 0.882 -31.420 3.867 31.670
Atomic orbital electron populations
1.69796 1.06409 1.26084 1.59449 1.25551 0.96498 1.01016 1.03670
0.85099 0.78075 0.79878 0.76869 1.19490 1.21686 1.21824 1.19646
0.91370 0.85653 1.41265 0.91203 1.42586 1.05746 1.01259 1.89382
1.20888 0.94567 0.85451 0.97130 1.21513 0.97424 0.91778 1.02950
1.22266 0.97419 0.94959 0.96084 0.89792 1.22800 0.97381 0.91953
1.03359 1.22668 0.88318 0.96390 0.96036 1.48458 1.28738 1.08071
1.48378 1.17842 0.80799 0.86988 0.78691 1.90862 1.36763 1.67730
1.50103 1.19840 0.93951 0.92811 1.08761 1.21623 0.96363 0.93938
0.91897 1.21564 0.97984 0.93186 0.99614 1.17769 0.92677 0.78227
1.01126 1.91600 1.96930 1.28247 1.92663 1.17595 0.83974 0.87835
1.11415 1.91546 1.48505 1.76889 1.93708 1.17561 0.82338 0.88536
1.01635 1.91572 1.46361 1.82474 1.90232 1.22377 1.00365 0.79907
0.98864 0.93870 0.79182 0.96915 0.96798 0.90686 0.91254 0.87511
0.88720 0.89582 0.87041 0.78797 0.77436 0.90752 0.92943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16
2 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16
3 Si 0.97 46.79 29.55 68.60 2.03 48.82 16
4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16
5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
6 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16
7 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16
8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16
9 N -0.75 -38.13 5.60 -343.45 -1.92 -40.05 16
10 C 0.15 5.72 6.11 86.38 0.53 6.25 16
11 C -0.10 -2.68 4.86 30.60 0.15 -2.53 16
12 C -0.09 -1.75 3.08 -9.29 -0.03 -1.78 16
13 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
14 C -0.12 -1.23 6.43 31.89 0.21 -1.03 16
15 C 0.09 0.77 5.91 86.73 0.51 1.29 16
16 N -0.60 -11.66 3.33 -815.49 -2.71 -14.37 16
17 C 0.57 13.84 7.22 86.71 0.63 14.46 16
18 O -0.57 -20.38 16.69 -3.98 -0.07 -20.45 16
19 C -0.15 -2.49 5.40 -20.06 -0.11 -2.60 16
20 C -0.02 -0.12 8.42 22.52 0.19 0.07 16
21 C -0.11 -0.33 10.00 22.27 0.22 -0.11 16
22 C 0.12 1.31 7.31 22.49 0.16 1.47 16
23 F -0.12 -1.40 17.17 44.97 0.77 -0.63 16
24 C 0.01 0.23 7.30 22.41 0.16 0.39 16
25 F -0.13 -2.73 17.09 44.97 0.77 -1.96 16
26 C 0.12 2.50 7.25 22.70 0.16 2.67 16
27 F -0.13 -3.60 16.29 44.97 0.73 -2.86 16
28 C 0.11 2.56 5.59 86.86 0.49 3.04 16
29 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16
30 H 0.38 19.95 7.67 -92.72 -0.71 19.24 16
31 H 0.01 0.52 7.45 -2.38 -0.02 0.51 16
32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16
33 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16
34 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16
35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16
36 H 0.09 0.84 8.05 -2.39 -0.02 0.83 16
37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
38 H 0.11 0.16 5.69 -2.39 -0.01 0.15 16
39 H 0.20 -0.17 6.10 -2.91 -0.02 -0.19 16
40 H 0.21 -1.09 8.06 -2.91 -0.02 -1.12 16
41 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16
42 H 0.05 1.58 7.91 -2.39 -0.02 1.56 16
Total: -1.00 -80.57 364.34 4.83 -75.74
By element:
Atomic # 1 Polarization: 9.76 SS G_CDS: 0.37 Total: 10.13 kcal
Atomic # 6 Polarization: -0.16 SS G_CDS: 4.58 Total: 4.42 kcal
Atomic # 7 Polarization: -108.84 SS G_CDS: -4.35 Total: -113.20 kcal
Atomic # 8 Polarization: -20.38 SS G_CDS: -0.07 Total: -20.45 kcal
Atomic # 9 Polarization: -7.73 SS G_CDS: 2.27 Total: -5.45 kcal
Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal
Total: -80.57 4.83 -75.74 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001501611232.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.482 kcal
(2) G-P(sol) polarization free energy of solvation -80.566 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds