Wall clock time and date at job start Sat Apr 11 2020 06:32:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30827 * 1
3 3 Si 1.86793 * 119.99933 * 2 1
4 4 H 1.48500 * 109.47506 * 239.99953 * 3 2 1
5 5 H 1.48500 * 109.47528 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47069 * 120.00189 * 3 2 1
7 7 C 1.39933 * 119.99923 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00106 * 192.53663 * 7 2 1
9 9 C 1.41437 * 119.99907 * 12.53632 * 7 2 1
10 10 C 1.40786 * 120.17775 * 207.22271 * 9 7 2
11 11 C 1.37710 * 120.04250 * 179.97438 * 10 9 7
12 12 C 1.38373 * 120.40851 * 359.79308 * 11 10 9
13 13 C 1.39874 * 120.36243 * 0.46962 * 12 11 10
14 14 C 1.47885 * 120.02807 * 179.78597 * 13 12 11
15 15 O 1.21549 * 119.99901 * 151.98463 * 14 13 12
16 16 N 1.34772 * 120.00276 * 331.98820 * 14 13 12
17 17 C 1.46930 * 120.62773 * 353.55543 * 16 14 13
18 18 C 1.53188 * 108.77664 * 233.33432 * 17 16 14
19 19 C 1.53045 * 109.30934 * 305.36602 * 18 17 16
20 20 H 1.09001 * 109.46070 * 301.34046 * 19 18 17
21 21 C 1.53006 * 109.45896 * 181.37284 * 19 18 17
22 22 F 1.39896 * 109.47288 * 54.23008 * 21 19 18
23 23 F 1.39897 * 109.46961 * 174.23375 * 21 19 18
24 24 F 1.39898 * 109.46834 * 294.23061 * 21 19 18
25 25 C 1.53039 * 109.53994 * 61.36399 * 19 18 17
26 26 H 1.09001 * 109.49522 * 58.58369 * 25 19 18
27 27 N 1.46900 * 109.49901 * 178.64887 * 25 19 18
28 28 C 1.46921 * 120.63096 * 173.27295 * 16 14 13
29 29 C 1.39034 * 119.94705 * 359.50819 * 13 12 11
30 30 H 0.97001 * 120.00427 * 0.02562 * 1 2 3
31 31 H 1.08006 * 119.98033 * 0.02771 * 10 9 7
32 32 H 1.08002 * 119.79609 * 180.02562 * 11 10 9
33 33 H 1.08005 * 119.82097 * 180.23029 * 12 11 10
34 34 H 1.09007 * 109.58609 * 353.12071 * 17 16 14
35 35 H 1.09004 * 109.58892 * 113.54482 * 17 16 14
36 36 H 1.08995 * 109.49999 * 65.31318 * 18 17 16
37 37 H 1.08994 * 109.49947 * 185.41272 * 18 17 16
38 38 H 1.00900 * 111.00072 * 173.47669 * 27 25 19
39 39 H 1.00898 * 111.00124 * 297.43542 * 27 25 19
40 40 H 1.09001 * 109.58813 * 246.44912 * 28 16 14
41 41 H 1.08996 * 109.58880 * 6.87839 * 28 16 14
42 42 H 1.07994 * 120.20333 * 180.27632 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.0960 1.6964 -1.2125
5 1 1.2773 2.7465 0.0006
6 1 3.0960 1.6963 1.2125
7 6 2.0079 -1.2119 -0.0005
8 1 3.0686 -1.2231 0.2025
9 6 1.3260 -2.4220 -0.2670
10 6 1.8062 -3.6358 0.2604
11 6 1.1397 -4.8124 -0.0003
12 6 -0.0058 -4.8113 -0.7765
13 6 -0.4949 -3.6159 -1.3135
14 6 -1.7172 -3.6239 -2.1458
15 8 -2.4267 -2.6381 -2.1932
16 7 -2.0445 -4.7242 -2.8519
17 6 -1.1286 -5.8712 -2.9178
18 6 -0.8820 -6.2213 -4.3887
19 6 -2.2249 -6.4483 -5.0869
20 1 -2.7636 -7.2523 -4.5854
21 6 -1.9813 -6.8317 -6.5479
22 9 -1.1154 -7.9290 -6.6040
23 9 -3.1983 -7.1667 -7.1512
24 9 -1.4077 -5.7499 -7.2245
25 6 -3.0555 -5.1642 -5.0287
26 1 -2.5065 -4.3538 -5.5082
27 7 -4.3308 -5.3731 -5.7272
28 6 -3.3267 -4.8021 -3.5651
29 6 0.1659 -2.4193 -1.0593
30 1 -0.4851 0.8400 -0.0004
31 1 2.6973 -3.6442 0.8705
32 1 1.5114 -5.7412 0.4066
33 1 -0.5231 -5.7390 -0.9719
34 1 -0.1835 -5.6121 -2.4405
35 1 -1.5753 -6.7254 -2.4088
36 1 -0.3536 -5.4010 -4.8743
37 1 -0.2816 -7.1289 -4.4509
38 1 -4.9406 -4.5774 -5.6123
39 1 -4.1793 -5.5745 -6.7041
40 1 -3.9526 -5.5690 -3.1089
41 1 -3.8319 -3.8376 -3.5148
42 1 -0.2106 -1.4933 -1.4682
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001580055754.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:51
Heat of formation + Delta-G solvation = -152.599548 kcal
Electronic energy + Delta-G solvation = -30645.292303 eV
Core-core repulsion = 25982.187343 eV
Total energy + Delta-G solvation = -4663.104960 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-50.35835 -47.83682 -47.78489 -40.18196 -37.95707 -36.93148 -34.64768 -33.65553
-32.69046 -30.55826 -29.53571 -28.78970 -27.20362 -25.44008 -23.99101 -22.97344
-22.08967 -21.04038 -20.53591 -19.15646 -18.59459 -18.47382 -17.86374 -17.40532
-16.21525 -15.93795 -15.69277 -15.40910 -15.14622 -14.92863 -14.80499 -14.68023
-14.44467 -14.15905 -13.97988 -13.90580 -13.75244 -13.50344 -13.14962 -13.03967
-12.99866 -12.72881 -12.53765 -12.33005 -11.98169 -11.70034 -11.51696 -11.36346
-11.16241 -10.91204 -10.88407 -10.74120 -10.32674 -10.10660 -9.73399 -9.29585
-9.06685 -9.03085 -8.47291 -7.68200 -7.52454 -6.79846 -4.48239 2.16396
2.53815 2.75225 3.04601 3.06163 3.10119 3.19211 3.51601 3.69178
3.73332 3.77116 3.88481 4.24663 4.44487 4.55046 4.74212 4.79313
4.94598 5.06964 5.18184 5.34198 5.43248 5.49441 5.54720 5.73723
5.86617 5.89889 5.98327 6.06135 6.22820 6.58446 6.68037 6.82663
6.93029 6.96227 7.10242 7.16064 7.31713 7.56736 7.68157 7.79781
7.92690 8.10925 8.44254 8.73598 8.76365 8.79515 10.13185
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.017377 B = 0.002936 C = 0.002824
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1610.915195 B = 9536.018272 C = 9913.367100
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.786 5.786
2 C 0.071 3.929
3 Si 0.913 3.087
4 H -0.263 1.263
5 H -0.277 1.277
6 H -0.265 1.265
7 C -0.460 4.460
8 H 0.080 0.920
9 C 0.101 3.899
10 C -0.209 4.209
11 C -0.098 4.098
12 C -0.233 4.233
13 C -0.125 4.125
14 C 0.569 3.431
15 O -0.539 6.539
16 N -0.618 5.618
17 C 0.088 3.912
18 C -0.137 4.137
19 C -0.124 4.124
20 H 0.122 0.878
21 C 0.451 3.549
22 F -0.182 7.182
23 F -0.176 7.176
24 F -0.184 7.184
25 C 0.080 3.920
26 H 0.055 0.945
27 N -0.848 5.848
28 C 0.124 3.876
29 C -0.092 4.092
30 H 0.285 0.715
31 H 0.096 0.904
32 H 0.094 0.906
33 H 0.108 0.892
34 H 0.137 0.863
35 H 0.069 0.931
36 H 0.081 0.919
37 H 0.091 0.909
38 H 0.349 0.651
39 H 0.347 0.653
40 H 0.075 0.925
41 H 0.096 0.904
42 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.378 -11.853 -10.467 16.408
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.411 5.411
2 C -0.148 4.148
3 Si 0.737 3.263
4 H -0.188 1.188
5 H -0.202 1.202
6 H -0.190 1.190
7 C -0.489 4.489
8 H 0.099 0.901
9 C 0.098 3.902
10 C -0.229 4.229
11 C -0.116 4.116
12 C -0.252 4.252
13 C -0.129 4.129
14 C 0.361 3.639
15 O -0.416 6.416
16 N -0.353 5.353
17 C -0.034 4.034
18 C -0.176 4.176
19 C -0.144 4.144
20 H 0.141 0.859
21 C 0.397 3.603
22 F -0.164 7.164
23 F -0.157 7.157
24 F -0.166 7.166
25 C -0.033 4.033
26 H 0.073 0.927
27 N -0.383 5.383
28 C 0.000 4.000
29 C -0.112 4.112
30 H 0.096 0.904
31 H 0.114 0.886
32 H 0.113 0.887
33 H 0.126 0.874
34 H 0.155 0.845
35 H 0.087 0.913
36 H 0.100 0.900
37 H 0.110 0.890
38 H 0.163 0.837
39 H 0.164 0.836
40 H 0.093 0.907
41 H 0.115 0.885
42 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -5.072 -11.746 -10.027 16.255
hybrid contribution 0.545 1.331 -0.879 1.685
sum -4.527 -10.415 -10.906 15.745
Atomic orbital electron populations
1.69763 1.07396 1.29801 1.34124 1.25965 0.94866 1.01498 0.92455
0.86290 0.79999 0.80077 0.79946 1.18791 1.20219 1.18951 1.19575
0.96485 0.90486 1.42352 0.90147 1.17595 0.91349 0.92505 0.88724
1.21153 1.02944 0.93148 1.05633 1.20480 0.95883 0.96745 0.98491
1.20751 1.00629 0.95682 1.08161 1.19404 0.95668 0.95571 1.02228
1.18991 0.85702 0.80933 0.78258 1.90712 1.53099 1.33029 1.64736
1.47940 1.18711 1.17190 1.51418 1.22636 0.97655 0.88602 0.94539
1.22139 0.94126 1.03857 0.97470 1.22622 1.00505 1.01906 0.89379
0.85948 1.20743 0.73806 0.74587 0.91132 1.93172 1.70745 1.55410
1.97062 1.93090 1.44457 1.92223 1.85945 1.93182 1.85143 1.55389
1.82838 1.21655 0.90418 0.94220 0.96969 0.92682 1.58819 1.14026
1.46761 1.18743 1.21364 0.86314 1.03574 0.88748 1.21626 0.96406
0.95575 0.97626 0.90372 0.88581 0.88744 0.87401 0.84532 0.91327
0.90040 0.89004 0.83712 0.83634 0.90661 0.88520 0.84986
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.53 10.83 55.55 0.60 -19.93 16
2 C 0.07 1.75 5.23 -17.35 -0.09 1.66 16
3 Si 0.91 18.42 29.58 -169.99 -5.03 13.39 16
4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16
5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16
6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16
7 C -0.46 -11.74 9.06 -37.73 -0.34 -12.08 16
8 H 0.08 1.94 7.88 -52.48 -0.41 1.53 16
9 C 0.10 2.57 5.56 -106.87 -0.59 1.97 16
10 C -0.21 -4.73 9.78 -38.81 -0.38 -5.11 16
11 C -0.10 -1.95 10.01 -39.72 -0.40 -2.34 16
12 C -0.23 -4.54 7.43 -38.92 -0.29 -4.82 16
13 C -0.13 -2.81 5.49 -105.04 -0.58 -3.38 16
14 C 0.57 11.89 7.46 -12.31 -0.09 11.80 16
15 O -0.54 -13.06 16.08 5.32 0.09 -12.98 16
16 N -0.62 -9.68 2.97 -173.87 -0.52 -10.20 16
17 C 0.09 1.10 4.67 -3.71 -0.02 1.09 16
18 C -0.14 -1.46 5.11 -26.61 -0.14 -1.59 16
19 C -0.12 -1.26 1.93 -90.57 -0.18 -1.43 16
20 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16
21 C 0.45 4.73 2.56 37.16 0.10 4.82 16
22 F -0.18 -1.96 16.55 2.25 0.04 -1.92 16
23 F -0.18 -1.82 14.46 2.25 0.03 -1.79 16
24 F -0.18 -2.14 16.34 2.25 0.04 -2.10 16
25 C 0.08 0.90 2.72 -67.59 -0.18 0.71 16
26 H 0.06 0.70 7.72 -51.93 -0.40 0.30 16
27 N -0.85 -8.12 8.85 -4.56 -0.04 -8.16 16
28 C 0.12 1.64 5.96 -3.71 -0.02 1.62 16
29 C -0.09 -2.36 8.21 -38.44 -0.32 -2.67 16
30 H 0.29 6.89 8.30 -40.82 -0.34 6.55 16
31 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16
32 H 0.09 1.58 8.06 -52.49 -0.42 1.15 16
33 H 0.11 1.74 5.24 -52.48 -0.27 1.46 16
34 H 0.14 1.94 4.08 -51.92 -0.21 1.73 16
35 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16
36 H 0.08 0.97 7.99 -51.93 -0.42 0.56 16
37 H 0.09 0.81 7.63 -51.93 -0.40 0.41 16
38 H 0.35 2.97 8.96 -39.29 -0.35 2.62 16
39 H 0.35 3.20 6.31 -39.29 -0.25 2.95 16
40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16
41 H 0.10 1.44 7.00 -51.93 -0.36 1.08 16
42 H 0.13 3.69 5.98 -52.49 -0.31 3.37 16
LS Contribution 345.64 15.07 5.21 5.21
Total: -1.00 -28.50 345.64 -7.73 -36.23
By element:
Atomic # 1 Polarization: 16.65 SS G_CDS: -4.63 Total: 12.02 kcal
Atomic # 6 Polarization: -6.25 SS G_CDS: -3.52 Total: -9.77 kcal
Atomic # 7 Polarization: -38.33 SS G_CDS: 0.04 Total: -38.29 kcal
Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal
Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.81 kcal
Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -28.50 -7.73 -36.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001580055754.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -116.371 kcal
(2) G-P(sol) polarization free energy of solvation -28.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.871 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.600 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds