Wall clock time and date at job start Sat Apr 11 2020 06:32:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30827 * 1
3 3 Si 1.86793 * 119.99933 * 2 1
4 4 H 1.48500 * 109.47506 * 239.99953 * 3 2 1
5 5 H 1.48500 * 109.47528 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47069 * 120.00189 * 3 2 1
7 7 C 1.39933 * 119.99923 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00106 * 192.53663 * 7 2 1
9 9 C 1.41437 * 119.99907 * 12.53632 * 7 2 1
10 10 C 1.40786 * 120.17775 * 207.22271 * 9 7 2
11 11 C 1.37710 * 120.04250 * 179.97438 * 10 9 7
12 12 C 1.38373 * 120.40851 * 359.79308 * 11 10 9
13 13 C 1.39874 * 120.36243 * 0.46962 * 12 11 10
14 14 C 1.47885 * 120.02807 * 179.78597 * 13 12 11
15 15 O 1.21549 * 119.99901 * 151.98463 * 14 13 12
16 16 N 1.34772 * 120.00276 * 331.98820 * 14 13 12
17 17 C 1.46930 * 120.62773 * 353.55543 * 16 14 13
18 18 C 1.53188 * 108.77664 * 233.33432 * 17 16 14
19 19 C 1.53045 * 109.30934 * 305.36602 * 18 17 16
20 20 H 1.09001 * 109.46070 * 301.34046 * 19 18 17
21 21 C 1.53006 * 109.45896 * 181.37284 * 19 18 17
22 22 F 1.39896 * 109.47288 * 54.23008 * 21 19 18
23 23 F 1.39897 * 109.46961 * 174.23375 * 21 19 18
24 24 F 1.39898 * 109.46834 * 294.23061 * 21 19 18
25 25 C 1.53039 * 109.53994 * 61.36399 * 19 18 17
26 26 H 1.09001 * 109.49522 * 58.58369 * 25 19 18
27 27 N 1.46900 * 109.49901 * 178.64887 * 25 19 18
28 28 C 1.46921 * 120.63096 * 173.27295 * 16 14 13
29 29 C 1.39034 * 119.94705 * 359.50819 * 13 12 11
30 30 H 0.97001 * 120.00427 * 0.02562 * 1 2 3
31 31 H 1.08006 * 119.98033 * 0.02771 * 10 9 7
32 32 H 1.08002 * 119.79609 * 180.02562 * 11 10 9
33 33 H 1.08005 * 119.82097 * 180.23029 * 12 11 10
34 34 H 1.09007 * 109.58609 * 353.12071 * 17 16 14
35 35 H 1.09004 * 109.58892 * 113.54482 * 17 16 14
36 36 H 1.08995 * 109.49999 * 65.31318 * 18 17 16
37 37 H 1.08994 * 109.49947 * 185.41272 * 18 17 16
38 38 H 1.00900 * 111.00072 * 173.47669 * 27 25 19
39 39 H 1.00898 * 111.00124 * 297.43542 * 27 25 19
40 40 H 1.09001 * 109.58813 * 246.44912 * 28 16 14
41 41 H 1.08996 * 109.58880 * 6.87839 * 28 16 14
42 42 H 1.07994 * 120.20333 * 180.27632 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.0960 1.6964 -1.2125
5 1 1.2773 2.7465 0.0006
6 1 3.0960 1.6963 1.2125
7 6 2.0079 -1.2119 -0.0005
8 1 3.0686 -1.2231 0.2025
9 6 1.3260 -2.4220 -0.2670
10 6 1.8062 -3.6358 0.2604
11 6 1.1397 -4.8124 -0.0003
12 6 -0.0058 -4.8113 -0.7765
13 6 -0.4949 -3.6159 -1.3135
14 6 -1.7172 -3.6239 -2.1458
15 8 -2.4267 -2.6381 -2.1932
16 7 -2.0445 -4.7242 -2.8519
17 6 -1.1286 -5.8712 -2.9178
18 6 -0.8820 -6.2213 -4.3887
19 6 -2.2249 -6.4483 -5.0869
20 1 -2.7636 -7.2523 -4.5854
21 6 -1.9813 -6.8317 -6.5479
22 9 -1.1154 -7.9290 -6.6040
23 9 -3.1983 -7.1667 -7.1512
24 9 -1.4077 -5.7499 -7.2245
25 6 -3.0555 -5.1642 -5.0287
26 1 -2.5065 -4.3538 -5.5082
27 7 -4.3308 -5.3731 -5.7272
28 6 -3.3267 -4.8021 -3.5651
29 6 0.1659 -2.4193 -1.0593
30 1 -0.4851 0.8400 -0.0004
31 1 2.6973 -3.6442 0.8705
32 1 1.5114 -5.7412 0.4066
33 1 -0.5231 -5.7390 -0.9719
34 1 -0.1835 -5.6121 -2.4405
35 1 -1.5753 -6.7254 -2.4088
36 1 -0.3536 -5.4010 -4.8743
37 1 -0.2816 -7.1289 -4.4509
38 1 -4.9406 -4.5774 -5.6123
39 1 -4.1793 -5.5745 -6.7041
40 1 -3.9526 -5.5690 -3.1089
41 1 -3.8319 -3.8376 -3.5148
42 1 -0.2106 -1.4933 -1.4682
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001580055754.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:50
Heat of formation + Delta-G solvation = -170.382466 kcal
Electronic energy + Delta-G solvation = -30646.063428 eV
Core-core repulsion = 25982.187343 eV
Total energy + Delta-G solvation = -4663.876085 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-51.19750 -48.66013 -48.64490 -41.55666 -39.33942 -38.55640 -35.98648 -35.26398
-33.70053 -32.19019 -31.28645 -29.84486 -28.36912 -27.20633 -25.14487 -24.02584
-23.46408 -22.72719 -21.64887 -20.51542 -19.52798 -19.42208 -19.26263 -18.53078
-17.53087 -17.46926 -16.93888 -16.66459 -16.51439 -16.29049 -15.94287 -15.73208
-15.36811 -15.26103 -15.01929 -15.00079 -14.75963 -14.67874 -14.59806 -14.39075
-14.16953 -14.03888 -14.00132 -13.52977 -13.47141 -12.99077 -12.85180 -12.79860
-12.51041 -12.37061 -12.25635 -11.96037 -11.85603 -11.79113 -11.41578 -11.08414
-10.67663 -9.92506 -9.79105 -9.39989 -9.30063 -8.60738 -6.38743 0.43233
1.01692 1.36281 1.47504 1.49399 1.69518 1.87017 2.04949 2.19540
2.69902 2.77617 2.86411 2.93259 3.39097 3.50046 3.66881 3.82296
3.82840 3.91610 3.99787 4.15148 4.29434 4.48354 4.51988 4.60953
4.64332 4.69557 4.78644 4.85020 4.94603 5.07865 5.10435 5.21907
5.32108 5.49291 5.55727 5.84796 5.92614 5.95434 6.06563 6.27955
6.33966 6.35633 6.62570 6.89799 6.96022 7.19689 8.33739
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.017377 B = 0.002936 C = 0.002824
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1610.915195 B = 9536.018272 C = 9913.367100
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.832 5.832
2 C 0.027 3.973
3 Si 0.983 3.017
4 H -0.259 1.259
5 H -0.274 1.274
6 H -0.254 1.254
7 C -0.499 4.499
8 H 0.083 0.917
9 C 0.068 3.932
10 C -0.213 4.213
11 C -0.095 4.095
12 C -0.203 4.203
13 C -0.136 4.136
14 C 0.562 3.438
15 O -0.587 6.587
16 N -0.605 5.605
17 C 0.081 3.919
18 C -0.132 4.132
19 C -0.118 4.118
20 H 0.146 0.854
21 C 0.455 3.545
22 F -0.181 7.181
23 F -0.174 7.174
24 F -0.194 7.194
25 C 0.088 3.912
26 H 0.034 0.966
27 N -0.841 5.841
28 C 0.123 3.877
29 C -0.129 4.129
30 H 0.284 0.716
31 H 0.108 0.892
32 H 0.142 0.858
33 H 0.155 0.845
34 H 0.123 0.877
35 H 0.108 0.892
36 H 0.062 0.938
37 H 0.121 0.879
38 H 0.355 0.645
39 H 0.351 0.649
40 H 0.100 0.900
41 H 0.074 0.926
42 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.242 -15.445 -10.767 19.300
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.458 5.458
2 C -0.187 4.187
3 Si 0.803 3.197
4 H -0.184 1.184
5 H -0.199 1.199
6 H -0.178 1.178
7 C -0.529 4.529
8 H 0.101 0.899
9 C 0.066 3.934
10 C -0.233 4.233
11 C -0.113 4.113
12 C -0.222 4.222
13 C -0.139 4.139
14 C 0.354 3.646
15 O -0.469 6.469
16 N -0.337 5.337
17 C -0.040 4.040
18 C -0.170 4.170
19 C -0.138 4.138
20 H 0.163 0.837
21 C 0.401 3.599
22 F -0.162 7.162
23 F -0.155 7.155
24 F -0.175 7.175
25 C -0.025 4.025
26 H 0.052 0.948
27 N -0.377 5.377
28 C 0.001 3.999
29 C -0.150 4.150
30 H 0.095 0.905
31 H 0.126 0.874
32 H 0.160 0.840
33 H 0.172 0.828
34 H 0.140 0.860
35 H 0.126 0.874
36 H 0.081 0.919
37 H 0.139 0.861
38 H 0.169 0.831
39 H 0.169 0.831
40 H 0.118 0.882
41 H 0.092 0.908
42 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -4.927 -15.409 -10.354 19.207
hybrid contribution 0.433 2.159 -0.868 2.367
sum -4.493 -13.250 -11.223 17.936
Atomic orbital electron populations
1.69893 1.09063 1.30354 1.36475 1.26825 0.95453 1.04843 0.91543
0.85239 0.78593 0.75593 0.80243 1.18379 1.19916 1.17788 1.19855
0.96814 0.91656 1.44553 0.89876 1.17922 0.91960 0.93910 0.89621
1.21459 1.03369 0.93259 1.05167 1.20980 0.95272 0.97542 0.97516
1.21303 0.99786 0.96095 1.05014 1.19691 0.96007 0.95692 1.02500
1.18897 0.85046 0.81770 0.78906 1.90684 1.54434 1.35152 1.66585
1.47928 1.19789 1.16393 1.49635 1.22850 0.96513 0.88216 0.96399
1.22088 0.94627 1.04506 0.95789 1.22601 1.00122 1.01700 0.89370
0.83654 1.20720 0.73784 0.74355 0.91080 1.93178 1.70723 1.55264
1.97053 1.93097 1.44308 1.92172 1.85947 1.93174 1.85329 1.55945
1.83090 1.21459 0.91152 0.94446 0.95441 0.94826 1.58833 1.13028
1.46929 1.18911 1.21494 0.85151 1.03278 0.90018 1.21405 0.98087
0.95682 0.99828 0.90540 0.87435 0.83990 0.82808 0.85983 0.87404
0.91871 0.86118 0.83086 0.83142 0.88214 0.90790 0.88759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -46.67 10.83 21.82 0.24 -46.43 16
2 C 0.03 1.42 5.23 85.25 0.45 1.86 16
3 Si 0.98 39.54 29.58 68.60 2.03 41.57 16
4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16
5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16
6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16
7 C -0.50 -26.83 9.06 23.47 0.21 -26.61 16
8 H 0.08 4.20 7.88 -2.91 -0.02 4.17 16
9 C 0.07 3.60 5.56 -21.32 -0.12 3.49 16
10 C -0.21 -9.50 9.78 22.77 0.22 -9.28 16
11 C -0.10 -3.48 10.01 22.18 0.22 -3.26 16
12 C -0.20 -7.33 7.43 22.70 0.17 -7.16 16
13 C -0.14 -6.13 5.49 -20.14 -0.11 -6.24 16
14 C 0.56 23.89 7.46 86.80 0.65 24.54 16
15 O -0.59 -30.10 16.08 -3.87 -0.06 -30.16 16
16 N -0.60 -17.98 2.97 -822.27 -2.44 -20.43 16
17 C 0.08 1.71 4.67 86.36 0.40 2.12 16
18 C -0.13 -2.33 5.11 30.67 0.16 -2.18 16
19 C -0.12 -1.99 1.93 -10.76 -0.02 -2.01 16
20 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16
21 C 0.45 8.24 2.56 71.98 0.18 8.43 16
22 F -0.18 -3.27 16.55 44.97 0.74 -2.52 16
23 F -0.17 -3.11 14.46 44.97 0.65 -2.46 16
24 F -0.19 -4.21 16.34 44.97 0.73 -3.47 16
25 C 0.09 1.81 2.72 44.99 0.12 1.93 16
26 H 0.03 0.85 7.72 -2.39 -0.02 0.83 16
27 N -0.84 -14.36 8.85 -168.35 -1.49 -15.85 16
28 C 0.12 3.08 5.96 86.36 0.52 3.59 16
29 C -0.13 -7.01 8.21 23.01 0.19 -6.82 16
30 H 0.28 14.84 8.30 -92.71 -0.77 14.07 16
31 H 0.11 4.45 8.06 -2.91 -0.02 4.42 16
32 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16
33 H 0.15 4.12 5.24 -2.91 -0.02 4.11 16
34 H 0.12 2.98 4.08 -2.38 -0.01 2.97 16
35 H 0.11 1.57 7.98 -2.38 -0.02 1.55 16
36 H 0.06 1.39 7.99 -2.39 -0.02 1.37 16
37 H 0.12 1.53 7.63 -2.39 -0.02 1.51 16
38 H 0.35 5.56 8.96 -89.69 -0.80 4.75 16
39 H 0.35 5.75 6.31 -89.70 -0.57 5.18 16
40 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16
41 H 0.07 2.23 7.00 -2.39 -0.02 2.21 16
42 H 0.09 5.77 5.98 -2.91 -0.02 5.75 16
Total: -1.00 -68.44 345.64 3.38 -65.06
By element:
Atomic # 1 Polarization: 32.57 SS G_CDS: -0.26 Total: 32.31 kcal
Atomic # 6 Polarization: -20.85 SS G_CDS: 3.24 Total: -17.61 kcal
Atomic # 7 Polarization: -79.02 SS G_CDS: -3.70 Total: -82.71 kcal
Atomic # 8 Polarization: -30.10 SS G_CDS: -0.06 Total: -30.16 kcal
Atomic # 9 Polarization: -10.59 SS G_CDS: 2.13 Total: -8.46 kcal
Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal
Total: -68.44 3.38 -65.06 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001580055754.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.321 kcal
(2) G-P(sol) polarization free energy of solvation -68.439 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.760 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.061 kcal
(6) G-S(sol) free energy of system = (1) + (5) -170.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds