Wall clock time and date at job start Sat Apr 11 2020 06:31:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 N 1.46503 * 109.47198 * 23.93551 * 3 2 1
5 5 C 1.36937 * 119.99996 * 264.29785 * 4 3 2
6 6 H 1.08005 * 119.99913 * 196.46682 * 5 4 3
7 7 C 1.38814 * 120.00155 * 16.46438 * 5 4 3
8 8 N 1.31621 * 119.99984 * 22.21918 * 7 5 4
9 9 Si 1.86805 * 120.00094 * 202.22569 * 7 5 4
10 10 H 1.48501 * 109.47079 * 359.97438 * 9 7 5
11 11 H 1.48501 * 109.46897 * 119.99531 * 9 7 5
12 12 H 1.48495 * 109.47022 * 239.99981 * 9 7 5
13 13 C 1.46499 * 120.00023 * 84.28897 * 4 3 2
14 14 C 1.50699 * 109.47622 * 270.00364 * 13 4 3
15 15 N 1.31280 * 118.89808 * 90.00040 * 14 13 4
16 16 C 1.34016 * 120.95871 * 179.97438 * 15 14 13
17 17 S 1.75524 * 131.24509 * 179.97438 * 16 15 14
18 18 C 1.75599 * 92.47191 * 180.02562 * 17 16 15
19 19 C 1.33389 * 111.37951 * 359.97438 * 18 17 16
20 20 C 1.39313 * 119.15164 * 359.97438 * 16 15 14
21 21 C 1.41924 * 117.66543 * 359.97438 * 20 16 15
22 22 N 1.38319 * 120.57634 * 179.97438 * 21 20 16
23 23 N 1.32077 * 118.89514 * 270.21779 * 14 13 4
24 24 C 1.52317 * 123.39462 * 180.08350 * 19 18 17
25 25 C 1.52955 * 108.85478 * 342.69104 * 24 19 18
26 26 C 1.53178 * 109.08706 * 50.80351 * 25 24 19
27 27 C 1.51885 * 124.29700 * 179.97438 * 18 17 16
28 28 H 4.40644 * 5.51316 * 180.02562 * 4 1 2
29 29 H 1.09000 * 109.47073 * 263.93509 * 3 2 1
30 30 H 1.08994 * 109.47223 * 143.93287 * 3 2 1
31 31 H 0.96994 * 119.99937 * 179.97438 * 8 7 5
32 32 H 1.09009 * 109.46927 * 149.99776 * 13 4 3
33 33 H 1.08998 * 109.46936 * 30.00808 * 13 4 3
34 34 H 0.96996 * 120.00223 * 9.56713 * 22 21 20
35 35 H 0.97001 * 120.00223 * 189.58146 * 22 21 20
36 36 H 1.09003 * 109.56952 * 222.88211 * 24 19 18
37 37 H 1.09000 * 109.57941 * 102.51046 * 24 19 18
38 38 H 1.09004 * 109.53264 * 290.92459 * 25 24 19
39 39 H 1.08993 * 109.59913 * 170.72125 * 25 24 19
40 40 H 1.09001 * 109.55657 * 169.79459 * 26 25 24
41 41 H 1.08995 * 109.65204 * 49.52242 * 26 25 24
42 42 H 1.08994 * 109.58004 * 283.14139 * 27 18 17
43 43 H 1.09005 * 109.57650 * 43.53535 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1350 -1.2616 -0.5604
5 6 3.4747 -2.2943 0.2722
6 1 4.0746 -3.1122 -0.0989
7 6 3.0483 -2.2900 1.5932
8 7 1.9984 -1.5776 1.9435
9 14 3.9645 -3.2950 2.8738
10 1 5.1001 -4.0018 2.2287
11 1 4.4807 -2.3929 3.9345
12 1 3.0409 -4.2897 3.4760
13 6 3.2602 -1.4190 -2.0115
14 6 1.9705 -1.9616 -2.5712
15 7 1.0414 -1.1179 -2.9564
16 6 -0.1208 -1.5552 -3.4606
17 16 -1.5271 -0.6854 -4.0492
18 6 -2.3790 -2.1714 -4.4357
19 6 -1.6446 -3.2444 -4.1382
20 6 -0.3379 -2.9266 -3.5745
21 6 0.6984 -3.7958 -3.1449
22 7 0.5466 -5.1680 -3.2304
23 7 1.8110 -3.2701 -2.6536
24 6 -2.1189 -4.6740 -4.3646
25 6 -3.6375 -4.6680 -4.5469
26 6 -4.0107 -3.6265 -5.6063
27 6 -3.7744 -2.2275 -5.0329
28 1 -1.0498 -0.0002 -0.0003
29 1 3.0093 0.1094 1.0219
30 1 3.0090 0.8315 -0.6050
31 1 1.7002 -1.5748 2.8665
32 1 4.0723 -2.1116 -2.2331
33 1 3.4743 -0.4512 -2.4648
34 1 -0.2081 -5.5434 -3.7103
35 1 1.1947 -5.7548 -2.8103
36 1 -1.8571 -5.2865 -3.5017
37 1 -1.6453 -5.0787 -5.2590
38 1 -4.1171 -4.4141 -3.6015
39 1 -3.9707 -5.6536 -4.8716
40 1 -5.0613 -3.7387 -5.8741
41 1 -3.3914 -3.7667 -6.4922
42 1 -4.5121 -2.0216 -4.2574
43 1 -3.8614 -1.4871 -5.8282
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281246944.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:25
Heat of formation + Delta-G solvation = 142.935895 kcal
Electronic energy + Delta-G solvation = -27532.707253 eV
Core-core repulsion = 23899.320035 eV
Total energy + Delta-G solvation = -3633.387219 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 342.121 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.51975 -38.38780 -36.23222 -35.11453 -33.93230 -31.53526 -31.43616 -31.20761
-30.67850 -28.87208 -26.56978 -25.86460 -24.43291 -23.32988 -22.60196 -21.90498
-20.87221 -18.69586 -17.83304 -17.60199 -17.30570 -16.51391 -16.34411 -15.64049
-15.19423 -14.95380 -14.71999 -14.36902 -14.06139 -13.66361 -13.61986 -13.52251
-13.41348 -12.99317 -12.76750 -12.71706 -12.25334 -11.71741 -11.51912 -11.40065
-11.31695 -11.07854 -11.03997 -10.93072 -10.72284 -10.61748 -10.36146 -10.25883
-10.15796 -9.94017 -9.02209 -8.82560 -8.77310 -8.50834 -8.34910 -8.18907
-7.36560 -7.11278 -5.83633 -3.20767 1.00201 1.54369 1.79007 2.20396
2.43488 3.35135 3.43317 3.45919 3.62779 4.19749 4.40698 4.48478
4.50963 4.60019 4.63077 4.64847 4.81764 4.86332 4.94004 5.17708
5.25749 5.29096 5.34236 5.42846 5.47067 5.55712 5.65814 5.70257
5.71713 5.77278 5.84676 5.97143 6.07008 6.19493 6.35061 6.51045
6.52645 6.76693 6.82584 7.23393 7.25823 7.47885 7.51565 7.76431
7.95651 8.20824 8.96902 9.06850 9.35442 9.68615 10.14302 11.18692
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.015444 B = 0.003777 C = 0.003485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1812.619198 B = 7411.890531 C = 8032.879304
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.295 4.295
2 C -0.089 4.089
3 C 0.267 3.733
4 N -0.561 5.561
5 C -0.254 4.254
6 H 0.083 0.917
7 C 0.003 3.997
8 N -0.882 5.882
9 Si 0.905 3.095
10 H -0.275 1.275
11 H -0.288 1.288
12 H -0.293 1.293
13 C 0.204 3.796
14 C 0.372 3.628
15 N -0.517 5.517
16 C 0.138 3.862
17 S 0.128 5.872
18 C -0.199 4.199
19 C -0.053 4.053
20 C -0.253 4.253
21 C 0.482 3.518
22 N -0.840 5.840
23 N -0.563 5.563
24 C -0.067 4.067
25 C -0.118 4.118
26 C -0.114 4.114
27 C -0.041 4.041
28 H 0.182 0.818
29 H 0.099 0.901
30 H 0.042 0.958
31 H 0.255 0.745
32 H 0.079 0.921
33 H 0.072 0.928
34 H 0.405 0.595
35 H 0.406 0.594
36 H 0.077 0.923
37 H 0.078 0.922
38 H 0.068 0.932
39 H 0.069 0.931
40 H 0.070 0.930
41 H 0.067 0.933
42 H 0.078 0.922
43 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.803 -4.367 -15.152 18.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.314 4.314
2 C -0.092 4.092
3 C 0.142 3.858
4 N -0.278 5.278
5 C -0.383 4.383
6 H 0.101 0.899
7 C -0.197 4.197
8 N -0.524 5.524
9 Si 0.735 3.265
10 H -0.200 1.200
11 H -0.214 1.214
12 H -0.220 1.220
13 C 0.074 3.926
14 C 0.098 3.902
15 N -0.238 5.238
16 C -0.115 4.115
17 S 0.389 5.611
18 C -0.315 4.315
19 C -0.066 4.066
20 C -0.271 4.271
21 C 0.227 3.773
22 N -0.388 5.388
23 N -0.288 5.288
24 C -0.107 4.107
25 C -0.156 4.156
26 C -0.153 4.153
27 C -0.081 4.081
28 H 0.200 0.800
29 H 0.117 0.883
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.097 0.903
33 H 0.090 0.910
34 H 0.238 0.762
35 H 0.236 0.764
36 H 0.095 0.905
37 H 0.096 0.904
38 H 0.087 0.913
39 H 0.088 0.912
40 H 0.089 0.911
41 H 0.085 0.915
42 H 0.096 0.904
43 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -9.311 -2.337 -14.695 17.553
hybrid contribution -0.742 -2.922 0.861 3.135
sum -10.053 -5.259 -13.834 17.891
Atomic orbital electron populations
1.23950 0.95119 1.05346 1.07007 1.23945 0.95001 0.95641 0.94627
1.17963 0.83080 0.85620 0.99101 1.44722 1.72191 1.12166 0.98732
1.19438 1.25531 1.02865 0.90491 0.89909 1.25016 0.96387 0.99497
0.98847 1.70188 1.21548 1.43369 1.17257 0.86176 0.79436 0.79286
0.81619 1.20031 1.21413 1.22027 1.20117 0.88751 0.98815 0.84922
1.24873 0.97255 0.83180 0.84894 1.68065 1.00101 1.38977 1.16673
1.23260 0.97843 0.92645 0.97709 1.83892 1.05681 1.06198 1.65319
1.24160 1.01200 0.95506 1.10635 1.19932 0.91645 0.95287 0.99756
1.19842 0.96922 0.94700 1.15597 1.18450 0.87323 0.85273 0.86212
1.42428 1.32200 1.02804 1.61330 1.67779 1.21862 1.16326 1.22860
1.20708 0.96323 0.92017 1.01634 1.21539 0.94947 0.99253 0.99849
1.21551 1.01449 0.93895 0.98435 1.20296 0.90302 0.97934 0.99528
0.80019 0.88346 0.93977 0.93482 0.90270 0.91001 0.76168 0.76368
0.90483 0.90355 0.91327 0.91240 0.91145 0.91454 0.90397 0.90571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.29 -7.39 19.25 29.55 0.57 -6.82 16
2 C -0.09 -2.30 10.87 -37.12 -0.40 -2.71 16
3 C 0.27 6.50 5.45 -6.83 -0.04 6.47 16
4 N -0.56 -13.84 2.49 -177.95 -0.44 -14.28 16
5 C -0.25 -6.77 9.67 -15.06 -0.15 -6.92 16
6 H 0.08 2.19 7.90 -52.48 -0.41 1.77 16
7 C 0.00 0.07 4.86 -17.43 -0.08 -0.02 16
8 N -0.88 -25.26 9.48 55.49 0.53 -24.73 16
9 Si 0.91 21.48 29.61 -169.99 -5.03 16.45 16
10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
13 C 0.20 4.38 6.12 -5.19 -0.03 4.35 16
14 C 0.37 8.33 6.91 -157.39 -1.09 7.24 16
15 N -0.52 -11.42 9.93 -9.61 -0.10 -11.52 16
16 C 0.14 2.76 7.67 -16.20 -0.12 2.64 16
17 S 0.13 2.06 23.18 -107.50 -2.49 -0.43 16
18 C -0.20 -2.73 6.29 -35.42 -0.22 -2.95 16
19 C -0.05 -0.77 5.93 -102.49 -0.61 -1.38 16
20 C -0.25 -4.65 6.05 -105.06 -0.64 -5.29 16
21 C 0.48 9.05 7.89 -154.53 -1.22 7.83 16
22 N -0.84 -11.60 8.90 31.58 0.28 -11.32 16
23 N -0.56 -12.19 10.32 -9.57 -0.10 -12.29 16
24 C -0.07 -0.69 4.52 -27.10 -0.12 -0.82 16
25 C -0.12 -0.99 5.91 -26.66 -0.16 -1.15 16
26 C -0.11 -0.90 5.93 -26.62 -0.16 -1.06 16
27 C -0.04 -0.40 6.24 -27.28 -0.17 -0.57 16
28 H 0.18 4.08 7.80 -54.10 -0.42 3.66 16
29 H 0.10 2.56 6.39 -51.93 -0.33 2.23 16
30 H 0.04 0.90 7.97 -51.93 -0.41 0.49 16
31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16
32 H 0.08 1.60 8.03 -51.92 -0.42 1.18 16
33 H 0.07 1.39 7.95 -51.93 -0.41 0.98 16
34 H 0.40 4.34 5.09 -40.82 -0.21 4.13 16
35 H 0.41 5.19 8.95 -40.82 -0.37 4.83 16
36 H 0.08 0.78 6.49 -51.93 -0.34 0.44 16
37 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16
38 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16
39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
41 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16
42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
LS Contribution 366.52 15.07 5.52 5.52
Total: -1.00 -33.32 366.52 -11.88 -45.20
By element:
Atomic # 1 Polarization: 13.97 SS G_CDS: -5.41 Total: 8.56 kcal
Atomic # 6 Polarization: 3.48 SS G_CDS: -4.64 Total: -1.16 kcal
Atomic # 7 Polarization: -74.32 SS G_CDS: 0.17 Total: -74.15 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal
Atomic # 16 Polarization: 2.06 SS G_CDS: -2.49 Total: -0.43 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -33.32 -11.88 -45.20 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281246944.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 188.140 kcal
(2) G-P(sol) polarization free energy of solvation -33.325 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.879 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) 142.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds