Wall clock time and date at job start Sat Apr 11 2020 06:31:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 N 1.46503 * 109.47198 * 23.93551 * 3 2 1
5 5 C 1.36937 * 119.99996 * 264.29785 * 4 3 2
6 6 H 1.08005 * 119.99913 * 196.46682 * 5 4 3
7 7 C 1.38814 * 120.00155 * 16.46438 * 5 4 3
8 8 N 1.31621 * 119.99984 * 22.21918 * 7 5 4
9 9 Si 1.86805 * 120.00094 * 202.22569 * 7 5 4
10 10 H 1.48501 * 109.47079 * 359.97438 * 9 7 5
11 11 H 1.48501 * 109.46897 * 119.99531 * 9 7 5
12 12 H 1.48495 * 109.47022 * 239.99981 * 9 7 5
13 13 C 1.46499 * 120.00023 * 84.28897 * 4 3 2
14 14 C 1.50699 * 109.47622 * 270.00364 * 13 4 3
15 15 N 1.31280 * 118.89808 * 90.00040 * 14 13 4
16 16 C 1.34016 * 120.95871 * 179.97438 * 15 14 13
17 17 S 1.75524 * 131.24509 * 179.97438 * 16 15 14
18 18 C 1.75599 * 92.47191 * 180.02562 * 17 16 15
19 19 C 1.33389 * 111.37951 * 359.97438 * 18 17 16
20 20 C 1.39313 * 119.15164 * 359.97438 * 16 15 14
21 21 C 1.41924 * 117.66543 * 359.97438 * 20 16 15
22 22 N 1.38319 * 120.57634 * 179.97438 * 21 20 16
23 23 N 1.32077 * 118.89514 * 270.21779 * 14 13 4
24 24 C 1.52317 * 123.39462 * 180.08350 * 19 18 17
25 25 C 1.52955 * 108.85478 * 342.69104 * 24 19 18
26 26 C 1.53178 * 109.08706 * 50.80351 * 25 24 19
27 27 C 1.51885 * 124.29700 * 179.97438 * 18 17 16
28 28 H 4.40644 * 5.51316 * 180.02562 * 4 1 2
29 29 H 1.09000 * 109.47073 * 263.93509 * 3 2 1
30 30 H 1.08994 * 109.47223 * 143.93287 * 3 2 1
31 31 H 0.96994 * 119.99937 * 179.97438 * 8 7 5
32 32 H 1.09009 * 109.46927 * 149.99776 * 13 4 3
33 33 H 1.08998 * 109.46936 * 30.00808 * 13 4 3
34 34 H 0.96996 * 120.00223 * 9.56713 * 22 21 20
35 35 H 0.97001 * 120.00223 * 189.58146 * 22 21 20
36 36 H 1.09003 * 109.56952 * 222.88211 * 24 19 18
37 37 H 1.09000 * 109.57941 * 102.51046 * 24 19 18
38 38 H 1.09004 * 109.53264 * 290.92459 * 25 24 19
39 39 H 1.08993 * 109.59913 * 170.72125 * 25 24 19
40 40 H 1.09001 * 109.55657 * 169.79459 * 26 25 24
41 41 H 1.08995 * 109.65204 * 49.52242 * 26 25 24
42 42 H 1.08994 * 109.58004 * 283.14139 * 27 18 17
43 43 H 1.09005 * 109.57650 * 43.53535 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1350 -1.2616 -0.5604
5 6 3.4747 -2.2943 0.2722
6 1 4.0746 -3.1122 -0.0989
7 6 3.0483 -2.2900 1.5932
8 7 1.9984 -1.5776 1.9435
9 14 3.9645 -3.2950 2.8738
10 1 5.1001 -4.0018 2.2287
11 1 4.4807 -2.3929 3.9345
12 1 3.0409 -4.2897 3.4760
13 6 3.2602 -1.4190 -2.0115
14 6 1.9705 -1.9616 -2.5712
15 7 1.0414 -1.1179 -2.9564
16 6 -0.1208 -1.5552 -3.4606
17 16 -1.5271 -0.6854 -4.0492
18 6 -2.3790 -2.1714 -4.4357
19 6 -1.6446 -3.2444 -4.1382
20 6 -0.3379 -2.9266 -3.5745
21 6 0.6984 -3.7958 -3.1449
22 7 0.5466 -5.1680 -3.2304
23 7 1.8110 -3.2701 -2.6536
24 6 -2.1189 -4.6740 -4.3646
25 6 -3.6375 -4.6680 -4.5469
26 6 -4.0107 -3.6265 -5.6063
27 6 -3.7744 -2.2275 -5.0329
28 1 -1.0498 -0.0002 -0.0003
29 1 3.0093 0.1094 1.0219
30 1 3.0090 0.8315 -0.6050
31 1 1.7002 -1.5748 2.8665
32 1 4.0723 -2.1116 -2.2331
33 1 3.4743 -0.4512 -2.4648
34 1 -0.2081 -5.5434 -3.7103
35 1 1.1947 -5.7548 -2.8103
36 1 -1.8571 -5.2865 -3.5017
37 1 -1.6453 -5.0787 -5.2590
38 1 -4.1171 -4.4141 -3.6015
39 1 -3.9707 -5.6536 -4.8716
40 1 -5.0613 -3.7387 -5.8741
41 1 -3.3914 -3.7667 -6.4922
42 1 -4.5121 -2.0216 -4.2574
43 1 -3.8614 -1.4871 -5.8282
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000281246944.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:24
Heat of formation + Delta-G solvation = 123.803434 kcal
Electronic energy + Delta-G solvation = -27533.536899 eV
Core-core repulsion = 23899.320035 eV
Total energy + Delta-G solvation = -3634.216865 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 342.121 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.93551 -39.41984 -37.96638 -36.52160 -35.17091 -33.49688 -33.10341 -32.64090
-31.60442 -30.30683 -28.19749 -27.71981 -25.63864 -24.77121 -23.78315 -23.14283
-22.33681 -19.74101 -19.45907 -19.05394 -18.83279 -18.28506 -17.70063 -16.93922
-16.80046 -16.34525 -16.01947 -15.65284 -15.43710 -15.28801 -15.10141 -14.78497
-14.58382 -14.23447 -13.91789 -13.70076 -13.57442 -13.42297 -13.22872 -12.99794
-12.79667 -12.51725 -12.41652 -12.22596 -12.07083 -11.98082 -11.76709 -11.71237
-11.35142 -11.24534 -10.79423 -10.75140 -10.33245 -10.30434 -10.04487 -9.50296
-9.08480 -8.64886 -7.86012 -5.27085 -0.37095 0.22759 0.32836 0.98340
1.17492 1.46230 1.49289 1.59610 2.31217 2.35543 2.54412 2.64718
2.88739 3.21051 3.39443 3.40423 3.64768 3.82902 3.86607 3.89946
4.01347 4.08199 4.14237 4.27434 4.33884 4.53264 4.58967 4.70790
4.73053 4.82778 4.87269 4.93715 5.01176 5.04585 5.16862 5.28451
5.29866 5.35325 5.45948 5.50116 5.59305 5.68855 5.91683 6.14822
6.23026 6.71067 7.04742 7.38790 7.45937 7.74221 8.17596 9.15417
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.015444 B = 0.003777 C = 0.003485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1812.619198 B = 7411.890531 C = 8032.879304
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.307 4.307
2 C -0.104 4.104
3 C 0.269 3.731
4 N -0.574 5.574
5 C -0.256 4.256
6 H 0.080 0.920
7 C -0.046 4.046
8 N -0.914 5.914
9 Si 0.966 3.034
10 H -0.264 1.264
11 H -0.288 1.288
12 H -0.304 1.304
13 C 0.205 3.795
14 C 0.354 3.646
15 N -0.537 5.537
16 C 0.093 3.907
17 S 0.134 5.866
18 C -0.184 4.184
19 C -0.070 4.070
20 C -0.253 4.253
21 C 0.468 3.532
22 N -0.817 5.817
23 N -0.589 5.589
24 C -0.067 4.067
25 C -0.116 4.116
26 C -0.110 4.110
27 C -0.044 4.044
28 H 0.200 0.800
29 H 0.077 0.923
30 H 0.067 0.933
31 H 0.245 0.755
32 H 0.086 0.914
33 H 0.088 0.912
34 H 0.421 0.579
35 H 0.413 0.587
36 H 0.078 0.922
37 H 0.098 0.902
38 H 0.059 0.941
39 H 0.097 0.903
40 H 0.097 0.903
41 H 0.071 0.929
42 H 0.087 0.913
43 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.939 -6.102 -17.286 21.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.327 4.327
2 C -0.107 4.107
3 C 0.145 3.855
4 N -0.292 5.292
5 C -0.386 4.386
6 H 0.098 0.902
7 C -0.242 4.242
8 N -0.559 5.559
9 Si 0.795 3.205
10 H -0.188 1.188
11 H -0.215 1.215
12 H -0.231 1.231
13 C 0.076 3.924
14 C 0.079 3.921
15 N -0.259 5.259
16 C -0.157 4.157
17 S 0.396 5.604
18 C -0.300 4.300
19 C -0.082 4.082
20 C -0.272 4.272
21 C 0.213 3.787
22 N -0.366 5.366
23 N -0.317 5.317
24 C -0.106 4.106
25 C -0.154 4.154
26 C -0.149 4.149
27 C -0.083 4.083
28 H 0.217 0.783
29 H 0.095 0.905
30 H 0.085 0.915
31 H 0.055 0.945
32 H 0.104 0.896
33 H 0.106 0.894
34 H 0.258 0.742
35 H 0.244 0.756
36 H 0.096 0.904
37 H 0.116 0.884
38 H 0.078 0.922
39 H 0.115 0.885
40 H 0.115 0.885
41 H 0.090 0.910
42 H 0.106 0.894
43 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -11.474 -4.111 -16.892 20.830
hybrid contribution -0.238 -2.407 1.263 2.729
sum -11.712 -6.518 -15.629 20.590
Atomic orbital electron populations
1.24483 0.95921 1.05340 1.06917 1.24418 0.95784 0.95725 0.94737
1.17922 0.82597 0.86540 0.98487 1.44625 1.72894 1.11809 0.99863
1.19589 1.25170 1.02741 0.91116 0.90207 1.25638 0.97143 1.01065
1.00360 1.70346 1.23175 1.45703 1.16671 0.85233 0.78310 0.77674
0.79307 1.18831 1.21488 1.23147 1.20122 0.88941 0.99895 0.83410
1.24674 0.97239 0.83817 0.86376 1.68006 1.01025 1.39397 1.17432
1.23839 0.98502 0.94498 0.98865 1.83796 1.04340 1.07830 1.64456
1.24792 1.02497 0.93784 1.08929 1.20307 0.90041 0.97917 0.99909
1.20302 0.98269 0.94133 1.14447 1.18736 0.87043 0.86989 0.85958
1.42362 1.32705 1.01005 1.60518 1.67724 1.23522 1.16210 1.24211
1.20853 0.98142 0.89068 1.02528 1.21571 0.93003 1.01012 0.99789
1.21585 1.03224 0.91979 0.98117 1.20555 0.87538 1.00073 1.00155
0.78271 0.90474 0.91474 0.94503 0.89600 0.89417 0.74248 0.75613
0.90407 0.88371 0.92169 0.88486 0.88500 0.91038 0.89427 0.89062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.31 -15.72 19.25 74.32 1.43 -14.29 16
2 C -0.10 -5.48 10.87 31.13 0.34 -5.15 16
3 C 0.27 13.48 5.45 84.57 0.46 13.94 16
4 N -0.57 -28.94 2.49 -716.90 -1.79 -30.73 16
5 C -0.26 -13.95 9.67 84.03 0.81 -13.14 16
6 H 0.08 4.29 7.90 -2.91 -0.02 4.26 16
7 C -0.05 -2.55 4.86 84.86 0.41 -2.13 16
8 N -0.91 -54.01 9.48 21.65 0.21 -53.80 16
9 Si 0.97 45.23 29.61 68.60 2.03 47.26 16
10 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16
11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16
12 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16
13 C 0.21 9.00 6.12 85.63 0.52 9.52 16
14 C 0.35 16.17 6.91 138.82 0.96 17.13 16
15 N -0.54 -24.18 9.93 -184.33 -1.83 -26.01 16
16 C 0.09 3.74 7.67 84.62 0.65 4.39 16
17 S 0.13 4.21 23.18 -56.49 -1.31 2.90 16
18 C -0.18 -4.60 6.29 24.97 0.16 -4.45 16
19 C -0.07 -1.87 5.93 -18.48 -0.11 -1.98 16
20 C -0.25 -9.15 6.05 -20.15 -0.12 -9.27 16
21 C 0.47 17.39 7.89 133.96 1.06 18.44 16
22 N -0.82 -21.36 8.90 -54.00 -0.48 -21.84 16
23 N -0.59 -25.88 10.32 -184.21 -1.90 -27.78 16
24 C -0.07 -1.14 4.52 30.35 0.14 -1.00 16
25 C -0.12 -1.43 5.91 30.64 0.18 -1.25 16
26 C -0.11 -1.21 5.93 30.66 0.18 -1.03 16
27 C -0.04 -0.69 6.24 30.24 0.19 -0.50 16
28 H 0.20 9.05 7.80 -4.43 -0.03 9.01 16
29 H 0.08 4.17 6.39 -2.39 -0.02 4.15 16
30 H 0.07 2.93 7.97 -2.39 -0.02 2.91 16
31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16
32 H 0.09 3.55 8.03 -2.38 -0.02 3.53 16
33 H 0.09 3.45 7.95 -2.39 -0.02 3.43 16
34 H 0.42 8.00 5.09 -92.71 -0.47 7.53 16
35 H 0.41 10.00 8.95 -92.71 -0.83 9.17 16
36 H 0.08 1.32 6.49 -2.39 -0.02 1.31 16
37 H 0.10 1.31 8.06 -2.39 -0.02 1.29 16
38 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16
39 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16
40 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.07 0.77 8.11 -2.39 -0.02 0.76 16
42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
43 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16
Total: -1.00 -74.73 366.52 1.95 -72.78
By element:
Atomic # 1 Polarization: 28.22 SS G_CDS: -0.23 Total: 27.99 kcal
Atomic # 6 Polarization: 1.98 SS G_CDS: 7.26 Total: 9.24 kcal
Atomic # 7 Polarization: -154.37 SS G_CDS: -5.79 Total: -160.16 kcal
Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal
Atomic # 16 Polarization: 4.21 SS G_CDS: -1.31 Total: 2.90 kcal
Total: -74.73 1.95 -72.78 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281246944.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 196.579 kcal
(2) G-P(sol) polarization free energy of solvation -74.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.850 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal
(6) G-S(sol) free energy of system = (1) + (5) 123.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds