Wall clock time and date at job start Sat Apr 11 2020 06:30:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86807 * 119.99920 * 2 1
4 4 H 1.48497 * 109.46893 * 90.00158 * 3 2 1
5 5 H 1.48501 * 109.46763 * 210.00120 * 3 2 1
6 6 H 1.48498 * 109.46885 * 329.99952 * 3 2 1
7 7 C 1.38812 * 120.00126 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99956 * 359.97438 * 7 2 1
9 9 N 1.36936 * 120.00065 * 179.97438 * 7 2 1
10 10 C 1.46502 * 119.99648 * 179.97438 * 9 7 2
11 11 C 1.53004 * 109.46631 * 187.38932 * 10 9 7
12 12 H 1.08997 * 109.87694 * 313.47615 * 11 10 9
13 13 C 1.54323 * 109.88270 * 192.29859 * 11 10 9
14 14 C 1.55153 * 102.94393 * 218.39255 * 13 11 10
15 15 C 1.54910 * 101.58306 * 35.50427 * 14 13 11
16 16 N 1.47023 * 109.88166 * 74.49426 * 11 10 9
17 17 C 1.34783 * 125.64620 * 298.39160 * 16 11 10
18 18 O 1.21561 * 120.00049 * 4.73773 * 17 16 11
19 19 C 1.47728 * 119.99436 * 184.73738 * 17 16 11
20 20 C 1.39664 * 120.12074 * 336.26608 * 19 17 16
21 21 C 1.37819 * 119.88029 * 179.97438 * 20 19 17
22 22 C 1.38674 * 120.11645 * 359.97438 * 21 20 19
23 23 F 1.35105 * 119.88079 * 180.02562 * 22 21 20
24 24 C 1.38634 * 120.24085 * 0.02562 * 22 21 20
25 25 C 1.50702 * 119.93913 * 180.02562 * 24 22 21
26 26 F 1.39896 * 109.47263 * 120.00335 * 25 24 22
27 27 F 1.39906 * 109.47070 * 239.99889 * 25 24 22
28 28 C 1.37861 * 120.11657 * 359.74312 * 24 22 21
29 29 H 0.96998 * 119.99983 * 359.97438 * 1 2 3
30 30 H 0.96995 * 119.99793 * 359.97438 * 9 7 2
31 31 H 1.08995 * 109.47381 * 307.38710 * 10 9 7
32 32 H 1.09000 * 109.47348 * 67.39757 * 10 9 7
33 33 H 1.09005 * 110.71687 * 336.75638 * 13 11 10
34 34 H 1.08997 * 110.71609 * 100.02468 * 13 11 10
35 35 H 1.08998 * 111.00683 * 277.42637 * 14 13 11
36 36 H 1.08996 * 111.00281 * 153.57805 * 14 13 11
37 37 H 1.09001 * 110.36409 * 204.15529 * 15 14 13
38 38 H 1.08996 * 110.36913 * 81.82412 * 15 14 13
39 39 H 1.07995 * 120.06381 * 0.02562 * 20 19 17
40 40 H 1.08001 * 119.93977 * 179.97438 * 21 20 19
41 41 H 1.09000 * 109.47391 * 359.97438 * 25 24 22
42 42 H 1.08005 * 120.05612 * 180.25429 * 28 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 1.4001
5 1 3.5477 1.4402 -0.7001
6 1 1.4476 2.6527 -0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 1.4703 -2.1375 -0.0005
9 7 3.3796 -1.2021 -0.0011
10 6 4.1121 -2.4709 -0.0011
11 6 5.6061 -2.1972 0.1838
12 1 5.9199 -1.3908 -0.4790
13 6 6.4154 -3.4756 -0.1199
14 6 7.5386 -3.4382 0.9498
15 6 6.7924 -2.8296 2.1632
16 7 5.8779 -1.8303 1.5813
17 6 5.3740 -0.7582 2.2242
18 8 4.5585 -0.0460 1.6716
19 6 5.8127 -0.4488 3.6005
20 6 6.3280 -1.4591 4.4157
21 6 6.7364 -1.1648 5.6986
22 6 6.6368 0.1318 6.1804
23 9 7.0390 0.4150 7.4387
24 6 6.1261 1.1384 5.3755
25 6 6.0215 2.5452 5.9057
26 9 6.7862 3.4025 5.1074
27 9 4.6839 2.9546 5.8812
28 6 5.7192 0.8559 4.0889
29 1 -0.4850 0.8400 0.0004
30 1 3.8646 -0.3621 -0.0014
31 1 3.7537 -3.0974 0.8157
32 1 3.9513 -2.9833 -0.9496
33 1 5.7948 -4.3633 0.0034
34 1 6.8375 -3.4353 -1.1240
35 1 8.3590 -2.7944 0.6326
36 1 7.8970 -4.4426 1.1752
37 1 7.4983 -2.3489 2.8405
38 1 6.2277 -3.6008 2.6871
39 1 6.4071 -2.4689 4.0411
40 1 7.1346 -1.9454 6.3300
41 1 6.3917 2.5757 6.9305
42 1 5.3252 1.6417 3.4613
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754609985.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:42
Heat of formation + Delta-G solvation = -126.337751 kcal
Electronic energy + Delta-G solvation = -30715.600805 eV
Core-core repulsion = 26053.634643 eV
Total energy + Delta-G solvation = -4661.966163 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-50.43065 -50.04191 -48.18722 -41.75291 -39.84643 -38.39942 -36.47042 -34.11347
-33.38928 -32.63710 -31.68324 -30.72612 -27.57852 -26.81041 -25.68346 -24.21022
-23.50663 -22.77048 -22.09755 -20.59201 -19.82087 -19.04968 -18.73648 -18.59846
-18.44994 -17.77345 -17.43337 -16.84759 -16.67937 -16.60760 -16.43857 -15.57544
-15.48187 -15.32056 -15.10702 -14.97646 -14.70750 -14.66813 -14.56340 -14.23428
-14.13039 -13.97181 -13.81326 -13.62770 -13.47337 -13.26905 -12.97786 -12.88061
-12.78276 -12.16364 -12.13871 -11.96487 -11.77017 -11.69537 -11.53039 -11.00940
-10.84601 -10.48614 -10.08981 -9.66254 -9.13387 -8.04758 -5.28833 -0.58107
-0.20953 1.26682 1.37684 1.45597 1.57476 1.87043 2.38439 2.44057
2.49194 2.77138 2.98765 3.21615 3.29058 3.41397 3.53015 3.61482
3.69809 3.80298 3.82460 3.98548 4.07138 4.19013 4.25065 4.32418
4.41983 4.55548 4.57226 4.68480 4.73549 4.79522 4.81666 4.87930
4.96629 5.03831 5.12802 5.20364 5.40867 5.42892 5.51740 5.73179
6.21957 6.49475 7.06650 7.24992 8.00865 8.19877 9.17672
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.009269 B = 0.004846 C = 0.003479
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3020.128279 B = 5776.134036 C = 8045.390290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.986 5.986
2 C -0.059 4.059
3 Si 0.964 3.036
4 H -0.295 1.295
5 H -0.273 1.273
6 H -0.301 1.301
7 C -0.214 4.214
8 H 0.056 0.944
9 N -0.752 5.752
10 C 0.143 3.857
11 C 0.127 3.873
12 H 0.056 0.944
13 C -0.115 4.115
14 C -0.118 4.118
15 C 0.072 3.928
16 N -0.607 5.607
17 C 0.551 3.449
18 O -0.550 6.550
19 C -0.146 4.146
20 C -0.043 4.043
21 C -0.139 4.139
22 C 0.159 3.841
23 F -0.120 7.120
24 C -0.223 4.223
25 C 0.310 3.690
26 F -0.206 7.206
27 F -0.211 7.211
28 C -0.022 4.022
29 H 0.254 0.746
30 H 0.376 0.624
31 H 0.021 0.979
32 H 0.034 0.966
33 H 0.089 0.911
34 H 0.098 0.902
35 H 0.082 0.918
36 H 0.121 0.879
37 H 0.108 0.892
38 H 0.095 0.905
39 H 0.191 0.809
40 H 0.196 0.804
41 H 0.163 0.837
42 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 26.931 -8.488 14.700 31.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.639 5.639
2 C -0.250 4.250
3 Si 0.796 3.204
4 H -0.222 1.222
5 H -0.199 1.199
6 H -0.229 1.229
7 C -0.346 4.346
8 H 0.074 0.926
9 N -0.404 5.404
10 C 0.016 3.984
11 C 0.023 3.977
12 H 0.075 0.925
13 C -0.153 4.153
14 C -0.156 4.156
15 C -0.048 4.048
16 N -0.341 5.341
17 C 0.340 3.660
18 O -0.428 6.428
19 C -0.149 4.149
20 C -0.061 4.061
21 C -0.157 4.157
22 C 0.139 3.861
23 F -0.098 7.098
24 C -0.225 4.225
25 C 0.257 3.743
26 F -0.187 7.187
27 F -0.193 7.193
28 C -0.041 4.041
29 H 0.063 0.937
30 H 0.217 0.783
31 H 0.039 0.961
32 H 0.052 0.948
33 H 0.108 0.892
34 H 0.116 0.884
35 H 0.100 0.900
36 H 0.140 0.860
37 H 0.126 0.874
38 H 0.113 0.887
39 H 0.208 0.792
40 H 0.213 0.787
41 H 0.180 0.820
42 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges 26.319 -8.078 14.463 31.099
hybrid contribution -0.737 1.936 -0.249 2.086
sum 25.583 -6.142 14.215 29.904
Atomic orbital electron populations
1.69861 1.06600 1.26058 1.61365 1.25201 0.95802 1.00321 1.03708
0.85250 0.77373 0.80704 0.77072 1.22230 1.19927 1.22888 1.19088
0.83444 0.92942 1.39107 0.92649 1.43305 1.02333 1.05013 1.89720
1.21225 0.91032 0.88025 0.98124 1.21995 0.94281 0.98980 0.82450
0.92541 1.22650 0.96795 0.94389 1.01490 1.22831 0.96529 1.03574
0.92654 1.23242 0.92340 0.90869 0.98343 1.48472 1.47665 1.24906
1.13024 1.18336 0.80685 0.80795 0.86185 1.90700 1.33131 1.50956
1.68013 1.19888 1.05289 0.94977 0.94732 1.22378 0.90748 1.00747
0.92208 1.21556 1.02468 0.94940 0.96714 1.17592 0.95683 0.93652
0.79187 1.91553 1.87568 1.94184 1.36519 1.20329 1.09731 0.96246
0.96176 1.20657 0.73847 0.83029 0.96812 1.93005 1.75460 1.72569
1.77648 1.93028 1.37105 1.91510 1.97614 1.20803 0.92821 0.96655
0.93866 0.93729 0.78314 0.96111 0.94814 0.89193 0.88355 0.89951
0.86048 0.87431 0.88666 0.79201 0.78650 0.82005 0.86847
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -69.41 13.97 21.65 0.30 -69.11 16
2 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16
3 Si 0.96 56.60 26.46 68.60 1.81 58.41 16
4 H -0.29 -17.78 7.11 99.48 0.71 -17.07 16
5 H -0.27 -15.37 6.52 99.48 0.65 -14.72 16
6 H -0.30 -17.24 7.11 99.48 0.71 -16.53 16
7 C -0.21 -13.73 10.47 84.03 0.88 -12.85 16
8 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16
9 N -0.75 -40.52 3.90 -343.44 -1.34 -41.86 16
10 C 0.14 5.78 5.62 86.38 0.49 6.27 16
11 C 0.13 3.68 3.09 45.34 0.14 3.82 16
12 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16
13 C -0.11 -1.84 6.45 31.78 0.21 -1.64 16
14 C -0.12 -1.08 7.08 31.99 0.23 -0.85 16
15 C 0.07 0.93 5.01 86.86 0.44 1.37 16
16 N -0.61 -16.39 3.07 -791.55 -2.43 -18.81 16
17 C 0.55 19.50 7.50 86.75 0.65 20.15 16
18 O -0.55 -26.62 11.30 -3.91 -0.04 -26.66 16
19 C -0.15 -3.99 5.77 -20.09 -0.12 -4.10 16
20 C -0.04 -0.68 7.98 22.52 0.18 -0.50 16
21 C -0.14 -1.65 10.01 22.27 0.22 -1.42 16
22 C 0.16 2.66 7.25 22.47 0.16 2.83 16
23 F -0.12 -1.73 16.18 44.97 0.73 -1.00 16
24 C -0.22 -5.22 5.37 -19.86 -0.11 -5.33 16
25 C 0.31 6.98 5.43 71.24 0.39 7.37 16
26 F -0.21 -5.32 17.25 44.97 0.78 -4.54 16
27 F -0.21 -6.17 17.26 44.97 0.78 -5.40 16
28 C -0.02 -0.66 9.13 22.52 0.21 -0.46 16
29 H 0.25 17.11 8.31 -92.71 -0.77 16.34 16
30 H 0.38 20.78 3.11 -92.71 -0.29 20.49 16
31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16
33 H 0.09 1.34 7.85 -2.38 -0.02 1.33 16
34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
36 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16
37 H 0.11 0.89 5.85 -2.39 -0.01 0.88 16
38 H 0.10 0.90 7.43 -2.39 -0.02 0.88 16
39 H 0.19 1.76 4.19 -2.91 -0.01 1.74 16
40 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16
41 H 0.16 2.28 7.12 -2.39 -0.02 2.26 16
42 H 0.11 4.15 7.83 -2.91 -0.02 4.13 16
Total: -1.00 -93.18 348.38 5.75 -87.43
By element:
Atomic # 1 Polarization: 9.64 SS G_CDS: 0.74 Total: 10.38 kcal
Atomic # 6 Polarization: 6.73 SS G_CDS: 4.43 Total: 11.15 kcal
Atomic # 7 Polarization: -126.31 SS G_CDS: -3.46 Total: -129.78 kcal
Atomic # 8 Polarization: -26.62 SS G_CDS: -0.04 Total: -26.66 kcal
Atomic # 9 Polarization: -13.22 SS G_CDS: 2.28 Total: -10.94 kcal
Atomic # 14 Polarization: 56.60 SS G_CDS: 1.81 Total: 58.41 kcal
Total: -93.18 5.75 -87.43 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754609985.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.906 kcal
(2) G-P(sol) polarization free energy of solvation -93.183 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds